CsaV3_5G015240 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G015240
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 12497165 .. 12497387 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGGCAACACCAACAAAACCCTTGCTATTGTGATGGTTGCTATGATCATGGTTTGTTCATTGATGGAAAACCCAACGAACGCAACCTCTCTCGATTATGGTGCCATTGGTAAAGGAGACGCAAGATGTAAAGATGGTAAATGTGAAATATTAGGAGATCCAGCCAATAATTATACAAGAGGATGTGAGCCTGAAGAACACTGTAGATCTGGATCACCTG

mRNA sequence

ATGGCAGGCAACACCAACAAAACCCTTGCTATTGTGATGGTTGCTATGATCATGGTTTGTTCATTGATGGAAAACCCAACGAACGCAACCTCTCTCGATTATGGTGCCATTGGTAAAGGAGACGCAAGATGTAAAGATGGTAAATGTGAAATATTAGGAGATCCAGCCAATAATTATACAAGAGGATGTGAGCCTGAAGAACACTGTAGATCTGGATCACCTG

Coding sequence (CDS)

ATGGCAGGCAACACCAACAAAACCCTTGCTATTGTGATGGTTGCTATGATCATGGTTTGTTCATTGATGGAAAACCCAACGAACGCAACCTCTCTCGATTATGGTGCCATTGGTAAAGGAGACGCAAGATGTAAAGATGGTAAATGTGAAATATTAGGAGATCCAGCCAATAATTATACAAGAGGATGTGAGCCTGAAGAACACTGTAGATCTGGATCACCTG

Protein sequence

MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYTRGCEPEEHCRSGSPX
Homology
[Close]
BLAST of CsaV3_5G015240 vs. NCBI nr
Match: KGN49664.1 (hypothetical protein Csa_5G054060 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 3.0e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60
          MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT
Sbjct: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60

Query: 61 RGCEPEEHCRSGSP 75
          RGCEPEEHCRSGSP
Sbjct: 61 RGCEPEEHCRSGSP 74

[Close]
BLAST of CsaV3_5G015240 vs. NCBI nr
Match: KGN49064.1 (hypothetical protein Csa_6G511800 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 2.6e-31
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60
          MAGNTNKTL I+M+AMIM CSL+ENPTNATSL YG IGKGDARCKDGKCEILGDPANNYT
Sbjct: 1  MAGNTNKTLVILMIAMIMACSLIENPTNATSLGYGVIGKGDARCKDGKCEILGDPANNYT 60

Query: 61 RGCEPEEHCRSGS 74
          RGCEPEEHCRSGS
Sbjct: 61 RGCEPEEHCRSGS 73

[Close]
BLAST of CsaV3_5G015240 vs. NCBI nr
Match: PIA35096.1 (hypothetical protein AQUCO_03600037v1 [Aquilegia coerulea])

HSP 1 Score: 62.0 bits (149), Expect = 9.9e-07
Identity = 30/65 (46.15%), Postives = 38/65 (58.46%), Query Frame = 0 

Query: 7  KTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYTRGCEPE 66
          K LA  + A+ +    +E    +T + YG +GKGD  CKDGKC     PAN YTRGC  E
Sbjct: 5  KVLAFTIAALFICSVFIETTKASTYIGYGGLGKGDIPCKDGKCH-RETPANEYTRGCSKE 64

Query: 67 EHCRS 72
          + CRS
Sbjct: 65 QRCRS 68

[Close]
BLAST of CsaV3_5G015240 vs. NCBI nr
Match: PPR91755.1 (hypothetical protein GOBAR_AA28929 [Gossypium barbadense])

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-06
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 0 

Query: 3  GNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDAR--CKDGKCEILGDPANNYT 62
          G   K + + + AM++   LMEN  NA +LDYGAI +GD +  C+ G    + +P N Y 
Sbjct: 2  GVEKKMMVVWICAMVVSSMLMENSANAENLDYGAIARGDMQKPCRPGTLNCVPEPTNKYD 61

Query: 63 RGCEPEEHCRSG 73
          RGC   E CR+G
Sbjct: 62 RGCSRLEMCRNG 73

[Close]
BLAST of CsaV3_5G015240 vs. NCBI nr
Match: KJB44778.1 (hypothetical protein B456_007G272100 [Gossypium raimondii] >KJB44779.1 hypothetical protein B456_007G272200 [Gossypium raimondii] >PPD76609.1 hypothetical protein GOBAR_DD26467 [Gossypium barbadense])

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 0 

Query: 3  GNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGD--ARCKDGKCEILGDPANNYT 62
          G   K + + + AM++   LMEN  NA +L+YGAI +GD    C+ G    + +PAN Y 
Sbjct: 2  GVEKKMMVVWICAMVVSSMLMENGANAENLNYGAIERGDMPKPCRPGTLNCVPEPANKYD 61

Query: 63 RGCEPEEHCRSG 73
          RGC   E CR+G
Sbjct: 62 RGCSRLEKCRNG 73

[Close]
BLAST of CsaV3_5G015240 vs. TrEMBL
Match: tr|A0A0A0KLD0|A0A0A0KLD0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G054060 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60
          MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT
Sbjct: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60

Query: 61 RGCEPEEHCRSGSP 75
          RGCEPEEHCRSGSP
Sbjct: 61 RGCEPEEHCRSGSP 74

[Close]
BLAST of CsaV3_5G015240 vs. TrEMBL
Match: tr|A0A0A0KJT5|A0A0A0KJT5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511800 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.7e-31
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60
          MAGNTNKTL I+M+AMIM CSL+ENPTNATSL YG IGKGDARCKDGKCEILGDPANNYT
Sbjct: 1  MAGNTNKTLVILMIAMIMACSLIENPTNATSLGYGVIGKGDARCKDGKCEILGDPANNYT 60

Query: 61 RGCEPEEHCRSGS 74
          RGCEPEEHCRSGS
Sbjct: 61 RGCEPEEHCRSGS 73

[Close]
BLAST of CsaV3_5G015240 vs. TrEMBL
Match: tr|A0A2G5CUZ7|A0A2G5CUZ7_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03600037v1 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.6e-07
Identity = 30/65 (46.15%), Postives = 38/65 (58.46%), Query Frame = 0 

Query: 7  KTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYTRGCEPE 66
          K LA  + A+ +    +E    +T + YG +GKGD  CKDGKC     PAN YTRGC  E
Sbjct: 5  KVLAFTIAALFICSVFIETTKASTYIGYGGLGKGDIPCKDGKCH-RETPANEYTRGCSKE 64

Query: 67 EHCRS 72
          + CRS
Sbjct: 65 QRCRS 68

[Close]
BLAST of CsaV3_5G015240 vs. TrEMBL
Match: tr|A0A2P5WL13|A0A2P5WL13_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA28929 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-06
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 0 

Query: 3  GNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDAR--CKDGKCEILGDPANNYT 62
          G   K + + + AM++   LMEN  NA +LDYGAI +GD +  C+ G    + +P N Y 
Sbjct: 2  GVEKKMMVVWICAMVVSSMLMENSANAENLDYGAIARGDMQKPCRPGTLNCVPEPTNKYD 61

Query: 63 RGCEPEEHCRSG 73
          RGC   E CR+G
Sbjct: 62 RGCSRLEMCRNG 73

[Close]
BLAST of CsaV3_5G015240 vs. TrEMBL
Match: tr|A0A0D2SKN2|A0A0D2SKN2_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G272100 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.3e-06
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 0 

Query: 3  GNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGD--ARCKDGKCEILGDPANNYT 62
          G   K + + + AM++   LMEN  NA +L+YGAI +GD    C+ G    + +PAN Y 
Sbjct: 2  GVEKKMMVVWICAMVVSSMLMENGANAENLNYGAIERGDMPKPCRPGTLNCVPEPANKYD 61

Query: 63 RGCEPEEHCRSG 73
          RGC   E CR+G
Sbjct: 62 RGCSRLEKCRNG 73

The following BLAST results are available for this feature:
BLAST of CsaV3_5G015240 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49664.13.0e-35100.00hypothetical protein Csa_5G054060 [Cucumis sativus][more]
KGN49064.12.6e-3190.41hypothetical protein Csa_6G511800 [Cucumis sativus][more]
PIA35096.19.9e-0746.15hypothetical protein AQUCO_03600037v1 [Aquilegia coerulea][more]
PPR91755.12.2e-0641.67hypothetical protein GOBAR_AA28929 [Gossypium barbadense][more]
KJB44778.11.1e-0541.67hypothetical protein B456_007G272100 [Gossypium raimondii] >KJB44779.1 hypotheti... [more]
BLAST of CsaV3_5G015240 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G015240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G015240 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KLD0|A0A0A0KLD0_CUCSA2.0e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G054060 PE=4 SV=1[more]
tr|A0A0A0KJT5|A0A0A0KJT5_CUCSA1.7e-3190.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511800 PE=4 SV=1[more]
tr|A0A2G5CUZ7|A0A2G5CUZ7_AQUCA6.6e-0746.15Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03600037v1 PE=4... [more]
tr|A0A2P5WL13|A0A2P5WL13_GOSBA1.5e-0641.67Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA28929 PE=4 SV... [more]
tr|A0A0D2SKN2|A0A0D2SKN2_GOSRA7.3e-0641.67Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G272100 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008801RALF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G015240.1CsaV3_5G015240.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008801Rapid ALkalinization FactorPFAMPF05498RALFcoord: 32..70
e-value: 2.7E-4
score: 21.7
NoneNo IPR availablePANTHERPTHR34270FAMILY NOT NAMEDcoord: 6..72

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G015240Watermelon (97103) v2cucwmbB413
CsaV3_5G015240Wax gourdcucwgoB518
CsaV3_5G015240Silver-seed gourdcarcucB0204
CsaV3_5G015240Silver-seed gourdcarcucB0707
CsaV3_5G015240Cucumber (Gy14) v2cgybcucB232
CsaV3_5G015240Cucurbita maxima (Rimu)cmacucB0878
CsaV3_5G015240Cucurbita maxima (Rimu)cmacucB0879
CsaV3_5G015240Cucurbita moschata (Rifu)cmocucB0861
CsaV3_5G015240Cucurbita moschata (Rifu)cmocucB0867
CsaV3_5G015240Cucurbita pepo (Zucchini)cpecucB0533
CsaV3_5G015240Wild cucumber (PI 183967)cpicucB286
CsaV3_5G015240Bottle gourd (USVL1VR-Ls)cuclsiB395
CsaV3_5G015240Melon (DHL92) v3.5.1cucmeB387
CsaV3_5G015240Melon (DHL92) v3.6.1cucmedB380
CsaV3_5G015240Watermelon (Charleston Gray)cucwcgB427
CsaV3_5G015240Watermelon (97103) v1cucwmB412