CsaV3_5G014920 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G014920
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H
Locationchr5 : 12048321 .. 12048572 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTAAAATTAAGCACTCTAATTCTACCCCGTACTGCCCTAAGATGAATGGAGCAGTAGAGGCGGCAAATAAAAATATCAAAAAAATCATTGAAAAGATGACTGTCACATATAAAGATTGGCATGAGATGTTACCATTTGCATTACACTGTTACCGAACGTCAGTTCGCACATCAATTGGGGCAACTCCTTTTTCTTTGGTGTATGGCATGGAAGCTGTTTTGCCTATTGAGGTCGAGGTGCTATCCCTCAGG

mRNA sequence

TTTAAAATTAAGCACTCTAATTCTACCCCGTACTGCCCTAAGATGAATGGAGCAGTAGAGGCGGCAAATAAAAATATCAAAAAAATCATTGAAAAGATGACTGTCACATATAAAGATTGGCATGAGATGTTACCATTTGCATTACACTGTTACCGAACGTCAGTTCGCACATCAATTGGGGCAACTCCTTTTTCTTTGGTGTATGGCATGGAAGCTGTTTTGCCTATTGAGGTCGAGGTGCTATCCCTCAGG

Coding sequence (CDS)

TTTAAAATTAAGCACTCTAATTCTACCCCGTACTGCCCTAAGATGAATGGAGCAGTAGAGGCGGCAAATAAAAATATCAAAAAAATCATTGAAAAGATGACTGTCACATATAAAGATTGGCATGAGATGTTACCATTTGCATTACACTGTTACCGAACGTCAGTTCGCACATCAATTGGGGCAACTCCTTTTTCTTTGGTGTATGGCATGGAAGCTGTTTTGCCTATTGAGGTCGAGGTGCTATCCCTCAGG

Protein sequence

FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIGATPFSLVYGMEAVLPIEVEVLSLR
Homology
[Close]
BLAST of CsaV3_5G014920 vs. NCBI nr
Match: XP_022150030.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 9.7e-35
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 0 

Query: 1    FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
            FKIKH NSTPY PKMNGAVEAANKNIK+I+EKMTVTY+DWHEMLPFALH YRTSVRTS G
Sbjct: 1467 FKIKHLNSTPYRPKMNGAVEAANKNIKRIVEKMTVTYRDWHEMLPFALHGYRTSVRTSTG 1526

Query: 61   ATPFSLVYGMEAVLPIEVEVLSLR 85
            ATPFSLVYGMEAVLPIEVE+ SLR
Sbjct: 1527 ATPFSLVYGMEAVLPIEVEIPSLR 1550

[Close]
BLAST of CsaV3_5G014920 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 153.7 bits (387), Expect = 2.8e-34
Identity = 74/84 (88.10%), Postives = 78/84 (92.86%), Query Frame = 0 

Query: 1    FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
            FKIKH NSTPY PKMNGAVEAANKNIK+I+EKMTVTY+DWHEMLPFALH YRTSVRTS G
Sbjct: 2063 FKIKHLNSTPYRPKMNGAVEAANKNIKRIVEKMTVTYRDWHEMLPFALHGYRTSVRTSTG 2122

Query: 61   ATPFSLVYGMEAVLPIEVEVLSLR 85
            ATPFSLVYGME VLPIEVE+ SLR
Sbjct: 2123 ATPFSLVYGMEVVLPIEVEIPSLR 2146

[Close]
BLAST of CsaV3_5G014920 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 153.7 bits (387), Expect = 2.8e-34
Identity = 74/84 (88.10%), Postives = 79/84 (94.05%), Query Frame = 0 

Query: 1    FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
            FKIKH NSTPY PKMNGAVEAANKNIK+I+EKMTVTY+DWHEMLPFALH YRTSVRTS G
Sbjct: 1672 FKIKHFNSTPYRPKMNGAVEAANKNIKRIVEKMTVTYRDWHEMLPFALHGYRTSVRTSTG 1731

Query: 61   ATPFSLVYGMEAVLPIEVEVLSLR 85
            ATPFSLVYGM+AVLPIEVE+ SLR
Sbjct: 1732 ATPFSLVYGMKAVLPIEVEIPSLR 1755

[Close]
BLAST of CsaV3_5G014920 vs. NCBI nr
Match: XP_025981713.1 (uncharacterized protein LOC112999606, partial [Glycine max])

HSP 1 Score: 152.9 bits (385), Expect = 4.8e-34
Identity = 75/84 (89.29%), Postives = 78/84 (92.86%), Query Frame = 0 

Query: 1    FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
            FKI+H NSTPY PKMNGAVEAANKNIKKII+KMTV+YKDWHEMLPFALH YRTSVRTS G
Sbjct: 1296 FKIQHHNSTPYRPKMNGAVEAANKNIKKIIQKMTVSYKDWHEMLPFALHGYRTSVRTSTG 1355

Query: 61   ATPFSLVYGMEAVLPIEVEVLSLR 85
            ATPFSLVYGMEAVLP EVEV SLR
Sbjct: 1356 ATPFSLVYGMEAVLPFEVEVPSLR 1379

[Close]
BLAST of CsaV3_5G014920 vs. NCBI nr
Match: XP_017423386.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC108332575 [Vigna angularis])

HSP 1 Score: 152.1 bits (383), Expect = 8.2e-34
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 0 

Query: 1    FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
            FKI H NS+PY PKMNGAVEAANKNIKKI++KM VTYKDWHEMLPFALH YRTSVRTS G
Sbjct: 1769 FKIHHHNSSPYRPKMNGAVEAANKNIKKIVQKMVVTYKDWHEMLPFALHGYRTSVRTSTG 1828

Query: 61   ATPFSLVYGMEAVLPIEVEVLSLR 85
            ATPFSLVYGMEAVLP EVE+LSLR
Sbjct: 1829 ATPFSLVYGMEAVLPFEVEILSLR 1852

[Close]
BLAST of CsaV3_5G014920 vs. Swiss-Prot
Match: sp|P27401|POL_SFV3L (Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) OX=11644 GN=pol PE=3 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 3.5e-04
Identity = 23/69 (33.33%), Postives = 38/69 (55.07%), Query Frame = 0 

Query: 8    STPYCPKMNGAVEAANKNIKKIIEKMTV-TYKDWHEMLPFALHCYRTSVRTSIGATPFSL 67
            STPY P+ +G VE  N +IK+++ K+ V     W+++LP        S   S   TP  L
Sbjct: 959  STPYHPQSSGKVERKNSDIKRLLTKLLVGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQL 1018

Query: 68   VYGMEAVLP 76
            ++G+++  P
Sbjct: 1019 LFGIDSNTP 1027

[Close]
BLAST of CsaV3_5G014920 vs. Swiss-Prot
Match: sp|P23074|POL_SFV1 (Pro-Pol polyprotein OS=Simian foamy virus type 1 OX=338478 GN=pol PE=1 SV=3)

HSP 1 Score: 45.1 bits (105), Expect = 4.6e-04
Identity = 22/69 (31.88%), Postives = 38/69 (55.07%), Query Frame = 0 

Query: 8    STPYCPKMNGAVEAANKNIKKIIEKMTV-TYKDWHEMLPFALHCYRTSVRTSIGATPFSL 67
            STPY P+ +G VE  N +IK+++ K+ +     W+++LP        S   S   TP  L
Sbjct: 959  STPYHPQSSGKVERKNSDIKRLLTKLLIGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQL 1018

Query: 68   VYGMEAVLP 76
            ++G+++  P
Sbjct: 1019 LFGVDSNTP 1027

[Close]
BLAST of CsaV3_5G014920 vs. TrEMBL
Match: tr|A0A1S3DWI8|A0A1S3DWI8_CICAR (LOW QUALITY PROTEIN: uncharacterized protein LOC101488624 OS=Cicer arietinum OX=3827 GN=LOC101488624 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.1e-34
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 0 

Query: 1    FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
            FKI+H NS+PY PKMNGAVEAANKNIKKII+KM +TYKDWHEMLPFALH YRTSVRTS G
Sbjct: 1917 FKIQHHNSSPYRPKMNGAVEAANKNIKKIIQKMVITYKDWHEMLPFALHGYRTSVRTSTG 1976

Query: 61   ATPFSLVYGMEAVLPIEVEVLSLR 85
            ATPFSLVYGMEAVLPIEVE+ SLR
Sbjct: 1977 ATPFSLVYGMEAVLPIEVEIPSLR 2000

[Close]
BLAST of CsaV3_5G014920 vs. TrEMBL
Match: tr|A0A1S3EI61|A0A1S3EI61_CICAR (LOW QUALITY PROTEIN: uncharacterized protein LOC101491528 OS=Cicer arietinum OX=3827 GN=LOC101491528 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.1e-34
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 0 

Query: 1    FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
            FKI+H NS+PY PKMNGAVEAANKNIKKII+KM +TYKDWHEMLPFALH YRTSVRTS G
Sbjct: 2137 FKIQHHNSSPYRPKMNGAVEAANKNIKKIIQKMVITYKDWHEMLPFALHGYRTSVRTSTG 2196

Query: 61   ATPFSLVYGMEAVLPIEVEVLSLR 85
            ATPFSLVYGMEAVLPIEVE+ SLR
Sbjct: 2197 ATPFSLVYGMEAVLPIEVEIPSLR 2220

[Close]
BLAST of CsaV3_5G014920 vs. TrEMBL
Match: tr|A0A1S3E5Y9|A0A1S3E5Y9_CICAR (uncharacterized protein LOC105852123 OS=Cicer arietinum OX=3827 GN=LOC105852123 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.1e-34
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 0 

Query: 1  FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
          FKI+H NS+PY PKMNGAVEAANKNIKKII+KM +TYKDWHEMLPFALH YRTSVRTS G
Sbjct: 9  FKIQHHNSSPYRPKMNGAVEAANKNIKKIIQKMVITYKDWHEMLPFALHGYRTSVRTSTG 68

Query: 61 ATPFSLVYGMEAVLPIEVEVLSLR 85
          ATPFSLVYGMEAVLPIEVE+ SLR
Sbjct: 69 ATPFSLVYGMEAVLPIEVEIPSLR 92

[Close]
BLAST of CsaV3_5G014920 vs. TrEMBL
Match: tr|A0A1S3EEX1|A0A1S3EEX1_CICAR (uncharacterized protein LOC101510858 OS=Cicer arietinum OX=3827 GN=LOC101510858 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 7.1e-34
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 0 

Query: 1    FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
            FKI+H NS+PY PKMNGAVEAANKNIKKII+KM +TYKDWHEMLPFALH YRTSVRTS G
Sbjct: 2004 FKIQHHNSSPYRPKMNGAVEAANKNIKKIIQKMVITYKDWHEMLPFALHGYRTSVRTSTG 2063

Query: 61   ATPFSLVYGMEAVLPIEVEVLSLR 85
            ATPFSLVYGMEAVLPIEVE+ SLR
Sbjct: 2064 ATPFSLVYGMEAVLPIEVEIPSLR 2087

[Close]
BLAST of CsaV3_5G014920 vs. TrEMBL
Match: tr|A0A2K3KFH2|A0A2K3KFH2_TRIPR (Gag-pol polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g054336 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-33
Identity = 72/84 (85.71%), Postives = 78/84 (92.86%), Query Frame = 0 

Query: 1   FKIKHSNSTPYCPKMNGAVEAANKNIKKIIEKMTVTYKDWHEMLPFALHCYRTSVRTSIG 60
           FKI+H NS+PY PKMNGAVEAANKNIKKII+KM VTYKDWHEMLPFALH YRTSVRTS G
Sbjct: 168 FKIEHHNSSPYRPKMNGAVEAANKNIKKIIQKMVVTYKDWHEMLPFALHGYRTSVRTSTG 227

Query: 61  ATPFSLVYGMEAVLPIEVEVLSLR 85
           ATPFSLVYGMEAVLP+EVE+ S+R
Sbjct: 228 ATPFSLVYGMEAVLPVEVEIPSMR 251

The following BLAST results are available for this feature:
BLAST of CsaV3_5G014920 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150030.19.7e-3589.29LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia][more]
XP_022147189.12.8e-3488.10LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia][more]
XP_022158986.12.8e-3488.10LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia][more]
XP_025981713.14.8e-3489.29uncharacterized protein LOC112999606, partial [Glycine max][more]
XP_017423386.18.2e-3486.90PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC108332575 [Vigna angu... [more]
BLAST of CsaV3_5G014920 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G014920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P27401|POL_SFV3L3.5e-0433.33Pro-Pol polyprotein OS=Simian foamy virus type 3 (strain LK3) OX=11644 GN=pol PE... [more]
sp|P23074|POL_SFV14.6e-0431.88Pro-Pol polyprotein OS=Simian foamy virus type 1 OX=338478 GN=pol PE=1 SV=3[more]
BLAST of CsaV3_5G014920 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3DWI8|A0A1S3DWI8_CICAR7.1e-3486.90LOW QUALITY PROTEIN: uncharacterized protein LOC101488624 OS=Cicer arietinum OX=... [more]
tr|A0A1S3EI61|A0A1S3EI61_CICAR7.1e-3486.90LOW QUALITY PROTEIN: uncharacterized protein LOC101491528 OS=Cicer arietinum OX=... [more]
tr|A0A1S3E5Y9|A0A1S3E5Y9_CICAR7.1e-3486.90uncharacterized protein LOC105852123 OS=Cicer arietinum OX=3827 GN=LOC105852123 ... [more]
tr|A0A1S3EEX1|A0A1S3EEX1_CICAR7.1e-3486.90uncharacterized protein LOC101510858 OS=Cicer arietinum OX=3827 GN=LOC101510858 ... [more]
tr|A0A2K3KFH2|A0A2K3KFH2_TRIPR1.2e-3385.71Gag-pol polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g054336 PE... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G014920.1CsaV3_5G014920.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3DG3DSA:3.30.420.10coord: 1..83
e-value: 2.1E-24
score: 87.8
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 3..77
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..71
score: 9.644
IPR012337Ribonuclease H-like superfamilySUPERFAMILYSSF53098Ribonuclease H-likecoord: 2..77

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G014920Melon (DHL92) v3.6.1cucmedB393
CsaV3_5G014920Watermelon (Charleston Gray)cucwcgB427
CsaV3_5G014920Cucumber (Gy14) v2cgybcucB232
CsaV3_5G014920Cucurbita maxima (Rimu)cmacucB0879
CsaV3_5G014920Cucurbita moschata (Rifu)cmocucB0867
CsaV3_5G014920Wild cucumber (PI 183967)cpicucB286
CsaV3_5G014920Bottle gourd (USVL1VR-Ls)cuclsiB395
CsaV3_5G014920Melon (DHL92) v3.5.1cucmeB400