CsaV3_5G015280 (gene) Cucumber (Chinese Long) v3

NameCsaV3_5G015280
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 12526815 .. 12527066 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGATTCCGCCACTGACCGAAGAACTAACGAGAATTCCTCGTATTTTTCCAATAAAAAATCTTCCCTAAACAAGATGTCTAATTCTACCACCAACCGAAGCACTAATGAGATCGAGGCCAATTTCTCGATGTTGAAGGGAGTTGTGAGTGATATAGTGGTCGAAACACAGTCCTCTAACAACACTCTGATGCTCGAAATTTGTGCCATTTTCTATAAAATATCAAAATTTAAGTCTCTCTTGAATTGA

mRNA sequence

ATGACGGATTCCGCCACTGACCGAAGAACTAACGAGAATTCCTCGTATTTTTCCAATAAAAAATCTTCCCTAAACAAGATGTCTAATTCTACCACCAACCGAAGCACTAATGAGATCGAGGCCAATTTCTCGATGTTGAAGGGAGTTGTGAGTGATATAGTGGTCGAAACACAGTCCTCTAACAACACTCTGATGCTCGAAATTTGTGCCATTTTCTATAAAATATCAAAATTTAAGTCTCTCTTGAATTGA

Coding sequence (CDS)

ATGACGGATTCCGCCACTGACCGAAGAACTAACGAGAATTCCTCGTATTTTTCCAATAAAAAATCTTCCCTAAACAAGATGTCTAATTCTACCACCAACCGAAGCACTAATGAGATCGAGGCCAATTTCTCGATGTTGAAGGGAGTTGTGAGTGATATAGTGGTCGAAACACAGTCCTCTAACAACACTCTGATGCTCGAAATTTGTGCCATTTTCTATAAAATATCAAAATTTAAGTCTCTCTTGAATTGA

Protein sequence

MTDSATDRRTNENSSYFSNKKSSLNKMSNSTTNRSTNEIEANFSMLKGVVSDIVVETQSSNNTLMLEICAIFYKISKFKSLLN
BLAST of CsaV3_5G015280 vs. NCBI nr
Match: KGN49665.1 (hypothetical protein Csa_5G054560 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 5.0e-23
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MTDSATDRRTNENSSYFSNKKSSLNKXXXXXXXXXXXXXXXXXXMLKGVVSDIVVETQSS 60
          MTDSATDRRTNENSSYFSNKKSSLNKXXXXXXXXXXXXXXXXXXMLKGVVSDIVVETQSS
Sbjct: 1  MTDSATDRRTNENSSYFSNKKSSLNKXXXXXXXXXXXXXXXXXXMLKGVVSDIVVETQSS 60

Query: 61 NNTLMLEICAIFYKISKFKSLLN 84
          NNTLMLEICAIFYKISKFKSLLN
Sbjct: 61 NNTLMLEICAIFYKISKFKSLLN 83

BLAST of CsaV3_5G015280 vs. TrEMBL
Match: tr|A0A0A0KIW4|A0A0A0KIW4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G054560 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.3e-23
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0

Query: 1  MTDSATDRRTNENSSYFSNKKSSLNKXXXXXXXXXXXXXXXXXXMLKGVVSDIVVETQSS 60
          MTDSATDRRTNENSSYFSNKKSSLNKXXXXXXXXXXXXXXXXXXMLKGVVSDIVVETQSS
Sbjct: 1  MTDSATDRRTNENSSYFSNKKSSLNKXXXXXXXXXXXXXXXXXXMLKGVVSDIVVETQSS 60

Query: 61 NNTLMLEICAIFYKISKFKSLLN 84
          NNTLMLEICAIFYKISKFKSLLN
Sbjct: 61 NNTLMLEICAIFYKISKFKSLLN 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49665.15.0e-23100.00hypothetical protein Csa_5G054560 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KIW4|A0A0A0KIW4_CUCSA3.3e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G054560 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G015280.1CsaV3_5G015280.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..36

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None