CsaV3_5G014760 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G014760
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5 : 11869643 .. 11869906 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGAAGTTGCAAATTGCCGACATAGGGATGGGACGTTGGAAGTCCCCAGTTGCCAACATGCTACTTCCGTCAGCATTGCACGTGTTGGGAGAAATGCATTCCTGACACCTTCTCGCTGTCGAGTTGGGAATGACTTCCTTGACGCACTACTATCGACGTTCTTTCTGACGACACAATGTATTTCGGGAGAGCCTTTCCCAAAGTTGTTTGTTATATATACTGACACCTTCTTGCATATGGAGACTCTTGAATTCTTGTAG

mRNA sequence

ATGCTAGAAGTTGCAAATTGCCGACATAGGGATGGGACGTTGGAAGTCCCCAGTTGCCAACATGCTACTTCCGTCAGCATTGCACGTGTTGGGAGAAATGCATTCCTGACACCTTCTCGCTGTCGAGTTGGGAATGACTTCCTTGACGCACTACTATCGACGTTCTTTCTGACGACACAATGTATTTCGGGAGAGCCTTTCCCAAAGTTGTTTGTTATATATACTGACACCTTCTTGCATATGGAGACTCTTGAATTCTTGTAG

Coding sequence (CDS)

ATGCTAGAAGTTGCAAATTGCCGACATAGGGATGGGACGTTGGAAGTCCCCAGTTGCCAACATGCTACTTCCGTCAGCATTGCACGTGTTGGGAGAAATGCATTCCTGACACCTTCTCGCTGTCGAGTTGGGAATGACTTCCTTGACGCACTACTATCGACGTTCTTTCTGACGACACAATGTATTTCGGGAGAGCCTTTCCCAAAGTTGTTTGTTATATATACTGACACCTTCTTGCATATGGAGACTCTTGAATTCTTGTAG

Protein sequence

MLEVANCRHRDGTLEVPSCQHATSVSIARVGRNAFLTPSRCRVGNDFLDALLSTFFLTTQCISGEPFPKLFVIYTDTFLHMETLEFL

Homology

[Close]

BLAST of CsaV3_5G014760 vs. NCBI nr
Match: KGN49634.1 (hypothetical protein Csa_5G034250 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 7.7e-43
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MLEVANCRHRDGTLEVPSCQHATSVSIARVGRNAFLTPSRCRVGNDFLDALLSTFFLTTQ 60
          MLEVANCRHRDGTLEVPSCQHATSVSIARVGRNAFLTPSRCRVGNDFLDALLSTFFLTTQ
Sbjct: 1  MLEVANCRHRDGTLEVPSCQHATSVSIARVGRNAFLTPSRCRVGNDFLDALLSTFFLTTQ 60

Query: 61 CISGEPFPKLFVIYTDTFLHMETLEFL 88
          CISGEPFPKLFVIYTDTFLHMETLEFL
Sbjct: 61 CISGEPFPKLFVIYTDTFLHMETLEFL 87

[Close]

BLAST of CsaV3_5G014760 vs. TrEMBL
Match: tr|A0A0A0KLA5|A0A0A0KLA5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G034250 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.1e-43
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MLEVANCRHRDGTLEVPSCQHATSVSIARVGRNAFLTPSRCRVGNDFLDALLSTFFLTTQ 60
          MLEVANCRHRDGTLEVPSCQHATSVSIARVGRNAFLTPSRCRVGNDFLDALLSTFFLTTQ
Sbjct: 1  MLEVANCRHRDGTLEVPSCQHATSVSIARVGRNAFLTPSRCRVGNDFLDALLSTFFLTTQ 60

Query: 61 CISGEPFPKLFVIYTDTFLHMETLEFL 88
          CISGEPFPKLFVIYTDTFLHMETLEFL
Sbjct: 61 CISGEPFPKLFVIYTDTFLHMETLEFL 87

The following BLAST results are available for this feature:

BLAST of CsaV3_5G014760 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49634.1	7.7e-43	100.00	hypothetical protein Csa_5G034250 [Cucumis sativus]	[more]

BLAST of CsaV3_5G014760 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G014760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G014760 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KLA5\|A0A0A0KLA5_CUCSA	5.1e-43	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G034250 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G014760.1	CsaV3_5G014760.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G014760	CSPI05G00920	Wild cucumber (PI 183967)	cpicucB286

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G014760	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G014760	Cucumber (Gy14) v1	cgycucB246
CsaV3_5G014760	Cucurbita maxima (Rimu)	cmacucB0879
CsaV3_5G014760	Cucurbita moschata (Rifu)	cmocucB0867
CsaV3_5G014760	Melon (DHL92) v3.5.1	cucmeB400
CsaV3_5G014760	Melon (DHL92) v3.6.1	cucmedB393