CsaV3_5G015600 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G015600
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5 : 13010697 .. 13010906 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACACTTCTCCACCTCCGACACAGCATCATTACAACCTCTTTATTGTTCTTCCGCACAACTTTTCCATTTCTGGCACAACGACTCCTACGGCACCATTCACGCGACCCCAACCACACAAGAATCGACCGACACCAACAACCATAGCGTTGAGCATGCCACTAAAGTTGGGCGAGAGCAACGTCAACAATATCGAGCAAGACACTAA

mRNA sequence

ATGTCACACTTCTCCACCTCCGACACAGCATCATTACAACCTCTTTATTGTTCTTCCGCACAACTTTTCCATTTCTGGCACAACGACTCCTACGGCACCATTCACGCGACCCCAACCACACAAGAATCGACCGACACCAACAACCATAGCGTTGAGCATGCCACTAAAGTTGGGCGAGAGCAACGTCAACAATATCGAGCAAGACACTAA

Coding sequence (CDS)

ATGTCACACTTCTCCACCTCCGACACAGCATCATTACAACCTCTTTATTGTTCTTCCGCACAACTTTTCCATTTCTGGCACAACGACTCCTACGGCACCATTCACGCGACCCCAACCACACAAGAATCGACCGACACCAACAACCATAGCGTTGAGCATGCCACTAAAGTTGGGCGAGAGCAACGTCAACAATATCGAGCAAGACACTAA

Protein sequence

MSHFSTSDTASLQPLYCSSAQLFHFWHNDSYGTIHATPTTQESTDTNNHSVEHATKVGREQRQQYRARH

Homology

[Close]

BLAST of CsaV3_5G015600 vs. NCBI nr
Match: KGN49697.1 (hypothetical protein Csa_5G074690 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 3.2e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSHFSTSDTASLQPLYCSSAQLFHFWHNDSYGTIHATPTTQESTDTNNHSVEHATKVGRE 60
          MSHFSTSDTASLQPLYCSSAQLFHFWHNDSYGTIHATPTTQESTDTNNHSVEHATKVGRE
Sbjct: 1  MSHFSTSDTASLQPLYCSSAQLFHFWHNDSYGTIHATPTTQESTDTNNHSVEHATKVGRE 60

Query: 61 QRQQYRARH 70
          QRQQYRARH
Sbjct: 61 QRQQYRARH 69

[Close]

BLAST of CsaV3_5G015600 vs. TrEMBL
Match: tr|A0A0A0KMR0|A0A0A0KMR0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G074690 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.1e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSHFSTSDTASLQPLYCSSAQLFHFWHNDSYGTIHATPTTQESTDTNNHSVEHATKVGRE 60
          MSHFSTSDTASLQPLYCSSAQLFHFWHNDSYGTIHATPTTQESTDTNNHSVEHATKVGRE
Sbjct: 1  MSHFSTSDTASLQPLYCSSAQLFHFWHNDSYGTIHATPTTQESTDTNNHSVEHATKVGRE 60

Query: 61 QRQQYRARH 70
          QRQQYRARH
Sbjct: 61 QRQQYRARH 69

The following BLAST results are available for this feature:

BLAST of CsaV3_5G015600 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49697.1	3.2e-31	100.00	hypothetical protein Csa_5G074690 [Cucumis sativus]	[more]

BLAST of CsaV3_5G015600 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G015600 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G015600 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KMR0\|A0A0A0KMR0_CUCSA	2.1e-31	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G074690 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G015600.1	CsaV3_5G015600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..69

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G015600	CSPI05G01590	Wild cucumber (PI 183967)	cpicucB286

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G015600	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G015600	Cucumber (Gy14) v1	cgycucB295
CsaV3_5G015600	Cucurbita maxima (Rimu)	cmacucB0903
CsaV3_5G015600	Cucurbita moschata (Rifu)	cmocucB0895
CsaV3_5G015600	Bottle gourd (USVL1VR-Ls)	cuclsiB362
CsaV3_5G015600	Melon (DHL92) v3.5.1	cucmeB388
CsaV3_5G015600	Melon (DHL92) v3.6.1	cucmedB381
CsaV3_5G015600	Watermelon (Charleston Gray)	cucwcgB383
CsaV3_5G015600	Watermelon (97103) v1	cucwmB461
CsaV3_5G015600	Watermelon (97103) v2	cucwmbB378