CsaV3_5G015090 (gene) Cucumber (Chinese Long) v3

NameCsaV3_5G015090
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTransposase
Locationchr5 : 12289424 .. 12289627 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAGTCATGGATGACCCAAAATAGGATGTCAAGAGAATATGATTTAGGAGTCGAAAGGTTCATTAAATTTGGGTTGAGTCATGCCAAAGGTCTTAATTCAATTAGATGTCCATGTTTGAATTGCGGCAATCGTTTACTTAAGGATGTCTCAACAGTTCGGTATCATCTGTATGCCAATGGAATTGATAAGAGTTACAAG

mRNA sequence

ATGGACAAGTCATGGATGACCCAAAATAGGATGTCAAGAGAATATGATTTAGGAGTCGAAAGGTTCATTAAATTTGGGTTGAGTCATGCCAAAGGTCTTAATTCAATTAGATGTCCATGTTTGAATTGCGGCAATCGTTTACTTAAGGATGTCTCAACAGTTCGGTATCATCTGTATGCCAATGGAATTGATAAGAGTTACAAG

Coding sequence (CDS)

ATGGACAAGTCATGGATGACCCAAAATAGGATGTCAAGAGAATATGATTTAGGAGTCGAAAGGTTCATTAAATTTGGGTTGAGTCATGCCAAAGGTCTTAATTCAATTAGATGTCCATGTTTGAATTGCGGCAATCGTTTACTTAAGGATGTCTCAACAGTTCGGTATCATCTGTATGCCAATGGAATTGATAAGAGTTACAAG

Protein sequence

MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYANGIDKSYK
BLAST of CsaV3_5G015090 vs. NCBI nr
Match: XP_022159378.1 (uncharacterized protein LOC111025795 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 9.3e-20
Identity = 44/67 (65.67%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 1  MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60
          M KSWM +NR+S+EY++ V+ FI+FGLSHA G NSIRCPCL CGN + KD++ VR HLY+
Sbjct: 1  MXKSWMKKNRLSKEYEVXVQTFIEFGLSHANGSNSIRCPCLKCGNLICKDIAIVRDHLYS 60

Query: 61 NGIDKSY 68
          NGID+SY
Sbjct: 61 NGIDQSY 67

BLAST of CsaV3_5G015090 vs. NCBI nr
Match: XP_022148697.1 (uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148698.1 uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148699.1 uncharacterized protein LOC111017298 [Momordica charantia])

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-18
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 1   MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60
           MDKSWM ++R+S+EYDLGVE FIKFG  HAKG   IRCPCL CGNR+ +    +R HLY 
Sbjct: 103 MDKSWMGKSRLSKEYDLGVEMFIKFGERHAKGSTFIRCPCLKCGNRVPRSSRDIRDHLYI 162

Query: 61  NGIDKSYK 69
           +GID+SYK
Sbjct: 163 HGIDQSYK 170

BLAST of CsaV3_5G015090 vs. NCBI nr
Match: XP_015387888.1 (uncharacterized protein LOC107177880 [Citrus sinensis])

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 1  MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60
          MDKSWM+ +R S++Y++GVERFI F + HA   N I CPC+ CGN   + V  +R HLY 
Sbjct: 1  MDKSWMSMDRRSKDYEIGVERFIDFAMVHATNSNHILCPCMKCGNVKHQTVDEIRDHLYL 60

Query: 61 NGIDKSY 68
          NGID+SY
Sbjct: 61 NGIDQSY 67

BLAST of CsaV3_5G015090 vs. NCBI nr
Match: XP_015387932.1 (uncharacterized protein LOC107177904 [Citrus sinensis])

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 1  MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60
          MDKSWM+ +R S++Y++GVERFI F + HA   N I CPC+ CGN   + V  +R HLY 
Sbjct: 1  MDKSWMSMDRRSKDYEIGVERFIDFAMVHATNSNHILCPCMKCGNVKHQTVDEIRDHLYL 60

Query: 61 NGIDKSY 68
          NGID+SY
Sbjct: 61 NGIDQSY 67

BLAST of CsaV3_5G015090 vs. NCBI nr
Match: XP_024046414.1 (uncharacterized protein LOC112100810 [Citrus clementina])

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 1  MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60
          MDKSWM+ +R S++Y++GVERFI F + HA   N I CPC+ CGN   + V  +R HLY 
Sbjct: 1  MDKSWMSMDRRSKDYEIGVERFIDFAMVHATNSNHILCPCMKCGNVKHQTVDEIRDHLYL 60

Query: 61 NGIDKSY 68
          NGID+SY
Sbjct: 61 NGIDQSY 67

BLAST of CsaV3_5G015090 vs. TrEMBL
Match: tr|M5WIW7|M5WIW7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015067mg PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-14
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 1  MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60
          MDKSWM  +R SREY++GVE F+KF + +++ +N I CPC+ CGN L   ++ +R H+Y 
Sbjct: 1  MDKSWMYVDRRSREYEVGVEGFLKFAIENSRNVNLIHCPCIKCGNILQYGIAVIRDHMYI 60

Query: 61 NGIDKSYK 69
          NG+D SY+
Sbjct: 61 NGVDTSYQ 68

BLAST of CsaV3_5G015090 vs. TrEMBL
Match: tr|A5C8Z9|A5C8Z9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_020028 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.9e-14
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 1  MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60
          MD+SWM+++RMSREY+ GVE FI F L H    + IRCPC+ CGN +    + +R H++ 
Sbjct: 1  MDRSWMSKDRMSREYEEGVEYFINFALEHCPNQSGIRCPCMRCGNLIHHTPNKIREHMFF 60

Query: 61 NGIDKSY 68
          NGID+SY
Sbjct: 61 NGIDQSY 67

BLAST of CsaV3_5G015090 vs. TrEMBL
Match: tr|A5B592|A5B592_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019902 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.0e-14
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 1  MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60
          MD+SWM+++RMSREY+ GVE FI F L H      IRCPC+ CGN +    + +R H++ 
Sbjct: 1  MDRSWMSKDRMSREYEEGVEYFINFALEHCPNQRGIRCPCMRCGNLIHHTPNKIREHMFF 60

Query: 61 NGIDKSY 68
          NGID+SY
Sbjct: 61 NGIDQSY 67

BLAST of CsaV3_5G015090 vs. TrEMBL
Match: tr|A5AM06|A5AM06_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042965 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.0e-14
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 1  MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60
          MD+SWM+++RMSREY+ GVE FI F L H      IRCPC+ CGN +    + +R H++ 
Sbjct: 1  MDRSWMSKDRMSREYEEGVEYFINFALEHCPNQRGIRCPCMRCGNLIHHTPNKIREHMFF 60

Query: 61 NGIDKSY 68
          NGID+SY
Sbjct: 61 NGIDQSY 67

BLAST of CsaV3_5G015090 vs. TrEMBL
Match: tr|A0A251SGZ8|A0A251SGZ8_HELAN (Putative transposon, En/Spm-like, Transposase-associated domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr14g0441971 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.5e-13
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 0

Query: 1  MDKSWMTQNRMSREYDLGVERFIKFGLSHAKGLNSIRCPCLNCGNRLLKDVSTVRYHLYA 60
          MDKSW++ +R+S  YD GVE F++F  S+   L+ I CPC+NC N   + +  VRYHL+A
Sbjct: 3  MDKSWISSDRLSNAYDKGVEEFLEFAQSNNPQLDVIPCPCVNCINLCHRSIDDVRYHLFA 62

Query: 61 NGIDKSYK 69
          +G D+SYK
Sbjct: 63 HGFDESYK 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022159378.19.3e-2065.67uncharacterized protein LOC111025795 [Momordica charantia][more]
XP_022148697.12.3e-1864.71uncharacterized protein LOC111017298 [Momordica charantia] >XP_022148698.1 uncha... [more]
XP_015387888.11.2e-1455.22uncharacterized protein LOC107177880 [Citrus sinensis][more]
XP_015387932.11.2e-1455.22uncharacterized protein LOC107177904 [Citrus sinensis][more]
XP_024046414.11.2e-1455.22uncharacterized protein LOC112100810 [Citrus clementina][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|M5WIW7|M5WIW7_PRUPE1.7e-1450.00Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015067m... [more]
tr|A5C8Z9|A5C8Z9_VITVI3.9e-1452.24Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_020028 PE=4 SV=1[more]
tr|A5B592|A5B592_VITVI5.0e-1452.24Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019902 PE=4 SV=1[more]
tr|A5AM06|A5AM06_VITVI5.0e-1452.24Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_042965 PE=4 SV=1[more]
tr|A0A251SGZ8|A0A251SGZ8_HELAN9.5e-1350.00Putative transposon, En/Spm-like, Transposase-associated domain protein OS=Helia... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029480Transpos_assoc
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G015090.1CsaV3_5G015090.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029480Transposase-associated domainPFAMPF13963Transpos_assoccoord: 3..68
e-value: 4.3E-17
score: 62.2
NoneNo IPR availablePANTHERPTHR10775UNCHARACTERIZEDcoord: 6..67
NoneNo IPR availablePANTHERPTHR10775:SF115SUBFAMILY NOT NAMEDcoord: 6..67

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None