CsaV3_5G015340 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G015340
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 12602266 .. 12602529 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCACCGTCGAGAAAGACGCTGGCTATTTCTGGACAAGATCCACCGGAAAATTCGACGCCACGACCGAATTGCGTTATTGCCGCGCCCTCTCGTTAATGGGTAAGTTGCACGCCCTCGCGCAAGGATTCCGACTTGCGTGTTCTTGCGCGCCGCTTATCGCTGGCTGGAGGTTTGCGTGGTTACCGCCTGCCGCCGCCTATTTTACAGCCGTTGTGGTCGCCGGCGGTGAAAACGCTGGCAGGGCTGGGGTGTTCGGCGGCTGA

mRNA sequence

GTCACCGTCGAGAAAGACGCTGGCTATTTCTGGACAAGATCCACCGGAAAATTCGACGCCACGACCGAATTGCGTTATTGCCGCGCCCTCTCGTTAATGGGTAAGTTGCACGCCCTCGCGCAAGGATTCCGACTTGCGTGTTCTTGCGCGCCGCTTATCGCTGGCTGGAGGTTTGCGTGGTTACCGCCTGCCGCCGCCTATTTTACAGCCGTTGTGGTCGCCGGCGGTGAAAACGCTGGCAGGGCTGGGGTGTTCGGCGGCTGA

Coding sequence (CDS)

GTCACCGTCGAGAAAGACGCTGGCTATTTCTGGACAAGATCCACCGGAAAATTCGACGCCACGACCGAATTGCGTTATTGCCGCGCCCTCTCGTTAATGGGTAAGTTGCACGCCCTCGCGCAAGGATTCCGACTTGCGTGTTCTTGCGCGCCGCTTATCGCTGGCTGGAGGTTTGCGTGGTTACCGCCTGCCGCCGCCTATTTTACAGCCGTTGTGGTCGCCGGCGGTGAAAACGCTGGCAGGGCTGGGGTGTTCGGCGGCTGA

Protein sequence

VTVEKDAGYFWTRSTGKFDATTELRYCRALSLMGKLHALAQGFRLACSCAPLIAGWRFAWLPPAAAYFTAVVVAGGENAGRAGVFGG
Homology
[Close]
BLAST of CsaV3_5G015340 vs. NCBI nr
Match: KGN49671.1 (hypothetical protein Csa_5G056110 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 3.8e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  VTVEKDAGYFWTRSTGKFDATTELRYCRALSLMGKLHALAQGFRLACSCAPLIAGWRFAW 60
          VTVEKDAGYFWTRSTGKFDATTELRYCRALSLMGKLHALAQGFRLACSCAPLIAGWRFAW
Sbjct: 6  VTVEKDAGYFWTRSTGKFDATTELRYCRALSLMGKLHALAQGFRLACSCAPLIAGWRFAW 65

Query: 61 LPPAAAYFTAVVVAGGENAGRAGVFGG 88
          LPPAAAYFTAVVVAGGENAGRAGVFGG
Sbjct: 66 LPPAAAYFTAVVVAGGENAGRAGVFGG 92

[Close]
BLAST of CsaV3_5G015340 vs. TrEMBL
Match: tr|A0A0A0KPL6|A0A0A0KPL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G056110 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.5e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  VTVEKDAGYFWTRSTGKFDATTELRYCRALSLMGKLHALAQGFRLACSCAPLIAGWRFAW 60
          VTVEKDAGYFWTRSTGKFDATTELRYCRALSLMGKLHALAQGFRLACSCAPLIAGWRFAW
Sbjct: 6  VTVEKDAGYFWTRSTGKFDATTELRYCRALSLMGKLHALAQGFRLACSCAPLIAGWRFAW 65

Query: 61 LPPAAAYFTAVVVAGGENAGRAGVFGG 88
          LPPAAAYFTAVVVAGGENAGRAGVFGG
Sbjct: 66 LPPAAAYFTAVVVAGGENAGRAGVFGG 92

The following BLAST results are available for this feature:
BLAST of CsaV3_5G015340 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49671.13.8e-42100.00hypothetical protein Csa_5G056110 [Cucumis sativus][more]
BLAST of CsaV3_5G015340 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G015340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G015340 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KPL6|A0A0A0KPL6_CUCSA2.5e-42100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G056110 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G015340.1CsaV3_5G015340.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G015340CSPI05G01340Wild cucumber (PI 183967)cpicucB286
CsaV3_5G015340CsGy5G011550Cucumber (Gy14) v2cgybcucB232
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G015340Silver-seed gourdcarcucB0204
CsaV3_5G015340Silver-seed gourdcarcucB0707
CsaV3_5G015340Cucumber (Gy14) v1cgycucB403
CsaV3_5G015340Cucurbita maxima (Rimu)cmacucB0878
CsaV3_5G015340Cucurbita maxima (Rimu)cmacucB0879
CsaV3_5G015340Cucurbita moschata (Rifu)cmocucB0861
CsaV3_5G015340Cucurbita moschata (Rifu)cmocucB0867
CsaV3_5G015340Cucurbita pepo (Zucchini)cpecucB0533
CsaV3_5G015340Bottle gourd (USVL1VR-Ls)cuclsiB395
CsaV3_5G015340Melon (DHL92) v3.5.1cucmeB387
CsaV3_5G015340Melon (DHL92) v3.6.1cucmedB380
CsaV3_5G015340Watermelon (Charleston Gray)cucwcgB383
CsaV3_5G015340Watermelon (Charleston Gray)cucwcgB427
CsaV3_5G015340Watermelon (97103) v1cucwmB412
CsaV3_5G015340Watermelon (97103) v1cucwmB461
CsaV3_5G015340Watermelon (97103) v2cucwmbB413
CsaV3_5G015340Wax gourdcucwgoB518