CsaV3_5G014850 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G014850
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5 : 11955939 .. 11956315 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACGTGCCAAACTATTCACCTTCTTCTTCCTTCAAAGAACCCTAGCCGTTGCCGCCTCTAACTGCCTTCGTTCACCGTCGAGCGATGCTCCGTTCAAGACGTTTTTCATCGCATCAAGTAGACCCGCAAAGTGTCGTTGTCGACCGAGCTTTTCCGCCAAGTTTAAGCGCAAAGTGATTCTCCTTCGGGTCGTGTGTCCCGAACTGGAACAAATCGAAACTGAAGATCGGTCTCGATGTTTCTCCATTGTATGAAATCAGACTCTGATGACATCTCCACCTCTGTTCATTATCTTTTGCAAGCTACCGTCGCAAGCCAAACTCCCAGATTGAGCCACACGCGCCAGTTACCATTTACCCGAGCTGATCTCTAG

mRNA sequence

ATGAAACGTGCCAAACTATTCACCTTCTTCTTCCTTCAAAGAACCCTAGCCGTTGCCGCCTCTAACTGCCTTCGTTCACCGTCGAGCGATGCTCCGTTCAAGACGTTTTTCATCGCATCAAGTAGACCCGCAAAGTGTCGTTGTCGACCGAGCTTTTCCGCCAAGTTTAAGCGCAAAGTGATTCTCCTTCGGGTCGTGTGTCCCGAACTGGAACAAATCGAAACTGAAGATCGGTCTCGATACTCTGATGACATCTCCACCTCTGTTCATTATCTTTTGCAAGCTACCGTCGCAAGCCAAACTCCCAGATTGAGCCACACGCGCCAGTTACCATTTACCCGAGCTGATCTCTAG

Coding sequence (CDS)

ATGAAACGTGCCAAACTATTCACCTTCTTCTTCCTTCAAAGAACCCTAGCCGTTGCCGCCTCTAACTGCCTTCGTTCACCGTCGAGCGATGCTCCGTTCAAGACGTTTTTCATCGCATCAAGTAGACCCGCAAAGTGTCGTTGTCGACCGAGCTTTTCCGCCAAGTTTAAGCGCAAAGTGATTCTCCTTCGGGTCGTGTGTCCCGAACTGGAACAAATCGAAACTGAAGATCGGTCTCGATACTCTGATGACATCTCCACCTCTGTTCATTATCTTTTGCAAGCTACCGTCGCAAGCCAAACTCCCAGATTGAGCCACACGCGCCAGTTACCATTTACCCGAGCTGATCTCTAG

Protein sequence

MKRAKLFTFFFLQRTLAVAASNCLRSPSSDAPFKTFFIASSRPAKCRCRPSFSAKFKRKVILLRVVCPELEQIETEDRSRYSDDISTSVHYLLQATVASQTPRLSHTRQLPFTRADL

Homology

[Close]

BLAST of CsaV3_5G014850 vs. NCBI nr
Match: KGN49638.1 (hypothetical protein Csa_5G037000 [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 2.5e-57
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MKRAKLFTFFFLQRTLAVAASNCLRSPSSDAPFKTFFIASSRPAKCRCRPSFSAKFKRKV 60
           MKRAKLFTFFFLQRTLAVAASNCLRSPSSDAPFKTFFIASSRPAKCRCRPSFSAKFKRKV
Sbjct: 1   MKRAKLFTFFFLQRTLAVAASNCLRSPSSDAPFKTFFIASSRPAKCRCRPSFSAKFKRKV 60

Query: 61  ILLRVVCPELEQIETEDRSRYSDDISTSVHYLLQATVASQTPRLSHTRQLPFTRADL 118
           ILLRVVCPELEQIETEDRSRYSDDISTSVHYLLQATVASQTPRLSHTRQLPFTRADL
Sbjct: 61  ILLRVVCPELEQIETEDRSRYSDDISTSVHYLLQATVASQTPRLSHTRQLPFTRADL 117

[Close]

BLAST of CsaV3_5G014850 vs. TrEMBL
Match: tr|A0A0A0KJB0|A0A0A0KJB0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G037000 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.7e-57
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MKRAKLFTFFFLQRTLAVAASNCLRSPSSDAPFKTFFIASSRPAKCRCRPSFSAKFKRKV 60
           MKRAKLFTFFFLQRTLAVAASNCLRSPSSDAPFKTFFIASSRPAKCRCRPSFSAKFKRKV
Sbjct: 1   MKRAKLFTFFFLQRTLAVAASNCLRSPSSDAPFKTFFIASSRPAKCRCRPSFSAKFKRKV 60

Query: 61  ILLRVVCPELEQIETEDRSRYSDDISTSVHYLLQATVASQTPRLSHTRQLPFTRADL 118
           ILLRVVCPELEQIETEDRSRYSDDISTSVHYLLQATVASQTPRLSHTRQLPFTRADL
Sbjct: 61  ILLRVVCPELEQIETEDRSRYSDDISTSVHYLLQATVASQTPRLSHTRQLPFTRADL 117

The following BLAST results are available for this feature:

BLAST of CsaV3_5G014850 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49638.1	2.5e-57	100.00	hypothetical protein Csa_5G037000 [Cucumis sativus]	[more]

BLAST of CsaV3_5G014850 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G014850 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G014850 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJB0\|A0A0A0KJB0_CUCSA	1.7e-57	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G037000 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G014850.1	CsaV3_5G014850.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G014850	CSPI05G01010	Wild cucumber (PI 183967)	cpicucB286

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G014850	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G014850	Cucumber (Gy14) v1	cgycucB246
CsaV3_5G014850	Cucurbita maxima (Rimu)	cmacucB0879
CsaV3_5G014850	Cucurbita moschata (Rifu)	cmocucB0867
CsaV3_5G014850	Melon (DHL92) v3.5.1	cucmeB400
CsaV3_5G014850	Melon (DHL92) v3.6.1	cucmedB393