CsaV3_5G017310 (gene) Cucumber (Chinese Long) v3

NameCsaV3_5G017310
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 13901705 .. 13902073 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGTGCCAATGGTGGTGGTTTCCTTTAAAGACCGAAGTCATGGCCACAACGAGTTTGAGGTGTGGGAGATATGTTGCAGTGATTGAGGTGAACATTGTTGATGTGTCGGATGGCAGAGGGAGCGAAGCACGTGTGGGTTCTTTGTGGTGGTTAGAGAAAATCTATGTTGCACGCTTGTGATTGATATTGTAGAGGTTTTGGGAGAGGTGAATAGTGTTCCATCAAAGAATGTTGCAACAATCACAAGGTTAGAAAAAGGTGAGAATGAGATTATGGTGAAGAAGATAGTGAAGGAGACAAACATAAAAATTGTGAATACTTGTATCGACGTAATAACAAATGCAACGAAAATGAATTGTTGCTAA

mRNA sequence

ATGGGAGTGCCAATGGTGGTGGTTTCCTTTAAAGACCGAAGTCATGGCCACAACGAGTTTGAGAGGGAGCGAAGCACGTGTGGGTTCTTTGTGGTGGTTAGAGAAAATCTATGTTGCACGCTTGTGATTGATATTGTAGAGGTTTTGGGAGAGGTGAATAGTGTTCCATCAAAGAATGTTGCAACAATCACAAGGTTAGAAAAAGGTGAGAATGAGATTATGGTGAAGAAGATAGTGAAGGAGACAAACATAAAAATTGTGAATACTTGTATCGACGTAATAACAAATGCAACGAAAATGAATTGTTGCTAA

Coding sequence (CDS)

ATGGGAGTGCCAATGGTGGTGGTTTCCTTTAAAGACCGAAGTCATGGCCACAACGAGTTTGAGAGGGAGCGAAGCACGTGTGGGTTCTTTGTGGTGGTTAGAGAAAATCTATGTTGCACGCTTGTGATTGATATTGTAGAGGTTTTGGGAGAGGTGAATAGTGTTCCATCAAAGAATGTTGCAACAATCACAAGGTTAGAAAAAGGTGAGAATGAGATTATGGTGAAGAAGATAGTGAAGGAGACAAACATAAAAATTGTGAATACTTGTATCGACGTAATAACAAATGCAACGAAAATGAATTGTTGCTAA

Protein sequence

MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNVATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC
BLAST of CsaV3_5G017310 vs. NCBI nr
Match: KGN49750.1 (hypothetical protein Csa_5G106000 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 3.5e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNV 60
           MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNV
Sbjct: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNV 60

Query: 61  ATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC 104
           ATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC
Sbjct: 61  ATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC 103

BLAST of CsaV3_5G017310 vs. NCBI nr
Match: XP_022992583.1 (glutamate decarboxylase 4-like [Cucurbita maxima])

HSP 1 Score: 71.2 bits (173), Expect = 2.3e-09
Identity = 51/129 (39.53%), Postives = 70/129 (54.26%), Query Frame = 0

Query: 1   MGVPMVVVSFKDRSHGHNEFE-------------------RERSTCGFFVVVREN----L 60
           +GVP+V    KDRS  H+EFE                     +      VVVRE+    L
Sbjct: 372 IGVPVVAFCLKDRS-THDEFEVSVMLRRFGWIVPAYRMPKDAKHVSVLRVVVREDFSRAL 431

Query: 61  CCTLVIDIVEVLGEVNSVPSKNVATITRLEKGE---NEIMVKKIVKETNIKIVNTCIDVI 104
              L++DI++VL E++++PSKN A  T L K E   N+  VKK  +ET ++IVN  ID+I
Sbjct: 432 AERLLVDIIKVLAELDTLPSKNAAKATALAKDEDAANDSAVKKTAEETEMEIVNAWIDMI 491

BLAST of CsaV3_5G017310 vs. NCBI nr
Match: XP_023551690.1 (glutamate decarboxylase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.2 bits (160), Expect = 7.3e-08
Identity = 49/129 (37.98%), Postives = 69/129 (53.49%), Query Frame = 0

Query: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGF-------------------FVVVREN----L 60
           +GVP+V  S KDRS  H+EF+       F                    VVVRE+    L
Sbjct: 372 IGVPVVAFSLKDRS-THDEFKVSEMLRRFGWIVPAYRMPKGAKHVSVLRVVVREDFSRAL 431

Query: 61  CCTLVIDIVEVLGEVNSVPSKNVATITRLEKGE---NEIMVKKIVKETNIKIVNTCIDVI 104
              L++DI++VL E++++P K+ A    L K E   N+  VKK  +ET ++IVN  ID+I
Sbjct: 432 AERLLVDIIKVLAELDTLPPKSAAKAIALAKDEDAANDSAVKKTAEETEMEIVNAWIDMI 491

BLAST of CsaV3_5G017310 vs. NCBI nr
Match: XP_022939914.1 (glutamate decarboxylase-like [Cucurbita moschata])

HSP 1 Score: 65.9 bits (159), Expect = 9.5e-08
Identity = 49/129 (37.98%), Postives = 68/129 (52.71%), Query Frame = 0

Query: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGF-------------------FVVVREN----L 60
           +GVP+V    KDRS  H+EFE       F                    VVVRE+    L
Sbjct: 372 IGVPVVAFCLKDRS-THDEFEVSEMLRRFGWIVPAYRMPKGAKHVSVLRVVVREDFSRAL 431

Query: 61  CCTLVIDIVEVLGEVNSVPSKNVATITRLEKGE---NEIMVKKIVKETNIKIVNTCIDVI 104
              L++DI++VL E++++P K+ A    L K E   N+  VKK  +ET ++IVN  ID+I
Sbjct: 432 AERLLVDIIKVLAELDTLPPKSAAKAIALAKDEDAANDSAVKKTAEETEMEIVNAWIDMI 491

BLAST of CsaV3_5G017310 vs. TrEMBL
Match: tr|A0A0A0KJ37|A0A0A0KJ37_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G106000 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.3e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNV 60
           MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNV
Sbjct: 1   MGVPMVVVSFKDRSHGHNEFERERSTCGFFVVVRENLCCTLVIDIVEVLGEVNSVPSKNV 60

Query: 61  ATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC 104
           ATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC
Sbjct: 61  ATITRLEKGENEIMVKKIVKETNIKIVNTCIDVITNATKMNCC 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49750.13.5e-50100.00hypothetical protein Csa_5G106000 [Cucumis sativus][more]
XP_022992583.12.3e-0939.53glutamate decarboxylase 4-like [Cucurbita maxima][more]
XP_023551690.17.3e-0837.98glutamate decarboxylase-like [Cucurbita pepo subsp. pepo][more]
XP_022939914.19.5e-0837.98glutamate decarboxylase-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KJ37|A0A0A0KJ37_CUCSA2.3e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G106000 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G017310.1CsaV3_5G017310.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None