CsaV3_5G015010 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G015010
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr5 : 12171460 .. 12172857 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCAATTTTATGTTGCAATCTTCATTTTTATTACAAAATAACAATTGGTATTAGAGCTCTCCTCTTAAGGGATTTATGAGTGTGTGTGTGAAGTTGTATCATGGACGCCGAAGCAAGTTCAAGTTCTCTTCAATTTCTCCATCGATATTTGATGGAGACAACTACCAATTAAGTTTGGGCAGTTCGTATGGAGGCATATAATATGAAAGCTTTGGATATTTGGGAAGCAGTGGAAGAGGATTATGAAATTTCTGCTCTTCCAGACAATCCTACCATGGCGCAAATCAAAGCACAAAAGGAGAAGAAGAGAAAGAAATCCAAGGCAAAGGTATGTTTGTTCGCTGCAGTCTCATCTACTATTTTCACTCAAATTATGACTTTGAGATCAGCATATGAGATATGAAATTATCTCAAGTCAGAGTATGAGGGAAATGAAAGAATCAAAAGAATGTGTGTGCTAAACTTGATTCGAGAATTCGAGTTGCAGAAGATGATGGAAACATAATCAATTAAAGAGTATTCTGTTAGGTTATTGAACATTGCAAACAAAATCAGATTTCTTGGTTCTAAGCTCAAGGACTCAAGAATTTTTGAAAAAATTCTTTTATCAGTGCCTGAAAAATTTGAGGCATCTATTTCTGCCTTAGAAAGTACCAAAGATTTGACTCAAATCACTCTTGAAAAGATACTCAATGCTTTGCAAGCGCAGGAACAAAGAAGAACCATGAAGCAAGAAGGTGTTGTTGAAGGAGCCTTGCCAGCCAAGCATCATGAGAACGTTAGGAACAATAAGGAGTTTTTCAAGAAGAATCAAATTTCTACAAGAGAATCTTTAGCTTACAATAAAGTAGGAATCAATAAGGGATCCTACCCTCCATGTCCACATTGCAATATATAGGGTCATTCTCCTTTTAAATGTTAGAGGAGACCAGACACCAAGTGCACCAAATGTAACCAAATGGGGCAATTTGCAAGAGCAAGAATCAACAACAAGGTGTAGAGGCCAAAATTGTTAATCAGGAGGAGGAGGAGGATCAATTGTTTGTGGCTACATGCTTGGTGGGTGGTGAATCAAATGAAAACTAGCTGATGACAGTGGTTGTACCAACCATATGACTCATGACAATGAGTTGTTTAGAGATTTGAAGCCAACAAATATCACCAAAGTCAGAATTGGAAACGGAGACTACATCTCAGTTAAAGAAAATGGGATTGTTGCGATTACAAATTATACAGGTCCAAAACATATACAAGATGTTTTTTTTGTCTCTAACATTGATCAAAATCTGTTGAGTGTGGGTCAACTTATTGAAAAAGACTTTAAAGTTACTTTTGAAGATGAATATTGCTTGATTAAGGATGCAGAAAATCAAGATATTTTCAAAGTAAAACTGAAA

mRNA sequence

ATGGAGGCATATAATATGAAAGCTTTGGATATTTGGGAAGCAGTGGAAGAGGATTATGAAATTTCTGCTCTTCCAGACAATCCTACCATGGCGCAAATCAAAGCACAAAAGGAGAAGAAGAGAAAGAAATCCAAGGCAAAGGAACAAAGAAGAACCATGAAGCAAGAAGGTGTTGTTGAAGGAGCCTTGCCAGCCAAGCATCATGAGAACGTTAGGAACAATAAGGAGTTTTTCAAGAAGAATCAAATTTCTACAAGAGAATCTTTAGCTTACAATAAAGTAGGAATCAATAAGGGATCCTACCCTCCATGTCCACATTGCAATATATAG

Coding sequence (CDS)

ATGGAGGCATATAATATGAAAGCTTTGGATATTTGGGAAGCAGTGGAAGAGGATTATGAAATTTCTGCTCTTCCAGACAATCCTACCATGGCGCAAATCAAAGCACAAAAGGAGAAGAAGAGAAAGAAATCCAAGGCAAAGGAACAAAGAAGAACCATGAAGCAAGAAGGTGTTGTTGAAGGAGCCTTGCCAGCCAAGCATCATGAGAACGTTAGGAACAATAAGGAGTTTTTCAAGAAGAATCAAATTTCTACAAGAGAATCTTTAGCTTACAATAAAGTAGGAATCAATAAGGGATCCTACCCTCCATGTCCACATTGCAATATATAG

Protein sequence

MEAYNMKALDIWEAVEEDYEISALPDNPTMAQIKAQKEKKRKKSKAKEQRRTMKQEGVVEGALPAKHHENVRNNKEFFKKNQISTRESLAYNKVGINKGSYPPCPHCNI

Homology

[Close]

BLAST of CsaV3_5G015010 vs. NCBI nr
Match: XP_008462933.1 (PREDICTED: uncharacterized protein LOC103501196 [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 6.3e-18
Identity = 46/57 (80.70%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 53  MKQEGVVEGALPAKHHENVRNN-KEFFKKNQISTRESLAYNKVGINKGSYPPCPHCN 109
           M+QEG VEGALPAKH +NVRNN K+FFKKNQISTRES AYNK G+ KGSYPPC HCN
Sbjct: 1   MRQEGAVEGALPAKHRKNVRNNKKKFFKKNQISTRESSAYNKAGVKKGSYPPCSHCN 57

[Close]

BLAST of CsaV3_5G015010 vs. NCBI nr
Match: XP_010658657.1 (PREDICTED: uncharacterized protein LOC100854523 [Vitis vinifera])

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 49/156 (31.41%), Postives = 68/156 (43.59%), Query Frame = 0


Query: 1   MEAYNMKALDIWEAVEEDYEISALPDNPTMAQIK-------------------------- 60
           MEAY + A+D+WEAVE+DY+I  + DNPTMAQ+K                          
Sbjct: 1   MEAY-LDAVDLWEAVEDDYDIPLILDNPTMAQVKNHKERKTRKSKAKACLFAAISATIFT 60

Query: 61  ------------------AQXXXXXXXXXXXXXXXTMKQEGVVEGALPAKHHENVRNNKE 109
                              +                M+QE  V+ ALPAKH +  RN K+
Sbjct: 61  RIMSLKSAKVIWSYLKFEYEGDDRIKGMKAQEQWMVMRQEATVDEALPAKHEDGWRNKKK 120

[Close]

BLAST of CsaV3_5G015010 vs. NCBI nr
Match: CAN66099.1 (hypothetical protein VITISV_009519 [Vitis vinifera])

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 49/156 (31.41%), Postives = 68/156 (43.59%), Query Frame = 0


Query: 1   MEAYNMKALDIWEAVEEDYEISALPDNPTMAQIK-------------------------- 60
           MEAY + A+D+WEAVE+DY+I  + DNPTMAQ+K                          
Sbjct: 1   MEAY-LDAVDLWEAVEDDYDIPLILDNPTMAQVKNHKERKTRKSKAKACLFAAISATIFT 60

Query: 61  ------------------AQXXXXXXXXXXXXXXXTMKQEGVVEGALPAKHHENVRNNKE 109
                              +                M+QE  V+ ALPAKH +  RN K+
Sbjct: 61  RIMSLKSAKVIWSYLKFEYEGDDRIKGMKAQEQWMVMRQEATVDEALPAKHEDGWRNKKK 120

[Close]

BLAST of CsaV3_5G015010 vs. NCBI nr
Match: XP_022986164.1 (uncharacterized protein LOC111483984 [Cucurbita maxima])

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-09
Identity = 50/155 (32.26%), Postives = 63/155 (40.65%), Query Frame = 0


Query: 1   MEAYNMKALDIWEAVEEDYEISALPDNPTMAQIKAQ------------------------ 60
           M+ Y ++ALD+WEA+EEDYE+  LP NPT+AQIKA+                        
Sbjct: 27  MKTY-LEALDLWEAIEEDYEVLPLPANPTVAQIKAEYEEDERIRGMRVLNLIKDFELQKM 86

Query: 61  ---------------------XXXXXXXXXXXXXXXTMKQEGVVEGALPAKHHE-NVRNN 108
                                               +M QEGV+EG LP  H + N+  N
Sbjct: 87  KESKSVKEYFDRLPSIANKVRLLELLNALQAQDQRSSMSQEGVIEGVLPVNHQDNNMYKN 146

[Close]

BLAST of CsaV3_5G015010 vs. NCBI nr
Match: KHN01139.1 (hypothetical protein glysoja_008041, partial [Glycine soja])

HSP 1 Score: 67.4 bits (163), Expect = 3.5e-08
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 53  MKQEGVVEGALPAKHHENVRNNKEFFKKNQISTRESLAYNKVGINKGSYPPCPHC 108
           M+Q+ VVEGALPAKHHE   + K+FFKKNQ ++ E+ A N+    K +YPPC HC
Sbjct: 179 MRQDRVVEGALPAKHHEVDESKKDFFKKNQPASSENSANNQGKDKKKNYPPCQHC 233

[Close]

BLAST of CsaV3_5G015010 vs. TrEMBL
Match: tr|A0A1S3CII8|A0A1S3CII8_CUCME (uncharacterized protein LOC103501196 OS=Cucumis melo OX=3656 GN=LOC103501196 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.2e-18
Identity = 46/57 (80.70%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 53  MKQEGVVEGALPAKHHENVRNN-KEFFKKNQISTRESLAYNKVGINKGSYPPCPHCN 109
           M+QEG VEGALPAKH +NVRNN K+FFKKNQISTRES AYNK G+ KGSYPPC HCN
Sbjct: 1   MRQEGAVEGALPAKHRKNVRNNKKKFFKKNQISTRESSAYNKAGVKKGSYPPCSHCN 57

[Close]

BLAST of CsaV3_5G015010 vs. TrEMBL
Match: tr|A5BWN5|A5BWN5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_009519 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 49/156 (31.41%), Postives = 68/156 (43.59%), Query Frame = 0


Query: 1   MEAYNMKALDIWEAVEEDYEISALPDNPTMAQIK-------------------------- 60
           MEAY + A+D+WEAVE+DY+I  + DNPTMAQ+K                          
Sbjct: 1   MEAY-LDAVDLWEAVEDDYDIPLILDNPTMAQVKNHKERKTRKSKAKACLFAAISATIFT 60

Query: 61  ------------------AQXXXXXXXXXXXXXXXTMKQEGVVEGALPAKHHENVRNNKE 109
                              +                M+QE  V+ ALPAKH +  RN K+
Sbjct: 61  RIMSLKSAKVIWSYLKFEYEGDDRIKGMKAQEQWMVMRQEATVDEALPAKHEDGWRNKKK 120

[Close]

BLAST of CsaV3_5G015010 vs. TrEMBL
Match: tr|A0A0B2QXU6|A0A0B2QXU6_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja OX=3848 GN=glysoja_032262 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.7e-07
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 53  MKQEGVVEGALPAKHHENVRNNKEFFKKNQISTRESLAYNKVGINKGSYPPCPHC 108
           M+Q+ VVEG L AKHHE   + K+FFKKNQ ++ E+ A N+    K +YPPC HC
Sbjct: 179 MRQDRVVEGVLTAKHHEVDESKKDFFKKNQPASSENSANNQGKDKKKNYPPCQHC 233

[Close]

BLAST of CsaV3_5G015010 vs. TrEMBL
Match: tr|A0A1S3C2Q5|A0A1S3C2Q5_CUCME (uncharacterized protein LOC103496228 OS=Cucumis melo OX=3656 GN=LOC103496228 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.4e-07
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 1  MEAYNMKALDIWEAVEEDYEISALPDNPTMAQIKAQ 37
          MEAY M+ALDIWEAVEEDYEI ALP+NPTMAQIK Q
Sbjct: 29 MEAY-MEALDIWEAVEEDYEIPALPNNPTMAQIKVQ 63

[Close]

BLAST of CsaV3_5G015010 vs. TrEMBL
Match: tr|A0A1U8PVI3|A0A1U8PVI3_GOSHI (uncharacterized protein LOC107963088 OS=Gossypium hirsutum OX=3635 GN=LOC107963088 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 0


Query: 52  TMKQEGVVEGALPAKHHENVRNNKEFFKKNQISTRESLAYN----KVGINKGSYPPCPHC 108
           +M+QEGV+EGALP KH +N R  K+   KNQ ++ E+L+ N    K G  K SYPPC HC
Sbjct: 204 SMRQEGVIEGALPVKHQDNNRYKKKKNFKNQSTSGENLSDNYQKSKRGGVKKSYPPCHHC 263

HSP 2 Score: 53.1 bits (126), Expect = 4.5e-04
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1  MEAYNMKALDIWEAVEEDYEISALPDNPTMAQIKAQ 37
          ME Y ++ALD+WE +EEDYE+  LP NPT+AQIKAQ
Sbjct: 27 METY-LEALDLWEPIEEDYEVPPLPANPTVAQIKAQ 61

The following BLAST results are available for this feature:

BLAST of CsaV3_5G015010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462933.1	6.3e-18	80.70	PREDICTED: uncharacterized protein LOC103501196 [Cucumis melo]	[more]
XP_010658657.1	1.7e-10	31.41	PREDICTED: uncharacterized protein LOC100854523 [Vitis vinifera]	[more]
CAN66099.1	1.7e-10	31.41	hypothetical protein VITISV_009519 [Vitis vinifera]	[more]
XP_022986164.1	1.8e-09	32.26	uncharacterized protein LOC111483984 [Cucurbita maxima]	[more]
KHN01139.1	3.5e-08	56.36	hypothetical protein glysoja_008041, partial [Glycine soja]	[more]

BLAST of CsaV3_5G015010 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G015010 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G015010 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CII8\|A0A1S3CII8_CUCME	4.2e-18	80.70	uncharacterized protein LOC103501196 OS=Cucumis melo OX=3656 GN=LOC103501196 PE=...	[more]
tr\|A5BWN5\|A5BWN5_VITVI	1.1e-10	31.41	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_009519 PE=4 SV=1	[more]
tr\|A0A0B2QXU6\|A0A0B2QXU6_GLYSO	5.7e-07	52.73	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycin...	[more]
tr\|A0A1S3C2Q5\|A0A1S3C2Q5_CUCME	7.4e-07	86.11	uncharacterized protein LOC103496228 OS=Cucumis melo OX=3656 GN=LOC103496228 PE=...	[more]
tr\|A0A1U8PVI3\|A0A1U8PVI3_GOSHI	1.1e-05	51.67	uncharacterized protein LOC107963088 OS=Gossypium hirsutum OX=3635 GN=LOC1079630...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G015010.1	CsaV3_5G015010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..79

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G015010	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G015010	Cucumber (Gy14) v1	cgycucB564
CsaV3_5G015010	Cucurbita maxima (Rimu)	cmacucB0878
CsaV3_5G015010	Cucurbita maxima (Rimu)	cmacucB0879
CsaV3_5G015010	Cucurbita moschata (Rifu)	cmocucB0861
CsaV3_5G015010	Cucurbita moschata (Rifu)	cmocucB0867
CsaV3_5G015010	Cucurbita pepo (Zucchini)	cpecucB0533
CsaV3_5G015010	Wild cucumber (PI 183967)	cpicucB286
CsaV3_5G015010	Bottle gourd (USVL1VR-Ls)	cuclsiB395
CsaV3_5G015010	Melon (DHL92) v3.5.1	cucmeB400
CsaV3_5G015010	Melon (DHL92) v3.6.1	cucmedB393
CsaV3_5G015010	Watermelon (Charleston Gray)	cucwcgB427