CsaV3_5G015370 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G015370
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5 : 12662496 .. 12663102 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAACACTTCCTTGCTCGAAGATGATTTTAAAGGTTTAGCAACAAGGATCCAAGAAAGACGAGTTAAAGAAATTTGGGTTTGTGGAAGAAGAAGTGAAGAAATAGAGTTGGAGACAAAAGTGGAGGAGGAAGCTGCTGAGGAGTTTGAGAAAGAAAGCGACAGAGATACTTTGTCAGAGAAGTAATGCCCACTCACAAGAAAGGGAAGAAGACAAGTACATTCAAAGAGCTTTTGCAGACACAAGTAGAGGGAAGGTGAAAAGGACAATTGGGACCTCATCTCCATCAATACAATAAAGGATAAATCAAAATACCTAGAGATCAATTTAAGGACATAAAGGGGTTGAAGAAAGTGGGTGATGATGGTACAGACAAGAAGAGGAGGAAGCCTTAGGAGTGAAGAAAGGACAATCCTTTAAGGCTGAGGAATCCAATGACATTTTGTCGAAAACCCACCACCTTGACTTCTATGCAATCCTCCAAGGACAAATCGTTCAAACTCCTCACAATTCCAATTTTCCAATGCTCTCATCTCCCAACTCTCTTTCAAGCAAACCTTATTCACATACTCTGGACCTTAGCAAATTTGAAGATGTGTTGTGA

mRNA sequence

ATGAGAAACACTTCCTTGCTCGAAGATGATTTTAAAGGTTTAGCAACAAGGATCCAAGAAAGACGAGTTAAAGAAATTTGGGTTTGTGGAAGAAGAAGTGAAGAAATAGAGTTGGAGACAAAAGTGGAGGAGGAAGCTGCTGAGGAGTTTGAGAAAGAAAGCGACAGAGATACTTTGTCAGAGAAACAAGAAGAGGAGGAAGCCTTAGGAGTGAAGAAAGGACAATCCTTTAAGGCTGAGGAATCCAATGACATTTTGTCGAAAACCCACCACCTTGACTTCTATGCAATCCTCCAAGGACAAATCGTTCAAACTCCTCACAATTCCAATTTTCCAATGCTCTCATCTCCCAACTCTCTTTCAAGCAAACCTTATTCACATACTCTGGACCTTAGCAAATTTGAAGATGTGTTGTGA

Coding sequence (CDS)

ATGAGAAACACTTCCTTGCTCGAAGATGATTTTAAAGGTTTAGCAACAAGGATCCAAGAAAGACGAGTTAAAGAAATTTGGGTTTGTGGAAGAAGAAGTGAAGAAATAGAGTTGGAGACAAAAGTGGAGGAGGAAGCTGCTGAGGAGTTTGAGAAAGAAAGCGACAGAGATACTTTGTCAGAGAAACAAGAAGAGGAGGAAGCCTTAGGAGTGAAGAAAGGACAATCCTTTAAGGCTGAGGAATCCAATGACATTTTGTCGAAAACCCACCACCTTGACTTCTATGCAATCCTCCAAGGACAAATCGTTCAAACTCCTCACAATTCCAATTTTCCAATGCTCTCATCTCCCAACTCTCTTTCAAGCAAACCTTATTCACATACTCTGGACCTTAGCAAATTTGAAGATGTGTTGTGA

Protein sequence

MRNTSLLEDDFKGLATRIQERRVKEIWVCGRRSEEIELETKVEEEAAEEFEKESDRDTLSEKQEEEEALGVKKGQSFKAEESNDILSKTHHLDFYAILQGQIVQTPHNSNFPMLSSPNSLSSKPYSHTLDLSKFEDVL

Homology

[Close]

BLAST of CsaV3_5G015370 vs. NCBI nr
Match: KGN49676.1 (hypothetical protein Csa_5G057130 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 3.4e-53
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MRNTSLLEDDFKGLATRIQERRVKEIWVCGRRSEEIELETKVXXXXXXXXXXXXXXXXXX 60
           MRNTSLLEDDFKGLATRIQERRVKEIWVCGRRSEEIELETKVXXXXXXXXXXXXXXXXXX
Sbjct: 1   MRNTSLLEDDFKGLATRIQERRVKEIWVCGRRSEEIELETKVXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXALGVKKGQSFKAEESNDILSKTHHLDFYAILQGQIVQTPHNSNFPMLSSPNSL 120
           XXXXXXXALGVKKGQSFKAEESNDILSKTHHLDFYAILQGQIVQTPHNSNFPMLSSPNSL
Sbjct: 61  XXXXXXXALGVKKGQSFKAEESNDILSKTHHLDFYAILQGQIVQTPHNSNFPMLSSPNSL 120

Query: 121 SSKPYSHTLDLSKFEDVL 139
           SSKPYSHTLDLSKFEDVL
Sbjct: 121 SSKPYSHTLDLSKFEDVL 138

[Close]

BLAST of CsaV3_5G015370 vs. NCBI nr
Match: KGN54001.1 (hypothetical protein Csa_4G255430 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 2.9e-04
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 1  MRNTSLLEDDFKGLATRIQERRVKEIWVCGRRSEEIELETKV 43
          + NTSLLE DFKGLA R Q    KEIW  GRR++E+ELE KV
Sbjct: 33 VENTSLLEVDFKGLAKRTQGSLTKEIWDLGRRNQEVELEIKV 74

[Close]

BLAST of CsaV3_5G015370 vs. TrEMBL
Match: tr|A0A0A0KPM1|A0A0A0KPM1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G057130 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 2.3e-53
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MRNTSLLEDDFKGLATRIQERRVKEIWVCGRRSEEIELETKVXXXXXXXXXXXXXXXXXX 60
           MRNTSLLEDDFKGLATRIQERRVKEIWVCGRRSEEIELETKVXXXXXXXXXXXXXXXXXX
Sbjct: 1   MRNTSLLEDDFKGLATRIQERRVKEIWVCGRRSEEIELETKVXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXALGVKKGQSFKAEESNDILSKTHHLDFYAILQGQIVQTPHNSNFPMLSSPNSL 120
           XXXXXXXALGVKKGQSFKAEESNDILSKTHHLDFYAILQGQIVQTPHNSNFPMLSSPNSL
Sbjct: 61  XXXXXXXALGVKKGQSFKAEESNDILSKTHHLDFYAILQGQIVQTPHNSNFPMLSSPNSL 120

Query: 121 SSKPYSHTLDLSKFEDVL 139
           SSKPYSHTLDLSKFEDVL
Sbjct: 121 SSKPYSHTLDLSKFEDVL 138

[Close]

BLAST of CsaV3_5G015370 vs. TrEMBL
Match: tr|A0A0A0L1L9|A0A0A0L1L9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G255430 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.9e-04
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 1  MRNTSLLEDDFKGLATRIQERRVKEIWVCGRRSEEIELETKV 43
          + NTSLLE DFKGLA R Q    KEIW  GRR++E+ELE KV
Sbjct: 33 VENTSLLEVDFKGLAKRTQGSLTKEIWDLGRRNQEVELEIKV 74

The following BLAST results are available for this feature:

BLAST of CsaV3_5G015370 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49676.1	3.4e-53	100.00	hypothetical protein Csa_5G057130 [Cucumis sativus]	[more]
KGN54001.1	2.9e-04	64.29	hypothetical protein Csa_4G255430 [Cucumis sativus]	[more]

BLAST of CsaV3_5G015370 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G015370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G015370 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPM1\|A0A0A0KPM1_CUCSA	2.3e-53	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G057130 PE=4 SV=1	[more]
tr\|A0A0A0L1L9\|A0A0A0L1L9_CUCSA	1.9e-04	64.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G255430 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G015370.1	CsaV3_5G015370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 33..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..76

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G015370	Silver-seed gourd	carcucB0204
CsaV3_5G015370	Silver-seed gourd	carcucB0707
CsaV3_5G015370	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G015370	Cucumber (Gy14) v1	cgycucB403
CsaV3_5G015370	Cucurbita maxima (Rimu)	cmacucB0878
CsaV3_5G015370	Cucurbita maxima (Rimu)	cmacucB0879
CsaV3_5G015370	Cucurbita moschata (Rifu)	cmocucB0861
CsaV3_5G015370	Cucurbita moschata (Rifu)	cmocucB0867
CsaV3_5G015370	Cucurbita pepo (Zucchini)	cpecucB0533
CsaV3_5G015370	Wild cucumber (PI 183967)	cpicucB286
CsaV3_5G015370	Bottle gourd (USVL1VR-Ls)	cuclsiB395
CsaV3_5G015370	Melon (DHL92) v3.5.1	cucmeB387
CsaV3_5G015370	Melon (DHL92) v3.6.1	cucmedB380
CsaV3_5G015370	Watermelon (Charleston Gray)	cucwcgB383
CsaV3_5G015370	Watermelon (Charleston Gray)	cucwcgB427
CsaV3_5G015370	Watermelon (97103) v1	cucwmB412
CsaV3_5G015370	Watermelon (97103) v1	cucwmB461
CsaV3_5G015370	Watermelon (97103) v2	cucwmbB413
CsaV3_5G015370	Wax gourd	cucwgoB518