CsaV3_5G020000 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G020000
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Transposase, Ptta/En/Spm
Location	chr5 : 14626548 .. 14627476 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAATTTGTAAGGTCTAGATTGTGTGAAACTTTTCAGGTATGTTACTTTCTCACTAACAAATATATTTGTAAGGTTTAGATTGTGTGTTACTTTCTCACTAACAATATTTTTGGAAAATAGGAAAAAAGACTTCTGCAACAAGATAGACGATCTAAGAACAAGTATAACCATAGGATTTCGAGGAAGGGTTATGTCAATCTTATCGAGGAAATGGTAAGAACTAATTTATTAAGTTTATCAAACTTTATCAAAGGTTGTTCTAATCTTATTATGGAATTGGAATGTAGAAAAGGAAGGTTCAAATCAACCGGAGTTGGATCGAGTCATCATGTGGAAAAAGGCTCGAGTTAACAAAAAAATGGGAGTATGAGAACGACGACGTTCAACAAGTTGTCCATAAAATTGTAAGACTTTTTGTATATTGAACATTTGAACTAGATTGGTTTTGTTTACACATTTCTATAACTTAGATTGGTTTTTGTTTTAGGATGAGATTTCAATGAATACGTCTTCATCGTCTCAAAAAGGACACTCTTCTAACGATGTGTTAACCCACGCATTGGGTACAAAAGAGCATCACGGTCGTGTTCGTGGGGTCGGTGGGTATGTTACTCCTACCAATTACATTCATTCTGTAAAAAAGACTATTTAATTATCATTCTTAAATTTATTATCTATTATAATTAGACCTCGAAATATATCATCATTTTTTCTTTTCTTTTTTTGTGATAAATTTGTTGGAAAATTGAAATATACCTCTCTCATTGATTATTGTGTTGTAAAATTTTCATATCTTTATGTGCACTTAATAAATATACCGTAGTTTATTAAATACGGTAGGTTTGTATACCTAAAATTTCATATTTGTATTTACTTTCATTATAGTTCATAAGTAAAGGTTATGTTTTGGTGTATTAATCTACTTTTG

mRNA sequence

GAATTTGTAAGGTCTAGATTGTGTGAAACTTTTCAGGAAAAAAGACTTCTGCAACAAGATAGACGATCTAAGAACAAGTATAACCATAGGATTTCGAGGAAGGGTTATGTCAATCTTATCGAGGAAATGAAAAGGAAGGTTCAAATCAACCGGAGTTGGATCGAGTCATCATGTGGAAAAAGGCTCGAGTTAACAAAAAAATGGGAGTATGAGAACGACGACGTTCAACAAGTTGTCCATAAAATTGATGAGATTTCAATGAATACGTCTTCATCGTCTCAAAAAGGACACTCTTCTAACGATGTGTTAACCCACGCATTGGGTACAAAAGAGCATCACGGTCGTGTTCGTGGGGTCGGTGGGTATGTTACTCCTACCAATTACATTCATTCTGTAAAAAAGACTATTTAA

Coding sequence (CDS)

GAATTTGTAAGGTCTAGATTGTGTGAAACTTTTCAGGAAAAAAGACTTCTGCAACAAGATAGACGATCTAAGAACAAGTATAACCATAGGATTTCGAGGAAGGGTTATGTCAATCTTATCGAGGAAATGAAAAGGAAGGTTCAAATCAACCGGAGTTGGATCGAGTCATCATGTGGAAAAAGGCTCGAGTTAACAAAAAAATGGGAGTATGAGAACGACGACGTTCAACAAGTTGTCCATAAAATTGATGAGATTTCAATGAATACGTCTTCATCGTCTCAAAAAGGACACTCTTCTAACGATGTGTTAACCCACGCATTGGGTACAAAAGAGCATCACGGTCGTGTTCGTGGGGTCGGTGGGTATGTTACTCCTACCAATTACATTCATTCTGTAAAAAAGACTATTTAA

Protein sequence

EFVRSRLCETFQEKRLLQQDRRSKNKYNHRISRKGYVNLIEEMKRKVQINRSWIESSCGKRLELTKKWEYENDDVQQVVHKIDEISMNTSSSSQKGHSSNDVLTHALGTKEHHGRVRGVGGYVTPTNYIHSVKKTI

Homology

[Close]

BLAST of CsaV3_5G020000 vs. NCBI nr
Match: XP_016903309.1 (PREDICTED: uncharacterized protein LOC107992120 [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 4.0e-22
Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 60  KRLELTKKWEYENDDVQQVVHKIDEISMNTSSSSQKGHSSNDVLTHALGTKEHHGRVRGV 119
           K+  + K+ + +NDD+QQVVHKIDEISMNT SSS   H SNDVLT ALGTKEH+GRVRGV
Sbjct: 18  KKARVNKQGQCDNDDIQQVVHKIDEISMNTDSSSVNRHYSNDVLTQALGTKEHNGRVRGV 77

Query: 120 GGYVTPTNYIHSVKKT 136
           GGYVTPT Y HSVKKT
Sbjct: 78  GGYVTPTTYFHSVKKT 93

[Close]

BLAST of CsaV3_5G020000 vs. NCBI nr
Match: PIA35548.1 (hypothetical protein AQUCO_03500122v1 [Aquilegia coerulea])

HSP 1 Score: 97.1 bits (240), Expect = 5.1e-17
Identity = 55/134 (41.04%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 2   FVRSRLCETFQEKRLLQQDRRSKNKYNHRISRKGYVNLIEEMKRKVQINRSWIE-SSCGK 61
           FV+SRL E FQ K  LQ +RR+KN YNHR+ RKGYV L+EE+K+ +  +   ++     K
Sbjct: 309 FVKSRLSEDFQAKSKLQSERRAKNIYNHRLGRKGYVGLVEELKQSLGTSVDKLDRCDLWK 368

Query: 62  RLELTKKWEYENDDVQQVVHKIDEISMNTSSSSQKGHSSNDVLTHALGTKEHHGRVRGVG 121
           +    KK  Y +D V++    IDE++      +     ++D+LT ALGT EH GRVR  G
Sbjct: 369 KARQNKKGLYLDDAVREKAELIDELTKQKKDGNLVIQVNDDILTLALGTPEHSGRVRAAG 428

Query: 122 GYVTPTNYIHSVKK 135
            ++TP  Y +  K+
Sbjct: 429 PFITPAAYFNHPKR 442

[Close]

BLAST of CsaV3_5G020000 vs. NCBI nr
Match: PIA35546.1 (hypothetical protein AQUCO_03500122v1 [Aquilegia coerulea])

HSP 1 Score: 97.1 bits (240), Expect = 5.1e-17
Identity = 55/134 (41.04%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 2   FVRSRLCETFQEKRLLQQDRRSKNKYNHRISRKGYVNLIEEMKRKVQINRSWIE-SSCGK 61
           FV+SRL E FQ K  LQ +RR+KN YNHR+ RKGYV L+EE+K+ +  +   ++     K
Sbjct: 309 FVKSRLSEDFQAKSKLQSERRAKNIYNHRLGRKGYVGLVEELKQSLGTSVDKLDRCDLWK 368

Query: 62  RLELTKKWEYENDDVQQVVHKIDEISMNTSSSSQKGHSSNDVLTHALGTKEHHGRVRGVG 121
           +    KK  Y +D V++    IDE++      +     ++D+LT ALGT EH GRVR  G
Sbjct: 369 KARQNKKGLYLDDAVREKAELIDELTKQKKDGNLVIQVNDDILTLALGTPEHSGRVRAAG 428

Query: 122 GYVTPTNYIHSVKK 135
            ++TP  Y +  K+
Sbjct: 429 PFITPAAYFNHPKR 442

[Close]

BLAST of CsaV3_5G020000 vs. NCBI nr
Match: PIA35544.1 (hypothetical protein AQUCO_03500122v1 [Aquilegia coerulea])

HSP 1 Score: 97.1 bits (240), Expect = 5.1e-17
Identity = 55/134 (41.04%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 2   FVRSRLCETFQEKRLLQQDRRSKNKYNHRISRKGYVNLIEEMKRKVQINRSWIE-SSCGK 61
           FV+SRL E FQ K  LQ +RR+KN YNHR+ RKGYV L+EE+K+ +  +   ++     K
Sbjct: 86  FVKSRLSEDFQAKSKLQSERRAKNIYNHRLGRKGYVGLVEELKQSLGTSVDKLDRCDLWK 145

Query: 62  RLELTKKWEYENDDVQQVVHKIDEISMNTSSSSQKGHSSNDVLTHALGTKEHHGRVRGVG 121
           +    KK  Y +D V++    IDE++      +     ++D+LT ALGT EH GRVR  G
Sbjct: 146 KARQNKKGLYLDDAVREKAELIDELTKQKKDGNLVIQVNDDILTLALGTPEHSGRVRAAG 205

Query: 122 GYVTPTNYIHSVKK 135
            ++TP  Y +  K+
Sbjct: 206 PFITPAAYFNHPKR 219

[Close]

BLAST of CsaV3_5G020000 vs. NCBI nr
Match: PIA35545.1 (hypothetical protein AQUCO_03500122v1 [Aquilegia coerulea] >PIA35547.1 hypothetical protein AQUCO_03500122v1 [Aquilegia coerulea])

HSP 1 Score: 97.1 bits (240), Expect = 5.1e-17
Identity = 55/134 (41.04%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 2   FVRSRLCETFQEKRLLQQDRRSKNKYNHRISRKGYVNLIEEMKRKVQINRSWIE-SSCGK 61
           FV+SRL E FQ K  LQ +RR+KN YNHR+ RKGYV L+EE+K+ +  +   ++     K
Sbjct: 309 FVKSRLSEDFQAKSKLQSERRAKNIYNHRLGRKGYVGLVEELKQSLGTSVDKLDRCDLWK 368

Query: 62  RLELTKKWEYENDDVQQVVHKIDEISMNTSSSSQKGHSSNDVLTHALGTKEHHGRVRGVG 121
           +    KK  Y +D V++    IDE++      +     ++D+LT ALGT EH GRVR  G
Sbjct: 369 KARQNKKGLYLDDAVREKAELIDELTKQKKDGNLVIQVNDDILTLALGTPEHSGRVRAAG 428

Query: 122 GYVTPTNYIHSVKK 135
            ++TP  Y +  K+
Sbjct: 429 PFITPAAYFNHPKR 442

[Close]

BLAST of CsaV3_5G020000 vs. TrEMBL
Match: tr|A0A1S4E506|A0A1S4E506_CUCME (uncharacterized protein LOC107992120 OS=Cucumis melo OX=3656 GN=LOC107992120 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.7e-22
Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 60  KRLELTKKWEYENDDVQQVVHKIDEISMNTSSSSQKGHSSNDVLTHALGTKEHHGRVRGV 119
           K+  + K+ + +NDD+QQVVHKIDEISMNT SSS   H SNDVLT ALGTKEH+GRVRGV
Sbjct: 18  KKARVNKQGQCDNDDIQQVVHKIDEISMNTDSSSVNRHYSNDVLTQALGTKEHNGRVRGV 77

Query: 120 GGYVTPTNYIHSVKKT 136
           GGYVTPT Y HSVKKT
Sbjct: 78  GGYVTPTTYFHSVKKT 93

[Close]

BLAST of CsaV3_5G020000 vs. TrEMBL
Match: tr|A0A2G5CX95|A0A2G5CX95_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.4e-17
Identity = 55/134 (41.04%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 2   FVRSRLCETFQEKRLLQQDRRSKNKYNHRISRKGYVNLIEEMKRKVQINRSWIE-SSCGK 61
           FV+SRL E FQ K  LQ +RR+KN YNHR+ RKGYV L+EE+K+ +  +   ++     K
Sbjct: 309 FVKSRLSEDFQAKSKLQSERRAKNIYNHRLGRKGYVGLVEELKQSLGTSVDKLDRCDLWK 368

Query: 62  RLELTKKWEYENDDVQQVVHKIDEISMNTSSSSQKGHSSNDVLTHALGTKEHHGRVRGVG 121
           +    KK  Y +D V++    IDE++      +     ++D+LT ALGT EH GRVR  G
Sbjct: 369 KARQNKKGLYLDDAVREKAELIDELTKQKKDGNLVIQVNDDILTLALGTPEHSGRVRAAG 428

Query: 122 GYVTPTNYIHSVKK 135
            ++TP  Y +  K+
Sbjct: 429 PFITPAAYFNHPKR 442

[Close]

BLAST of CsaV3_5G020000 vs. TrEMBL
Match: tr|A0A2G5CW99|A0A2G5CW99_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.4e-17
Identity = 55/134 (41.04%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 2   FVRSRLCETFQEKRLLQQDRRSKNKYNHRISRKGYVNLIEEMKRKVQINRSWIE-SSCGK 61
           FV+SRL E FQ K  LQ +RR+KN YNHR+ RKGYV L+EE+K+ +  +   ++     K
Sbjct: 309 FVKSRLSEDFQAKSKLQSERRAKNIYNHRLGRKGYVGLVEELKQSLGTSVDKLDRCDLWK 368

Query: 62  RLELTKKWEYENDDVQQVVHKIDEISMNTSSSSQKGHSSNDVLTHALGTKEHHGRVRGVG 121
           +    KK  Y +D V++    IDE++      +     ++D+LT ALGT EH GRVR  G
Sbjct: 369 KARQNKKGLYLDDAVREKAELIDELTKQKKDGNLVIQVNDDILTLALGTPEHSGRVRAAG 428

Query: 122 GYVTPTNYIHSVKK 135
            ++TP  Y +  K+
Sbjct: 429 PFITPAAYFNHPKR 442

[Close]

BLAST of CsaV3_5G020000 vs. TrEMBL
Match: tr|A0A2G5CW92|A0A2G5CW92_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.4e-17
Identity = 55/134 (41.04%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 2   FVRSRLCETFQEKRLLQQDRRSKNKYNHRISRKGYVNLIEEMKRKVQINRSWIE-SSCGK 61
           FV+SRL E FQ K  LQ +RR+KN YNHR+ RKGYV L+EE+K+ +  +   ++     K
Sbjct: 86  FVKSRLSEDFQAKSKLQSERRAKNIYNHRLGRKGYVGLVEELKQSLGTSVDKLDRCDLWK 145

Query: 62  RLELTKKWEYENDDVQQVVHKIDEISMNTSSSSQKGHSSNDVLTHALGTKEHHGRVRGVG 121
           +    KK  Y +D V++    IDE++      +     ++D+LT ALGT EH GRVR  G
Sbjct: 146 KARQNKKGLYLDDAVREKAELIDELTKQKKDGNLVIQVNDDILTLALGTPEHSGRVRAAG 205

Query: 122 GYVTPTNYIHSVKK 135
            ++TP  Y +  K+
Sbjct: 206 PFITPAAYFNHPKR 219

[Close]

BLAST of CsaV3_5G020000 vs. TrEMBL
Match: tr|A0A2G5CW86|A0A2G5CW86_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.4e-17
Identity = 55/134 (41.04%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 2   FVRSRLCETFQEKRLLQQDRRSKNKYNHRISRKGYVNLIEEMKRKVQINRSWIE-SSCGK 61
           FV+SRL E FQ K  LQ +RR+KN YNHR+ RKGYV L+EE+K+ +  +   ++     K
Sbjct: 309 FVKSRLSEDFQAKSKLQSERRAKNIYNHRLGRKGYVGLVEELKQSLGTSVDKLDRCDLWK 368

Query: 62  RLELTKKWEYENDDVQQVVHKIDEISMNTSSSSQKGHSSNDVLTHALGTKEHHGRVRGVG 121
           +    KK  Y +D V++    IDE++      +     ++D+LT ALGT EH GRVR  G
Sbjct: 369 KARQNKKGLYLDDAVREKAELIDELTKQKKDGNLVIQVNDDILTLALGTPEHSGRVRAAG 428

Query: 122 GYVTPTNYIHSVKK 135
            ++TP  Y +  K+
Sbjct: 429 PFITPAAYFNHPKR 442

The following BLAST results are available for this feature:

BLAST of CsaV3_5G020000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903309.1	4.0e-22	73.68	PREDICTED: uncharacterized protein LOC107992120 [Cucumis melo]	[more]
PIA35548.1	5.1e-17	41.04	hypothetical protein AQUCO_03500122v1 [Aquilegia coerulea]	[more]
PIA35546.1	5.1e-17	41.04	hypothetical protein AQUCO_03500122v1 [Aquilegia coerulea]	[more]
PIA35544.1	5.1e-17	41.04	hypothetical protein AQUCO_03500122v1 [Aquilegia coerulea]	[more]
PIA35545.1	5.1e-17	41.04	hypothetical protein AQUCO_03500122v1 [Aquilegia coerulea] >PIA35547.1 hypotheti...	[more]

BLAST of CsaV3_5G020000 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G020000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G020000 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E506\|A0A1S4E506_CUCME	2.7e-22	73.68	uncharacterized protein LOC107992120 OS=Cucumis melo OX=3656 GN=LOC107992120 PE=...	[more]
tr\|A0A2G5CX95\|A0A2G5CX95_AQUCA	3.4e-17	41.04	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4...	[more]
tr\|A0A2G5CW99\|A0A2G5CW99_AQUCA	3.4e-17	41.04	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4...	[more]
tr\|A0A2G5CW92\|A0A2G5CW92_AQUCA	3.4e-17	41.04	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4...	[more]
tr\|A0A2G5CW86\|A0A2G5CW86_AQUCA	3.4e-17	41.04	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03500122v1 PE=4...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G020000.1	CsaV3_5G020000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33018	FAMILY NOT NAMED	coord: 1..125

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G020000	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G020000	Cucurbita maxima (Rimu)	cmacucB0356
CsaV3_5G020000	Cucurbita maxima (Rimu)	cmacucB0864
CsaV3_5G020000	Cucurbita moschata (Rifu)	cmocucB0351
CsaV3_5G020000	Cucurbita moschata (Rifu)	cmocucB0850
CsaV3_5G020000	Cucurbita pepo (Zucchini)	cpecucB0213
CsaV3_5G020000	Cucurbita pepo (Zucchini)	cpecucB0522
CsaV3_5G020000	Bottle gourd (USVL1VR-Ls)	cuclsiB346
CsaV3_5G020000	Melon (DHL92) v3.5.1	cucmeB361
CsaV3_5G020000	Melon (DHL92) v3.6.1	cucmedB353
CsaV3_5G020000	Watermelon (Charleston Gray)	cucwcgB386
CsaV3_5G020000	Watermelon (97103) v1	cucwmB434
CsaV3_5G020000	Wax gourd	cucwgoB450
CsaV3_5G020000	Silver-seed gourd	carcucB0515
CsaV3_5G020000	Silver-seed gourd	carcucB0866