CsaV3_5G015430 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G015430
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5 : 12808167 .. 12808456 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGTGACAACGTGATGATATTAGTGGATGTGGTTGTCGACGGTGATTGCTCCGTTCCTATTCCAACAAGGAAAGGTGTGACAATGCTTTACCAAGAAATCAGTTCACAATTGTTATGGCCTCGTCATTTGGTCATTCCTCAAGACGAGAAGGTAATATGGTTCTTATTGAGTTATTTGATTTGAATATATTTCATATGGTTGACATTTTATGTTTGTAGCAACAGAGGAAAAACGAGTTCATCCAAGCTGATGAACGAGCACCATCACCGATCCAGACTAGGTAG

mRNA sequence

ATGGACGGTGACAACGTGATGATATTAGTGGATGTGGTTGTCGACGGTGATTGCTCCGTTCCTATTCCAACAAGGAAAGGTGTGACAATGCTTTACCAAGAAATCAGTTCACAATTGTTATGGCCTCGTCATTTGGTCATTCCTCAAGACGAGAAGCAACAGAGGAAAAACGAGTTCATCCAAGCTGATGAACGAGCACCATCACCGATCCAGACTAGGTAG

Coding sequence (CDS)

ATGGACGGTGACAACGTGATGATATTAGTGGATGTGGTTGTCGACGGTGATTGCTCCGTTCCTATTCCAACAAGGAAAGGTGTGACAATGCTTTACCAAGAAATCAGTTCACAATTGTTATGGCCTCGTCATTTGGTCATTCCTCAAGACGAGAAGCAACAGAGGAAAAACGAGTTCATCCAAGCTGATGAACGAGCACCATCACCGATCCAGACTAGGTAG

Protein sequence

MDGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEKQQRKNEFIQADERAPSPIQTR

Homology

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BLAST of CsaV3_5G015430 vs. NCBI nr
Match: KGN49682.1 (hypothetical protein Csa_5G065650 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 4.7e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MDGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEKQQRKNEFI 60
          MDGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEKQQRKNEFI
Sbjct: 1  MDGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEKQQRKNEFI 60

Query: 61 QADERAPSPIQTR 74
          QADERAPSPIQTR
Sbjct: 61 QADERAPSPIQTR 73

[Close]

BLAST of CsaV3_5G015430 vs. NCBI nr
Match: XP_016903672.1 (PREDICTED: uncharacterized protein LOC107992324, partial [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 7.5e-15
Identity = 44/68 (64.71%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 1  MDGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEKQQRKNEFI 60
          MDGDNV + VD+V DG+C VP+PTR+G TML QE+ SQLLWPRHLVIP DEK +      
Sbjct: 1  MDGDNVKVSVDMVTDGNCFVPVPTREGRTMLSQEVGSQLLWPRHLVIPLDEKMK---SVY 60

Query: 61 QADERAPS 69
          QAD R PS
Sbjct: 61 QADPRLPS 65

[Close]

BLAST of CsaV3_5G015430 vs. NCBI nr
Match: XP_011657178.1 (PREDICTED: uncharacterized protein LOC105435814 isoform X1 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-07
Identity = 27/53 (50.94%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 2  DGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEKQQ 55
          DG+N+ + VDVV+DG   +P PT++GVT L  EI S L+WPRHLV+ +++K++
Sbjct: 22 DGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKKE 74

[Close]

BLAST of CsaV3_5G015430 vs. NCBI nr
Match: XP_011657179.1 (PREDICTED: uncharacterized protein LOC105435814 isoform X2 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-07
Identity = 27/52 (51.92%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 2  DGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEKQ 54
          DG+N+ + VDVV+DG   +P PT++GVT L  EI S L+WPRHLV+ +++K+
Sbjct: 22 DGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDKE 73

[Close]

BLAST of CsaV3_5G015430 vs. NCBI nr
Match: KGN47213.1 (hypothetical protein Csa_6G211850 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 4.4e-07
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 2   DGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEK 53
           DG+N+ + VDVV+DG   +P PT++GVT L  EI S L+WPRHLV+ +++K
Sbjct: 129 DGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDK 179

[Close]

BLAST of CsaV3_5G015430 vs. TrEMBL
Match: tr|A0A0A0KMP7|A0A0A0KMP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G065650 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.1e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MDGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEKQQRKNEFI 60
          MDGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEKQQRKNEFI
Sbjct: 1  MDGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEKQQRKNEFI 60

Query: 61 QADERAPSPIQTR 74
          QADERAPSPIQTR
Sbjct: 61 QADERAPSPIQTR 73

[Close]

BLAST of CsaV3_5G015430 vs. TrEMBL
Match: tr|A0A1S4E627|A0A1S4E627_CUCME (uncharacterized protein LOC107992324 OS=Cucumis melo OX=3656 GN=LOC107992324 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.0e-15
Identity = 44/68 (64.71%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 1  MDGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEKQQRKNEFI 60
          MDGDNV + VD+V DG+C VP+PTR+G TML QE+ SQLLWPRHLVIP DEK +      
Sbjct: 1  MDGDNVKVSVDMVTDGNCFVPVPTREGRTMLSQEVGSQLLWPRHLVIPLDEKMK---SVY 60

Query: 61 QADERAPS 69
          QAD R PS
Sbjct: 61 QADPRLPS 65

[Close]

BLAST of CsaV3_5G015430 vs. TrEMBL
Match: tr|A0A0A0KCE4|A0A0A0KCE4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G211850 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-07
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 2   DGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISSQLLWPRHLVIPQDEK 53
           DG+N+ + VDVV+DG   +P PT++GVT L  EI S L+WPRHLV+ +++K
Sbjct: 129 DGENIKVSVDVVLDGKGVIPKPTKEGVTKLTHEIGSHLMWPRHLVLTRNDK 179

[Close]

BLAST of CsaV3_5G015430 vs. TrEMBL
Match: tr|A0A1S4DU79|A0A1S4DU79_CUCME (uncharacterized protein LOC103486165 OS=Cucumis melo OX=3656 GN=LOC103486165 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.9e-05
Identity = 22/37 (59.46%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 1   MDGDNVMILVDVVVDGDCSVPIPTRKGVTMLYQEISS 38
           +DGDN+ + VD+VVDG+C +P+PTR+G+TML QE+ S
Sbjct: 110 IDGDNMKVSVDMVVDGNCFIPVPTREGMTMLSQEVGS 146

The following BLAST results are available for this feature:

BLAST of CsaV3_5G015430 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49682.1	4.7e-33	100.00	hypothetical protein Csa_5G065650 [Cucumis sativus]	[more]
XP_016903672.1	7.5e-15	64.71	PREDICTED: uncharacterized protein LOC107992324, partial [Cucumis melo]	[more]
XP_011657178.1	3.4e-07	50.94	PREDICTED: uncharacterized protein LOC105435814 isoform X1 [Cucumis sativus]	[more]
XP_011657179.1	3.4e-07	51.92	PREDICTED: uncharacterized protein LOC105435814 isoform X2 [Cucumis sativus]	[more]
KGN47213.1	4.4e-07	52.94	hypothetical protein Csa_6G211850 [Cucumis sativus]	[more]

BLAST of CsaV3_5G015430 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G015430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G015430 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KMP7\|A0A0A0KMP7_CUCSA	3.1e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G065650 PE=4 SV=1	[more]
tr\|A0A1S4E627\|A0A1S4E627_CUCME	5.0e-15	64.71	uncharacterized protein LOC107992324 OS=Cucumis melo OX=3656 GN=LOC107992324 PE=...	[more]
tr\|A0A0A0KCE4\|A0A0A0KCE4_CUCSA	2.9e-07	52.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G211850 PE=4 SV=1	[more]
tr\|A0A1S4DU79\|A0A1S4DU79_CUCME	7.9e-05	59.46	uncharacterized protein LOC103486165 OS=Cucumis melo OX=3656 GN=LOC103486165 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G015430.1	CsaV3_5G015430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..73

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G015430	Silver-seed gourd	carcucB0204
CsaV3_5G015430	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G015430	Cucumber (Gy14) v1	cgycucB403
CsaV3_5G015430	Cucurbita maxima (Rimu)	cmacucB0879
CsaV3_5G015430	Cucurbita moschata (Rifu)	cmocucB0867
CsaV3_5G015430	Wild cucumber (PI 183967)	cpicucB286
CsaV3_5G015430	Bottle gourd (USVL1VR-Ls)	cuclsiB395
CsaV3_5G015430	Melon (DHL92) v3.5.1	cucmeB387
CsaV3_5G015430	Melon (DHL92) v3.6.1	cucmedB380
CsaV3_5G015430	Watermelon (Charleston Gray)	cucwcgB383
CsaV3_5G015430	Watermelon (Charleston Gray)	cucwcgB427
CsaV3_5G015430	Watermelon (97103) v1	cucwmB461
CsaV3_5G015430	Watermelon (97103) v2	cucwmbB413
CsaV3_5G015430	Wax gourd	cucwgoB518