CsaV3_5G015230 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G015230
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5 : 12487645 .. 12488211 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGGAAACCCATTCCCTCGTTCCTTTCACCCTTCATTCAAAATAAAATTTGAAGAATAGAAAGGTCAATACCAAAAAAAGGTTAAAATGGCAGGCAACACCAACAAAACCCTTGCTATTGTGATGGTTGCTATGATCATGGTTTGTTCATTGATGGAAAACCCAACGAACGCAACCTCTCTCGATTATGGTGCCATTGGTAAAGGAGACGCAAGATGTAAAGATGGTAAATGTGAAATATTAGGAGATCCAGCCAATAATTATACAAGAGGATGTGAGCCTGAAGAACACTGTAGATCTGGATCACCTGGTCAATGATTCACAACATTTGCCTTCTACATCTCTATTCCACCATTCTATATCCTATCTCTCTTCCAATTATGACCATGGTGTAAAACAAGTGCATGTCATTCATTCATATATGGTATTGACCGGACATTTCTTTGATATTTAATTTATTAATTCAATGGTTTTATTAATATGTTGGATTTGTTATATCTTCCATTTCTTTGCGTATGTTTCTTAATATTCTTTTCAATTTTCTTCCTCTCGATTAGGTAGATAGT

mRNA sequence

ATGGCAGGCAACACCAACAAAACCCTTGCTATTGTGATGGTTGCTATGATCATGGTTTGTTCATTGATGGAAAACCCAACGAACGCAACCTCTCTCGATTATGGTGCCATTGGTAAAGGAGACGCAAGATGTAAAGATGGTAAATGTGAAATATTAGGAGATCCAGCCAATAATTATACAAGAGGATGTGAGCCTGAAGAACACTGTAGATCTGGATCACCTGGTCAATGA

Coding sequence (CDS)

ATGGCAGGCAACACCAACAAAACCCTTGCTATTGTGATGGTTGCTATGATCATGGTTTGTTCATTGATGGAAAACCCAACGAACGCAACCTCTCTCGATTATGGTGCCATTGGTAAAGGAGACGCAAGATGTAAAGATGGTAAATGTGAAATATTAGGAGATCCAGCCAATAATTATACAAGAGGATGTGAGCCTGAAGAACACTGTAGATCTGGATCACCTGGTCAATGA

Protein sequence

MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYTRGCEPEEHCRSGSPGQ

Homology

[Close]

BLAST of CsaV3_5G015230 vs. NCBI nr
Match: KGN49664.1 (hypothetical protein Csa_5G054060 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60
          MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT
Sbjct: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60

Query: 61 RGCEPEEHCRSGSPGQ 77
          RGCEPEEHCRSGSPGQ
Sbjct: 61 RGCEPEEHCRSGSPGQ 76

[Close]

BLAST of CsaV3_5G015230 vs. NCBI nr
Match: KGN49064.1 (hypothetical protein Csa_6G511800 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 5.4e-32
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60
          MAGNTNKTL I+M+AMIM CSL+ENPTNATSL YG IGKGDARCKDGKCEILGDPANNYT
Sbjct: 1  MAGNTNKTLVILMIAMIMACSLIENPTNATSLGYGVIGKGDARCKDGKCEILGDPANNYT 60

Query: 61 RGCEPEEHCRSGSPG 76
          RGCEPEEHCRSGS G
Sbjct: 61 RGCEPEEHCRSGSSG 75

[Close]

BLAST of CsaV3_5G015230 vs. NCBI nr
Match: PIA35096.1 (hypothetical protein AQUCO_03600037v1 [Aquilegia coerulea])

HSP 1 Score: 62.4 bits (150), Expect = 7.8e-07
Identity = 30/65 (46.15%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 7  KTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYTRGCEPE 66
          K LA  + A+ +    +E    +T + YG +GKGD  CKDGKC     PAN YTRGC  E
Sbjct: 5  KVLAFTIAALFICSVFIETTKASTYIGYGGLGKGDIPCKDGKCH-RETPANEYTRGCSKE 64

Query: 67 EHCRS 72
          + CRS
Sbjct: 65 QRCRS 68

[Close]

BLAST of CsaV3_5G015230 vs. NCBI nr
Match: PPR91755.1 (hypothetical protein GOBAR_AA28929 [Gossypium barbadense])

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-06
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 3  GNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDAR--CKDGKCEILGDPANNYT 62
          G   K + + + AM++   LMEN  NA +LDYGAI +GD +  C+ G    + +P N Y 
Sbjct: 2  GVEKKMMVVWICAMVVSSMLMENSANAENLDYGAIARGDMQKPCRPGTLNCVPEPTNKYD 61

Query: 63 RGCEPEEHCRSG 73
          RGC   E CR+G
Sbjct: 62 RGCSRLEMCRNG 73

[Close]

BLAST of CsaV3_5G015230 vs. NCBI nr
Match: KJB44778.1 (hypothetical protein B456_007G272100 [Gossypium raimondii] >KJB44779.1 hypothetical protein B456_007G272200 [Gossypium raimondii] >PPD76609.1 hypothetical protein GOBAR_DD26467 [Gossypium barbadense])

HSP 1 Score: 58.9 bits (141), Expect = 8.6e-06
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 3  GNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGD--ARCKDGKCEILGDPANNYT 62
          G   K + + + AM++   LMEN  NA +L+YGAI +GD    C+ G    + +PAN Y 
Sbjct: 2  GVEKKMMVVWICAMVVSSMLMENGANAENLNYGAIERGDMPKPCRPGTLNCVPEPANKYD 61

Query: 63 RGCEPEEHCRSG 73
          RGC   E CR+G
Sbjct: 62 RGCSRLEKCRNG 73

[Close]

BLAST of CsaV3_5G015230 vs. TrEMBL
Match: tr|A0A0A0KLD0|A0A0A0KLD0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G054060 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 8.2e-37
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60
          MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT
Sbjct: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60

Query: 61 RGCEPEEHCRSGSPGQ 77
          RGCEPEEHCRSGSPGQ
Sbjct: 61 RGCEPEEHCRSGSPGQ 76

[Close]

BLAST of CsaV3_5G015230 vs. TrEMBL
Match: tr|A0A0A0KJT5|A0A0A0KJT5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511800 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.6e-32
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MAGNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYT 60
          MAGNTNKTL I+M+AMIM CSL+ENPTNATSL YG IGKGDARCKDGKCEILGDPANNYT
Sbjct: 1  MAGNTNKTLVILMIAMIMACSLIENPTNATSLGYGVIGKGDARCKDGKCEILGDPANNYT 60

Query: 61 RGCEPEEHCRSGSPG 76
          RGCEPEEHCRSGS G
Sbjct: 61 RGCEPEEHCRSGSSG 75

[Close]

BLAST of CsaV3_5G015230 vs. TrEMBL
Match: tr|A0A2G5CUZ7|A0A2G5CUZ7_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03600037v1 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.2e-07
Identity = 30/65 (46.15%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 7  KTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDARCKDGKCEILGDPANNYTRGCEPE 66
          K LA  + A+ +    +E    +T + YG +GKGD  CKDGKC     PAN YTRGC  E
Sbjct: 5  KVLAFTIAALFICSVFIETTKASTYIGYGGLGKGDIPCKDGKCH-RETPANEYTRGCSKE 64

Query: 67 EHCRS 72
          + CRS
Sbjct: 65 QRCRS 68

[Close]

BLAST of CsaV3_5G015230 vs. TrEMBL
Match: tr|A0A2P5WL13|A0A2P5WL13_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA28929 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 3  GNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGDAR--CKDGKCEILGDPANNYT 62
          G   K + + + AM++   LMEN  NA +LDYGAI +GD +  C+ G    + +P N Y 
Sbjct: 2  GVEKKMMVVWICAMVVSSMLMENSANAENLDYGAIARGDMQKPCRPGTLNCVPEPTNKYD 61

Query: 63 RGCEPEEHCRSG 73
          RGC   E CR+G
Sbjct: 62 RGCSRLEMCRNG 73

[Close]

BLAST of CsaV3_5G015230 vs. TrEMBL
Match: tr|A0A0D2SKN2|A0A0D2SKN2_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G272100 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.7e-06
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 3  GNTNKTLAIVMVAMIMVCSLMENPTNATSLDYGAIGKGD--ARCKDGKCEILGDPANNYT 62
          G   K + + + AM++   LMEN  NA +L+YGAI +GD    C+ G    + +PAN Y 
Sbjct: 2  GVEKKMMVVWICAMVVSSMLMENGANAENLNYGAIERGDMPKPCRPGTLNCVPEPANKYD 61

Query: 63 RGCEPEEHCRSG 73
          RGC   E CR+G
Sbjct: 62 RGCSRLEKCRNG 73

The following BLAST results are available for this feature:

BLAST of CsaV3_5G015230 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49664.1	1.2e-36	100.00	hypothetical protein Csa_5G054060 [Cucumis sativus]	[more]
KGN49064.1	5.4e-32	89.33	hypothetical protein Csa_6G511800 [Cucumis sativus]	[more]
PIA35096.1	7.8e-07	46.15	hypothetical protein AQUCO_03600037v1 [Aquilegia coerulea]	[more]
PPR91755.1	1.7e-06	41.67	hypothetical protein GOBAR_AA28929 [Gossypium barbadense]	[more]
KJB44778.1	8.6e-06	41.67	hypothetical protein B456_007G272100 [Gossypium raimondii] >KJB44779.1 hypotheti...	[more]

BLAST of CsaV3_5G015230 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G015230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G015230 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KLD0\|A0A0A0KLD0_CUCSA	8.2e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G054060 PE=4 SV=1	[more]
tr\|A0A0A0KJT5\|A0A0A0KJT5_CUCSA	3.6e-32	89.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511800 PE=4 SV=1	[more]
tr\|A0A2G5CUZ7\|A0A2G5CUZ7_AQUCA	5.2e-07	46.15	Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_03600037v1 PE=4...	[more]
tr\|A0A2P5WL13\|A0A2P5WL13_GOSBA	1.2e-06	41.67	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA28929 PE=4 SV...	[more]
tr\|A0A0D2SKN2\|A0A0D2SKN2_GOSRA	5.7e-06	41.67	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G272100 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008801	RALF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G015230.1	CsaV3_5G015230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 32..70 e-value: 2.8E-4 score: 21.6
None	No IPR available	PANTHER	PTHR34270	FAMILY NOT NAMED	coord: 6..72

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G015230	Silver-seed gourd	carcucB0204
CsaV3_5G015230	Silver-seed gourd	carcucB0707
CsaV3_5G015230	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G015230	Cucurbita maxima (Rimu)	cmacucB0878
CsaV3_5G015230	Cucurbita maxima (Rimu)	cmacucB0879
CsaV3_5G015230	Cucurbita moschata (Rifu)	cmocucB0861
CsaV3_5G015230	Cucurbita moschata (Rifu)	cmocucB0867
CsaV3_5G015230	Cucurbita pepo (Zucchini)	cpecucB0533
CsaV3_5G015230	Wild cucumber (PI 183967)	cpicucB286
CsaV3_5G015230	Bottle gourd (USVL1VR-Ls)	cuclsiB395
CsaV3_5G015230	Melon (DHL92) v3.5.1	cucmeB387
CsaV3_5G015230	Melon (DHL92) v3.6.1	cucmedB380
CsaV3_5G015230	Watermelon (Charleston Gray)	cucwcgB427
CsaV3_5G015230	Watermelon (97103) v1	cucwmB412
CsaV3_5G015230	Watermelon (97103) v2	cucwmbB413
CsaV3_5G015230	Wax gourd	cucwgoB518