CsaV3_5G020070 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G020070
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr5 : 14769944 .. 14770569 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATTACTCATGGCCAGAGGAAGGAGTGAGAAAAGGAGTTGGAAAGGCAAAGAGAAGAGTTCCAAATCAAAATCAAGGGGAAAAGGTAGAAAGTGTTTCTTATGTCATAAAGAATGACACTTTAAGAAAAAATTGCCCTTTGAATAAGAGTAAGAAAGCATCGAGTAGCCAGTATGCAACTGAGACTAGTGCAGCGAATGTTACTGATGGGTGTGATTCAACAGAGGTCTTGATGGGTCTCATAGGGATACTCAGGATGCTTGGATCATGGATTCAAGGTGCACGTATTTCATGACTCCTAATCGAGATTTTCTAATTAATTTTTAGAAAAATGATGGGGGAAAGTTTTACTAGGTGATAATGGTACATGTGATGTAAAGGGAATTGGTTCAGTCCAAATTGCAACACATGACGGGATTATCAGAGTTCTCACTAATGTGAGTTATGTTCCAGAACTCAAATGTAATCTAATATCTCTTGGTGATTTAGAAAGATCAATTTATACTTATAAATCTGAGAATGGAGTTTTGAAAGTTAGCAAGGATTCCTTGGTTAAATCGAGGGGAACCTTGAGGAATGGTTTATATGTATTGGAAGGTACTGCAGTTTCAGGCAGTGCTG

mRNA sequence

ATGGAGAATTACTCATGGCCAGAGGAAGGAGTGAGAAAAGGAGTTGGAAAGGCAAAGAGAAGAGTTCCAAATCAAAATCAAGGGGAAAAGGTAGAAAGTGTTTCTTATGTCATAAAGAATGACACTTTAAGAAAAAATTGCCCTTTGAATAAGAGTAAGAAAGCATCGAGTAGCCAGTATGCAACTGAGACTAGTGCAGCGAATGTTACTGATGGGTGTGATTCAACAGAGGTCTTGATGGGTCTCATAGGGATACTCAGGATGCTTGGATCATGGATTCAAGGTGATAATGGTACATGTGATGTAAAGGGAATTGGTTCAGTCCAAATTGCAACACATGACGGGATTATCAGAGTTCTCACTAATGTGAGTTATGTTCCAGAACTCAAATGTAATCTAATATCTCTTGGTGATTTAGAAAGATCAATTTATACTTATAAATCTGAGAATGGAGTTTTGAAAGTTAGCAAGGATTCCTTGGTTAAATCGAGGGGAACCTTGAGGAATGGTTTATATGTATTGGAAGGTACTGCAGTTTCAGGCAGTGCTG

Coding sequence (CDS)

ATGGAGAATTACTCATGGCCAGAGGAAGGAGTGAGAAAAGGAGTTGGAAAGGCAAAGAGAAGAGTTCCAAATCAAAATCAAGGGGAAAAGGTAGAAAGTGTTTCTTATGTCATAAAGAATGACACTTTAAGAAAAAATTGCCCTTTGAATAAGAGTAAGAAAGCATCGAGTAGCCAGTATGCAACTGAGACTAGTGCAGCGAATGTTACTGATGGGTGTGATTCAACAGAGGTCTTGATGGGTCTCATAGGGATACTCAGGATGCTTGGATCATGGATTCAAGGTGATAATGGTACATGTGATGTAAAGGGAATTGGTTCAGTCCAAATTGCAACACATGACGGGATTATCAGAGTTCTCACTAATGTGAGTTATGTTCCAGAACTCAAATGTAATCTAATATCTCTTGGTGATTTAGAAAGATCAATTTATACTTATAAATCTGAGAATGGAGTTTTGAAAGTTAGCAAGGATTCCTTGGTTAAATCGAGGGGAACCTTGAGGAATGGTTTATATGTATTGGAAGGTACTGCAGTTTCAGGCAGTGCTG

Protein sequence

MENYSWPEEGVRKGVGKAKRRVPNQNQGEKVESVSYVIKNDTLRKNCPLNKSKKASSSQYATETSAANVTDGCDSTEVLMGLIGILRMLGSWIQGDNGTCDVKGIGSVQIATHDGIIRVLTNVSYVPELKCNLISLGDLERSIYTYKSENGVLKVSKDSLVKSRGTLRNGLYVLEGTAVSGSAX
Homology
[Close]
BLAST of CsaV3_5G020070 vs. NCBI nr
Match: PKU72844.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatum])

HSP 1 Score: 103.6 bits (257), Expect = 7.3e-19
Identity = 61/143 (42.66%), Postives = 85/143 (59.44%), Query Frame = 0 

Query: 39  KNDTLRKNCPLNKSKKASSSQYATETSAANVTDGCDSTEVLMGLIGILRMLGSWIQGDNG 98
           K   +R+ CP    K  S SQ      AA V +  DS +VL         +   + G+N 
Sbjct: 217 KTGHIRRFCPEKNPKDKSQSQ----GDAAIVGENYDSADVL--------NVSDLLLGNNK 276

Query: 99  TCDVKGIGSVQIATHDGIIRVLTNVSYVPELKCNLISLGDLERSIYTYKSENGVLKVSKD 158
            CDV GIGS+ +  HDG +R+L +V +VP+LK NLISLG L+ S Y ++SE G+L++SK 
Sbjct: 277 ACDVVGIGSIAVKMHDGHVRILKDVRHVPDLKRNLISLGTLDDSGYIFRSERGLLRISKG 336

Query: 159 SLVKSRGTLRNGLYVLEGTAVSG 182
           +LV  +G  RNGLYVL+G  + G
Sbjct: 337 ALVIMKGIKRNGLYVLQGATLVG 347

[Close]
BLAST of CsaV3_5G020070 vs. NCBI nr
Match: XP_016457574.1 (PREDICTED: uncharacterized mitochondrial protein AtMg00300-like [Nicotiana tabacum])

HSP 1 Score: 102.1 bits (253), Expect = 2.1e-18
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = 0 

Query: 90  GSWIQGDNGTCDVKGIGSVQIATHDGIIRVLTNVSYVPELKCNLISLGDLERSIYTYKSE 149
           G+ + G+N TC + GIGSV++  HDG++R +T V +VP+LK NLISL  L+   Y Y SE
Sbjct: 16  GTVVMGNNATCAIVGIGSVRVRCHDGVVRTITQVRHVPDLKKNLISLSTLDEQGYRYMSE 75

Query: 150 NGVLKVSKDSLVKSRGTLRNGLYVLEGTAVSGSA 184
            G +KV+K SLV  +G L NGLY L G+ + GSA
Sbjct: 76  AGTIKVTKGSLVMLKGKLENGLYTLAGSTIVGSA 109

[Close]
BLAST of CsaV3_5G020070 vs. NCBI nr
Match: KYP65226.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 97.8 bits (242), Expect = 4.0e-17
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = 0 

Query: 90  GSWIQGDNGTCDVKGIGSVQIATHDGIIRVLTNVSYVPELKCNLISLGDLERSIYTYKSE 149
           G  + GDN  C +KGIGS++   HDGI RVL +V YVP+LK NLISLG+ ++  Y ++ +
Sbjct: 294 GLVLLGDNKPCKIKGIGSIRFRFHDGIERVLADVRYVPDLKRNLISLGEFDKKGYVFQGQ 353

Query: 150 NGVLKVSKDSLVKSRGTLRNGLYVLEGTAVSGSA 184
            G+L V K+ +V  RG ++NGLY ++G  ++GSA
Sbjct: 354 EGILNVVKNYVVVMRGIMKNGLYSVDGEVITGSA 387

[Close]
BLAST of CsaV3_5G020070 vs. NCBI nr
Match: PON85524.1 (hypothetical protein TorRG33x02_186730 [Trema orientalis])

HSP 1 Score: 97.8 bits (242), Expect = 4.0e-17
Identity = 50/94 (53.19%), Postives = 64/94 (68.09%), Query Frame = 0 

Query: 90  GSWIQGDNGTCDVKGIGSVQIATHDGIIRVLTNVSYVPELKCNLISLGDLERSIYTYKSE 149
           G  + G+N  C V GIG+V+I  HDG+ RVL NV Y+PELK NLISLG L+   Y+YK+E
Sbjct: 17  GQVLLGNNKGCKVVGIGTVRIKMHDGVERVLENVRYLPELKRNLISLGTLDSKGYSYKAE 76

Query: 150 NGVLKVSKDSLVKSRGTLRNGLYVLEGTAVSGSA 184
            G L+VS+  L   +G   NGLYVL+G  V+G A
Sbjct: 77  GGHLRVSRGCLAVIKGVKENGLYVLQGNTVNGVA 110

[Close]
BLAST of CsaV3_5G020070 vs. NCBI nr
Match: PON58179.1 (hypothetical protein PanWU01x14_167780 [Parasponia andersonii])

HSP 1 Score: 97.1 bits (240), Expect = 6.8e-17
Identity = 47/94 (50.00%), Postives = 65/94 (69.15%), Query Frame = 0 

Query: 90  GSWIQGDNGTCDVKGIGSVQIATHDGIIRVLTNVSYVPELKCNLISLGDLERSIYTYKSE 149
           G  + G+N  C V GIGS+ +   DG+ R+L NV +VPELK NLISL  L+ S Y +K+E
Sbjct: 25  GKVLMGNNVACKVMGIGSISMRMFDGVTRILKNVGHVPELKRNLISLDTLDESGYGFKAE 84

Query: 150 NGVLKVSKDSLVKSRGTLRNGLYVLEGTAVSGSA 184
           NG LKVSK ++V  +G  +NGLY+L+G+ V  +A
Sbjct: 85  NGQLKVSKGAMVVMKGFKKNGLYILQGSTVKAAA 118

[Close]
BLAST of CsaV3_5G020070 vs. Swiss-Prot
Match: sp|P10978|POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.0e-05
Identity = 30/83 (36.14%), Postives = 45/83 (54.22%), Query Frame = 0 

Query: 90  GSWIQGDNGTCDVKGIGSVQIATHDGIIRVLTNVSYVPELKCNLISLGDLERSIYTYKSE 149
           G+   G+     + GIG + I T+ G   VL +V +VP+L+ NLIS   L+R  Y     
Sbjct: 320 GTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFA 379

Query: 150 NGVLKVSKDSLVKSRGTLRNGLY 173
           N   +++K SLV ++G  R  LY
Sbjct: 380 NQKWRLTKGSLVIAKGVARGTLY 402

[Close]
BLAST of CsaV3_5G020070 vs. TrEMBL
Match: tr|A0A2I0WB13|A0A2I0WB13_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catenatum OX=906689 GN=MA16_Dca013638 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.8e-19
Identity = 61/143 (42.66%), Postives = 85/143 (59.44%), Query Frame = 0 

Query: 39  KNDTLRKNCPLNKSKKASSSQYATETSAANVTDGCDSTEVLMGLIGILRMLGSWIQGDNG 98
           K   +R+ CP    K  S SQ      AA V +  DS +VL         +   + G+N 
Sbjct: 217 KTGHIRRFCPEKNPKDKSQSQ----GDAAIVGENYDSADVL--------NVSDLLLGNNK 276

Query: 99  TCDVKGIGSVQIATHDGIIRVLTNVSYVPELKCNLISLGDLERSIYTYKSENGVLKVSKD 158
            CDV GIGS+ +  HDG +R+L +V +VP+LK NLISLG L+ S Y ++SE G+L++SK 
Sbjct: 277 ACDVVGIGSIAVKMHDGHVRILKDVRHVPDLKRNLISLGTLDDSGYIFRSERGLLRISKG 336

Query: 159 SLVKSRGTLRNGLYVLEGTAVSG 182
           +LV  +G  RNGLYVL+G  + G
Sbjct: 337 ALVIMKGIKRNGLYVLQGATLVG 347

[Close]
BLAST of CsaV3_5G020070 vs. TrEMBL
Match: tr|A0A1S3YZF2|A0A1S3YZF2_TOBAC (uncharacterized mitochondrial protein AtMg00300-like OS=Nicotiana tabacum OX=4097 GN=LOC107781394 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = 0 

Query: 90  GSWIQGDNGTCDVKGIGSVQIATHDGIIRVLTNVSYVPELKCNLISLGDLERSIYTYKSE 149
           G+ + G+N TC + GIGSV++  HDG++R +T V +VP+LK NLISL  L+   Y Y SE
Sbjct: 16  GTVVMGNNATCAIVGIGSVRVRCHDGVVRTITQVRHVPDLKKNLISLSTLDEQGYRYMSE 75

Query: 150 NGVLKVSKDSLVKSRGTLRNGLYVLEGTAVSGSA 184
            G +KV+K SLV  +G L NGLY L G+ + GSA
Sbjct: 76  AGTIKVTKGSLVMLKGKLENGLYTLAGSTIVGSA 109

[Close]
BLAST of CsaV3_5G020070 vs. TrEMBL
Match: tr|A0A2P5EJ05|A0A2P5EJ05_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_186730 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.7e-17
Identity = 50/94 (53.19%), Postives = 64/94 (68.09%), Query Frame = 0 

Query: 90  GSWIQGDNGTCDVKGIGSVQIATHDGIIRVLTNVSYVPELKCNLISLGDLERSIYTYKSE 149
           G  + G+N  C V GIG+V+I  HDG+ RVL NV Y+PELK NLISLG L+   Y+YK+E
Sbjct: 17  GQVLLGNNKGCKVVGIGTVRIKMHDGVERVLENVRYLPELKRNLISLGTLDSKGYSYKAE 76

Query: 150 NGVLKVSKDSLVKSRGTLRNGLYVLEGTAVSGSA 184
            G L+VS+  L   +G   NGLYVL+G  V+G A
Sbjct: 77  GGHLRVSRGCLAVIKGVKENGLYVLQGNTVNGVA 110

[Close]
BLAST of CsaV3_5G020070 vs. TrEMBL
Match: tr|A0A151TDZ5|A0A151TDZ5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_011458 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.7e-17
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = 0 

Query: 90  GSWIQGDNGTCDVKGIGSVQIATHDGIIRVLTNVSYVPELKCNLISLGDLERSIYTYKSE 149
           G  + GDN  C +KGIGS++   HDGI RVL +V YVP+LK NLISLG+ ++  Y ++ +
Sbjct: 294 GLVLLGDNKPCKIKGIGSIRFRFHDGIERVLADVRYVPDLKRNLISLGEFDKKGYVFQGQ 353

Query: 150 NGVLKVSKDSLVKSRGTLRNGLYVLEGTAVSGSA 184
            G+L V K+ +V  RG ++NGLY ++G  ++GSA
Sbjct: 354 EGILNVVKNYVVVMRGIMKNGLYSVDGEVITGSA 387

[Close]
BLAST of CsaV3_5G020070 vs. TrEMBL
Match: tr|A0A2P5CAU7|A0A2P5CAU7_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_167780 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.5e-17
Identity = 47/94 (50.00%), Postives = 65/94 (69.15%), Query Frame = 0 

Query: 90  GSWIQGDNGTCDVKGIGSVQIATHDGIIRVLTNVSYVPELKCNLISLGDLERSIYTYKSE 149
           G  + G+N  C V GIGS+ +   DG+ R+L NV +VPELK NLISL  L+ S Y +K+E
Sbjct: 25  GKVLMGNNVACKVMGIGSISMRMFDGVTRILKNVGHVPELKRNLISLDTLDESGYGFKAE 84

Query: 150 NGVLKVSKDSLVKSRGTLRNGLYVLEGTAVSGSA 184
           NG LKVSK ++V  +G  +NGLY+L+G+ V  +A
Sbjct: 85  NGQLKVSKGAMVVMKGFKKNGLYILQGSTVKAAA 118

The following BLAST results are available for this feature:
BLAST of CsaV3_5G020070 vs. NCBI nr
Match NameE-valueIdentityDescription
PKU72844.17.3e-1942.66Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Dendrobium catenatu... [more]
XP_016457574.12.1e-1851.06PREDICTED: uncharacterized mitochondrial protein AtMg00300-like [Nicotiana tabac... [more]
KYP65226.14.0e-1747.87Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
PON85524.14.0e-1753.19hypothetical protein TorRG33x02_186730 [Trema orientalis][more]
PON58179.16.8e-1750.00hypothetical protein PanWU01x14_167780 [Parasponia andersonii][more]
BLAST of CsaV3_5G020070 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G020070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P10978|POLX_TOBAC7.0e-0536.14Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of CsaV3_5G020070 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2I0WB13|A0A2I0WB13_9ASPA4.8e-1942.66Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Dendrobium catena... [more]
tr|A0A1S3YZF2|A0A1S3YZF2_TOBAC1.4e-1851.06uncharacterized mitochondrial protein AtMg00300-like OS=Nicotiana tabacum OX=409... [more]
tr|A0A2P5EJ05|A0A2P5EJ05_9ROSA2.7e-1753.19Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_186730 PE=4 S... [more]
tr|A0A151TDZ5|A0A151TDZ5_CAJCA2.7e-1747.87Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=... [more]
tr|A0A2P5CAU7|A0A2P5CAU7_PARAD4.5e-1750.00Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_167780 PE... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0090304 nucleic acid metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005488 binding
molecular_function GO:0016787 hydrolase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G020070.1CsaV3_5G020070.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G020070CSPI05G13490Wild cucumber (PI 183967)cpicucB288
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G020070Silver-seed gourdcarcucB0868
CsaV3_5G020070Cucumber (Gy14) v2cgybcucB232
CsaV3_5G020070Cucumber (Gy14) v1cgycucB064
CsaV3_5G020070Cucurbita maxima (Rimu)cmacucB0358
CsaV3_5G020070Cucurbita moschata (Rifu)cmocucB0353
CsaV3_5G020070Cucurbita pepo (Zucchini)cpecucB0215
CsaV3_5G020070Bottle gourd (USVL1VR-Ls)cuclsiB348
CsaV3_5G020070Melon (DHL92) v3.5.1cucmeB364
CsaV3_5G020070Watermelon (Charleston Gray)cucwcgB388
CsaV3_5G020070Melon (DHL92) v3.6.1cucmedB355
CsaV3_5G020070Watermelon (97103) v1cucwmB437
CsaV3_5G020070Watermelon (97103) v2cucwmbB354
CsaV3_5G020070Wax gourdcucwgoB450
CsaV3_5G020070Wax gourdcucwgoB452