CsaV3_5G014550 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G014550
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr5 : 11547941 .. 11553519 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGATTATGATGTTGAAGTCTACAACGTAACCATTTTGCAGCTCCCAGAGCTGAAGTTCAGGATTGAAGATCAAGACCATTTGAGGGGAACGTTAATCGCAGAAGCTTGGGGTCTTGAAATGGATCCATTTCTGTTTTTCCTTTTGCTCTTTTACCTTACTTCTAGTACTTTGATATTCTATCATTCACATAAAAATGGTTCAAATTTTGGTTATCTAATATTTTATTTGATTAAGTTATAATTAAAAAACAAAATTAGTTATATAATTCAAATTATAGCCTTCATCTACTTATTAAATATAATTTTCTCTTTTCTCCTTCTCAAGTGAAATTTTTTATAAAAAAAATCATTTATCTTTTGACCACGACAACATTAAATTAACCAATATAATAAAAATAAAGGTGTATTTGGAGCTAAAAGTCGAGTGGGCTATAATACTCCACTCTTTGTTTAGGACAATGTTGGAGATTAGAATTAGGATTTAAAATAACTCATATGTTCTTACTATTCTTCAATCTCAAGGGTATTTATTTCAAGGATTGAGAAGTTTAAGTAGTAAAATTTTCGAACATCACCTTCGGTAATTGTCATTGGTCAATCTTCGACCACCACCTATGGTGACTCCATCGACGACCTTCGACAACCAACTCTGGTTACCACAGTCAACCAAGCTTTGGTTGCCATCAACCAACCTTATTAAAAAAAAATTTTAGGATACATAACAAACCAAAGATACTTATACATACAAGTACCTTTTTAAAAAAAAATTAAAACTTTCCAATAATTGATATTACGTTTTTTTAAATTATTATTATTGTTAGGTTATCTTTTTAAAATTATCTCTCTTCCCTCCTTTGTTTAAAATTAATGTTTTTGGGATAATGCTAGTATAAATATAGTGACATTGTATATAAATCAAATAAACTACATTTGTGTGTTGTATATATGTATGTGTGTATGCGTGTGTATAATTAAGAATATTTAGTTTGGCTATGTATAATTAAGAATATTTAGTTTGGCTATGTATAATTAAGAATATTTAGTTAGCTATATGTATAAAATCCTTAATTTAGGAACATTTTTCACTTTTTTGTTGGTCAATTTAATTGGCTTGAAGATCTAGAATCATCTTTTAAAATTAAAAATTACAATGCTGAAAAAACTTAGCAGCCAAATAAAAATAAAAATGTAGAACTTTTTTATTCTTCAAATATAATTTGATAAAAAAAATATATAACTTTCGAATGATTGAATTCAAGATTAAAATACTAGTTTATTTCCCTTTGAAGTTAGCATATTATGGTAAAAACAAAAATCATGATCTTATCAAGAACAACATAATTAACCATAATTAATAAAATCACAGGTCAATTTGTATAAAAAAGCTTATATGATAAAATTTTATAACACGTACGTGCATCCCACTTAGTAATAAACTAGTTTGTATAAATTGGTGTGGAATGTATAGTTTGAGCTATGTTTTTAAAAAACGATATTTCATGTACCTACATATATGACAAAACAAAATAGTAGGGCAAAAAAAAAAAAAAAACATGATCTAAGGTAACCAATATTTATTTTATAGACTGCTATAATTTGGACTATAATAATTTGCACCACAAACGCAGACTATAATAACCCAGATTATAATACTTTGCATCTTGACACACAGAATATAATAACATACAGTTTATTATCATCCATAGACTATAATAATTGCAAAAAAAGAAAAAATTGCAACGCATTATGACAAAAATTTATTTATTACATGTGTTGGTGAAAAACCTTAGTCACTAAACACTTGTCTAATCTTTCTATGTTTTGTTTTATCCCCCCAGGTAGCAAAGGACGTCCAGCGTTTGACTTGTCGTCTTGGTTGCCTATTGTGCCATAAACGTGTTGCATCATCTTGTTAGTAATCACTGTTAACTCGTATATAGCATGTAAAGTTAGGCAAGCAGAACCAAATGTTTTTTTAGACTTGTATCATGTTGTGAAAACTTCTTGTACTTGTTTAAAATGTACTCTTAATAATATAAATGAAGTATTTGTTATTCCAAAAAGAGTCCTTATCTCGCGTTAAATTTGTTTGTTGTGTTTAATCCACTCACTAGGTTTTCAATGTGTGTTATCTCATGAGGAGGTACATGTTGAGTGTCTAGATGGTCATGCCTTCACATGGTTGCATAAACTGATCTCAAGGCAGGGGATGACAAGTTGGTATCAGAGCATAAGTTCTTGAAAAAAGTCTTAGAAGTTAGAATCATGCATGTAGAGAGTCCCATGAATAGATTTTTGATGCCTAATATATTGATGTATTATAAGGAATTATGGCAATGCGATGACGGTCGAGGTAAGTCAGGCAAGTGACAACTGGTGTTTCCACTACTGGGAGAGCTAATAGAGCACGAGAATCTGATGAGATGTCCAGTAATCCACATCACCCTATAGGACAGAACACAGAGGAAAGTGTATTTGACCTCTTTGCTCAAAGGTTTGGTGATCACTTTATTTCTATACCATCTAATGTAGATAAAAGATTTGATATTGAGAGATTGAAGGCGTTAAAAGCAACAACCTTCGAGGGAACAACAAACTCAGCTGATGCGGAGAAGTGATTGAGTTTAATATAAACTTTTTTTGGAGTGATGGAGTGCCCCGAAGAAAGAAAAGTAAAGCGTTTCAAAATAAGTTTAATAGACATTTTTGTTGCAAGACAACACTGAAGATTGGTGGACTCTTCATGCGGCAAGAGCTAGAAGAATGGGTTTTGTCTTATGAGATGAGTTTAGAAAAGCGTTACAAAATAAGTTTTATCCTCTTTCATTTTGTGATGCAAAGAGGAATGGATTTGTGAATTTAGTGCAAGGTGATACGACTATCGTAGAGTATGAGAAAAATTTTACCAAATTGGCTAAGTATGCATTAGCCTTTGTGATGGATGAGGCAGACAAATGCAAGCATTTTGAAGATGGTTTGAGAACAGAAATACGAGCATTGGTGACGACTAACATGAACTAGTCAGATTTCTCTAAACTGGTTGAGGTAGTCAAGCGAGTTGAGAGATGTTTAGCTGAAGAGGAGAAAAGCAAGGATGTGAAGCAGCCAAAGCACTGGTAATTACGAGTTAGTGAAAGAGGCAATGAGAATAGGCATTTTGTGCCAAACCTTAAGAAAGGAAATTTTAAATCTCATTATCATGTTCCTTCTGGATCAAGAATGAGTTACGGTGAGAATTTCCAAAGACAAATTAAGAATCAAGGGTGAGGAAATGTCCCAGTTAATTGGATAGAGGAAGCTTTCACAAAGAAGACAATAGTTGGATCAAATTTAAACCATGGAGGAAGGCCTAGTTTTCCAAAGGTATGCTTCAATTTCGATCAGCAAGGACATTTTATTAAGTATTTTCCTAACTTGAGAGCTTAAAATACCTAAAGAACCATGTACCAATCTGTAAACCAACCTTATTCCCCAAATGGGAATGGAGAAGAGCCAAGTAGGGTTAAGGGACCTGGGTGTGACTGAAGTCTTAAAGGAAAGTTTACGCTATGACTTAGAGTAAGACAAAAACATAGCCATCAAGTAATTACATGTTCATTAATGGTTTATAATTCTCTTACCCTTGTGTTGATTGGTTTTGAAGCTACACACATTCTTTTATTTTTGAATCGCATGCTGAGTCTTTAAATCATGAGATAGAATCTCTAAAAGGTAAAATGTTGATCAATATACCTTCAGGAGAAGTGTTTTTAGTTGAATCAGTGTGTAAGAATTGCAAGCTAAGGGTTGAAAATGTCACTATGAATTTTATTTGAACTTGACGAGTTAGACGTAATTTTGGGAATGGATTTCCTCACCAAGTACCATGGAGTATTAAATTGTTCTAATAAGTAGGTAGTGTTGAAAGACCATGAGAAATTTGAAGTTAAATTTGTAGGCGATAAGAAGGTGGAATTGGCAAATATAATTTCAATGCTCAAAATAAGGGCATACCTAAAGGGATAAAAGCCCTAGTAGAGGAATAATTTAAAGAGAAACCTTAAATCAATTTAATTGGAAACTTAAAAATACCAGTACATTGAAAAAAAATATTGTAAGACTAAACATGCATTCTAAAAAAAATATAGAAAAAAGGTGTTACACCCTATTTTAGGTTTTCTCCTCTAACCTAGATCGTCACGTGAATCTACTATTTAAAAACATTCATTTTCCAATGTAAGATTGATAAAACACTTTCCAAGAAATTCTATAAACATTTTGACAGAGTTTCCCCTGAAAAATGGACTAACCACACTTGGAAAATAGGAACAAATCCCACTTCTATGCTCTTCAAACTCAAAATAACATCGAGTGTGTCTCGCCACACACTCATCCAAAACAATCCAGAGTCCCAATCAAATTTTAAATACAATCTTAAACATAGTTACAAGGATTACACCAAAAAAAAAATTCCTCACAATTACGTTTCTTAACACAACTGTCACCATTTCTAACCTTATGATGGACACAAAACATAAATATATAGACATACATAGTAAAAAGAAAAAAAATCCACAATCAGTGACGAGACGCTCAACGAAAGTCTGGAACTTGACCGCTACCTTAAAGGAGAGAAGACATGAGCTAAAACTCAATGAGTGACAAGTTTTTAGAAGTAAAAACTCATCAAACATGCTCTCAAGATTGTTTAAAAATGCATCGATAATGAAATAATAATTAGAATGTCATTATTACATATTACATAAATCACAATATTGTTAAGAAACATATGTAGCATATAAGGTTTACCACAACAAAGCGCCTAAATATACGGCCAAGAATAGCTCGCACATGATCAAGAATCATACGGCCAAATTGAGCTCACGTATATTTAGTCTCTACTATAATAGCAATCTTCATCCAATCCAACCATGGTAGAATACTAAATACATGGTCAAGTTAGCTCACACATGATCCATATTCATAAAGAAACACACGGCGAAACTGAGCTCACTCATATTTAATATTTGTCACAGTAGCAACATCCATCTAATCCAACCATGGTAGAATACTAAATACACGGTCTAAAATAGCTCACACGTGATCCATATACAAAAGTAAACACGCGACCAAACTGAGCTCACGACCCAACCCAACCTAATTTAATATAATATATATATATATATATATATATATATATTATAAATTTAATAAAAAAAAAAAAGAAATTAGATTTTCTCAGTTCTCACGTGATAGAAATCATCTCTTCTTAGTTCTCACACGGCACTTCACCTTCGGCTCTTCCTCGCGCACCGCAATATCTCCAACGTTTCCTCTGTCTCTCCTCCTTCGTCTCCTCCAAACTAACTCCATCTCCTCCGTCAAGCCGATCTCAGATCTAAGTCCCTCCATCTCCTCTGATCTCAGATACCCTATGTCTCCTCCGACATCTCTGATCTTCGCTATCTTTGATCTTCGCCAGATCTCAAATCTCCTCCATCCTAGTCAAGCATAAAAATTGTTTGTATTTGACTCTCCTCCATCTATGATCTTCGCCAAATCTCAGATCTTAATTCTCTTAAAAATTAAAAACGA

mRNA sequence

ATGTATGATTATGATGTTGAAGTCTACAACGTAACCATTTTGCAGCTCCCAGAGCTGAAGTTCAGGATTGAAGATCAAGACCATTTGAGGGGAACGCAAGTGACAACTGGTGTTTCCACTACTGGGAGAGCTAATAGAGCACGAGAATCTGATGAGATGTCCAGTAATCCACATCACCCTATAGGACAGAACACAGAGGAAAGTGTATTTGACCTCTTTGCTCAAAGGTTTGGTGATCACTTTATTTCTATACCATCTAATGTAGATAAAAGATTTGATATTGAGAGATTGAAGGCGTTAAAAGCAACAACCTTCGAGGGAACAACAAACTCAGCTGATGCGGAGAAAAAAGCGTTACAAAATAAGTTTTATCCTCTTTCATTTTGTGATGCAAAGAGGAATGGATTTGTGAATTTAGTGCAAGGTGATACGACTATCGTAGAGTATGAGAAAAATTTTACCAAATTGGCTAAGTATGCATTAGCCTTTGTGATGGATGAGGCAGACAAATGCAAGCATTTTGAAGATGGTTTGAGAACAGAAATACGAGCATTGTTCTCACGTGATAGAAATCATCTCTTCTTAGTTCTCACACGGCACTTCACCTTCGGCTCTTCCTCGCGCACCGCAATATCTCCAACGTTTCCTCTGTCTCTCCTCCTTCGTCTCCTCCAAACTAACTCCATCTCCTCCGTCAAGCCGATCTCAGATCTAAGTCCCTCCATCTCCTCTGATCTCAGATACCCTATGTCTCCTCCGACATCTCTGATCTTCGCTATCTTTGATCTTCGCCAGATCTCAAATCTCCTCCATCCTAGTCAAGCATAA

Coding sequence (CDS)

ATGTATGATTATGATGTTGAAGTCTACAACGTAACCATTTTGCAGCTCCCAGAGCTGAAGTTCAGGATTGAAGATCAAGACCATTTGAGGGGAACGCAAGTGACAACTGGTGTTTCCACTACTGGGAGAGCTAATAGAGCACGAGAATCTGATGAGATGTCCAGTAATCCACATCACCCTATAGGACAGAACACAGAGGAAAGTGTATTTGACCTCTTTGCTCAAAGGTTTGGTGATCACTTTATTTCTATACCATCTAATGTAGATAAAAGATTTGATATTGAGAGATTGAAGGCGTTAAAAGCAACAACCTTCGAGGGAACAACAAACTCAGCTGATGCGGAGAAAAAAGCGTTACAAAATAAGTTTTATCCTCTTTCATTTTGTGATGCAAAGAGGAATGGATTTGTGAATTTAGTGCAAGGTGATACGACTATCGTAGAGTATGAGAAAAATTTTACCAAATTGGCTAAGTATGCATTAGCCTTTGTGATGGATGAGGCAGACAAATGCAAGCATTTTGAAGATGGTTTGAGAACAGAAATACGAGCATTGTTCTCACGTGATAGAAATCATCTCTTCTTAGTTCTCACACGGCACTTCACCTTCGGCTCTTCCTCGCGCACCGCAATATCTCCAACGTTTCCTCTGTCTCTCCTCCTTCGTCTCCTCCAAACTAACTCCATCTCCTCCGTCAAGCCGATCTCAGATCTAAGTCCCTCCATCTCCTCTGATCTCAGATACCCTATGTCTCCTCCGACATCTCTGATCTTCGCTATCTTTGATCTTCGCCAGATCTCAAATCTCCTCCATCCTAGTCAAGCATAA

Protein sequence

MYDYDVEVYNVTILQLPELKFRIEDQDHLRGTQVTTGVSTTGRANRARESDEMSSNPHHPIGQNTEESVFDLFAQRFGDHFISIPSNVDKRFDIERLKALKATTFEGTTNSADAEKKALQNKFYPLSFCDAKRNGFVNLVQGDTTIVEYEKNFTKLAKYALAFVMDEADKCKHFEDGLRTEIRALFSRDRNHLFLVLTRHFTFGSSSRTAISPTFPLSLLLRLLQTNSISSVKPISDLSPSISSDLRYPMSPPTSLIFAIFDLRQISNLLHPSQA
Homology
[Close]
BLAST of CsaV3_5G014550 vs. NCBI nr
Match: XP_008464978.1 (PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 4.3e-15
Identity = 44/94 (46.81%), Postives = 65/94 (69.15%), Query Frame = 0 

Query: 92  FDIERLKALKATTFEGTTNSADAE--KKALQNKFYPLSFCDAKRNGFVNLVQGDTTIVEY 151
           + IERLK L AT FEG T+ A+ E  +   + K+YP ++ +AKR+ F+ L QG  ++VEY
Sbjct: 2   YGIERLKKLGATVFEGFTDPANTETFRGIFEEKYYPTTYYEAKRDEFLELKQGSLSVVEY 61

Query: 152 EKNFTKLAKYALAFVMDEADKCKHFEDGLRTEIR 184
           E+ +T+L++YA   V  E+D+C+ FE GLR EIR
Sbjct: 62  ERKYTELSRYAEMIVASESDRCRRFERGLRFEIR 95

[Close]
BLAST of CsaV3_5G014550 vs. NCBI nr
Match: XP_016899851.1 (PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 9.0e-13
Identity = 58/190 (30.53%), Postives = 85/190 (44.74%), Query Frame = 0 

Query: 49  ESDEMSSNPHHPIGQNTEESV-FDLFAQRFGDHFISIPSNVDKRFDIERLKALKATTFEG 108
           +S+  SS P    GQN   S  F   AQ       + PS++DK + IE+LK L AT F+G
Sbjct: 23  QSERGSSTPR---GQNEVGSERFARSAQEISRPERARPSDLDKMYGIEQLKKLGATVFQG 82

Query: 109 TTNSADAE---------------------------------------------------- 168
           +T+ ADAE                                                    
Sbjct: 83  STDPADAEVWLNMLEKCFDVMSCPQEQKVRLATFLLQKEAEGWLKSIIASRNDARTLYWQ 142

Query: 169 --KKALQNKFYPLSFCDAKRNGFVNLVQGDTTIVEYEKNFTKLAKYALAFVMDEADKCKH 184
             +   + K+YP ++C+AKR+ F+ L QG   + EYE+ +T+L++Y    V  E+D+C+ 
Sbjct: 143 TFRGIFEEKYYPTTYCEAKRDEFMELKQGSLLVAEYERKYTELSRYVEMIVASESDRCRR 202

[Close]
BLAST of CsaV3_5G014550 vs. NCBI nr
Match: XP_017629016.1 (PREDICTED: uncharacterized protein LOC108471995 [Gossypium arboreum])

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-12
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = 0 

Query: 116 KKALQNKFYPLSFCDAKRNGFVNLVQGDTTIVEYEKNFTKLAKYALAFVMDEADKCKHFE 175
           K   Q K+   S+ DA+R+ F+NL +GD T+ EYE  F +L++Y    V  E +KC HFE
Sbjct: 45  KTTFQRKYVRTSYVDARRHEFMNLTKGDNTVAEYEAEFLRLSRYTDGMVASEYEKCVHFE 104

Query: 176 DGLRTEIRALFSRDRNHLFLVL 198
           DGLR  +R L +  R H F++L
Sbjct: 105 DGLRDSLRVLIAHQREHEFVIL 126

[Close]
BLAST of CsaV3_5G014550 vs. NCBI nr
Match: XP_008448403.1 (PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-11
Identity = 59/190 (31.05%), Postives = 83/190 (43.68%), Query Frame = 0 

Query: 49  ESDEMSSNPHHPIGQNTEESV-FDLFAQRFGDHFISIPSNVDKRFDIERLKALKATTFEG 108
           +S+  SS P    GQN   S  F   AQ  G      PS+ +K + IERLK L AT FEG
Sbjct: 23  QSERGSSTPR---GQNEAGSERFARSAQEIGRPERVGPSDPEKMYGIERLKKLGATVFEG 82

Query: 109 TTNSADAE---------------------------------------------------- 168
           +T+ A+AE                                                    
Sbjct: 83  STDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQKEAEGWWKSIIARRNDARTLDWQ 142

Query: 169 --KKALQNKFYPLSFCDAKRNGFVNLVQGDTTIVEYEKNFTKLAKYALAFVMDEADKCKH 184
             +   + K+YP ++C+AKR+ F  L QG  ++ EYE+ +T+L++Y    V  E+D+C  
Sbjct: 143 TFRGIFEEKYYPTTYCEAKRDEFQELKQGSLSVAEYERKYTELSRYVEVIVAYESDRCCR 202

[Close]
BLAST of CsaV3_5G014550 vs. NCBI nr
Match: XP_016901625.1 (PREDICTED: uncharacterized protein LOC107991320 [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-11
Identity = 57/158 (36.08%), Postives = 80/158 (50.63%), Query Frame = 0 

Query: 49  ESDEMSSNPHHPIGQNTEESV-FDLFAQRFGDHFISIPSNVDKRFDIERLKALKATTFEG 108
           +S+  SS P    GQN   S  F   AQ  G    + PS+ +K + IERLK L+AT F+G
Sbjct: 23  QSERGSSTPR---GQNEAGSERFSRSAQEIGRPEKAGPSDPEKMYGIERLKKLEATVFDG 82

Query: 109 TTNSADAE----------------------KKALQNKFYPLSFCDAKRNGFVNLVQGDTT 168
           +T+ ADAE                      +   + K+YP ++C+AKR+ F+ L Q   +
Sbjct: 83  STDLADAEVWLNMLEKCFDLMSCPQERKTFRGIFEEKYYPTTYCEAKRDEFLELKQESLS 142

Query: 169 IVEYEKNFTKLAKYALAFVMDEADKCKHFEDGLRTEIR 184
           +VEYE+      KYA   V  E+D+C   E GLR E R
Sbjct: 143 VVEYER------KYAEMIVAFESDRCCRGERGLRFEKR 171

[Close]
BLAST of CsaV3_5G014550 vs. TrEMBL
Match: tr|A0A1S3CMU0|A0A1S3CMU0_CUCME (uncharacterized protein LOC103502718 OS=Cucumis melo OX=3656 GN=LOC103502718 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.9e-15
Identity = 44/94 (46.81%), Postives = 65/94 (69.15%), Query Frame = 0 

Query: 92  FDIERLKALKATTFEGTTNSADAE--KKALQNKFYPLSFCDAKRNGFVNLVQGDTTIVEY 151
           + IERLK L AT FEG T+ A+ E  +   + K+YP ++ +AKR+ F+ L QG  ++VEY
Sbjct: 2   YGIERLKKLGATVFEGFTDPANTETFRGIFEEKYYPTTYYEAKRDEFLELKQGSLSVVEY 61

Query: 152 EKNFTKLAKYALAFVMDEADKCKHFEDGLRTEIR 184
           E+ +T+L++YA   V  E+D+C+ FE GLR EIR
Sbjct: 62  ERKYTELSRYAEMIVASESDRCRRFERGLRFEIR 95

[Close]
BLAST of CsaV3_5G014550 vs. TrEMBL
Match: tr|A0A1S4DV40|A0A1S4DV40_CUCME (uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.9e-13
Identity = 58/190 (30.53%), Postives = 85/190 (44.74%), Query Frame = 0 

Query: 49  ESDEMSSNPHHPIGQNTEESV-FDLFAQRFGDHFISIPSNVDKRFDIERLKALKATTFEG 108
           +S+  SS P    GQN   S  F   AQ       + PS++DK + IE+LK L AT F+G
Sbjct: 23  QSERGSSTPR---GQNEVGSERFARSAQEISRPERARPSDLDKMYGIEQLKKLGATVFQG 82

Query: 109 TTNSADAE---------------------------------------------------- 168
           +T+ ADAE                                                    
Sbjct: 83  STDPADAEVWLNMLEKCFDVMSCPQEQKVRLATFLLQKEAEGWLKSIIASRNDARTLYWQ 142

Query: 169 --KKALQNKFYPLSFCDAKRNGFVNLVQGDTTIVEYEKNFTKLAKYALAFVMDEADKCKH 184
             +   + K+YP ++C+AKR+ F+ L QG   + EYE+ +T+L++Y    V  E+D+C+ 
Sbjct: 143 TFRGIFEEKYYPTTYCEAKRDEFMELKQGSLLVAEYERKYTELSRYVEMIVASESDRCRR 202

[Close]
BLAST of CsaV3_5G014550 vs. TrEMBL
Match: tr|A0A1S3BJ07|A0A1S3BJ07_CUCME (uncharacterized protein LOC103490604 OS=Cucumis melo OX=3656 GN=LOC103490604 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.6e-12
Identity = 59/190 (31.05%), Postives = 83/190 (43.68%), Query Frame = 0 

Query: 49  ESDEMSSNPHHPIGQNTEESV-FDLFAQRFGDHFISIPSNVDKRFDIERLKALKATTFEG 108
           +S+  SS P    GQN   S  F   AQ  G      PS+ +K + IERLK L AT FEG
Sbjct: 23  QSERGSSTPR---GQNEAGSERFARSAQEIGRPERVGPSDPEKMYGIERLKKLGATVFEG 82

Query: 109 TTNSADAE---------------------------------------------------- 168
           +T+ A+AE                                                    
Sbjct: 83  STDPANAEVWLNMLEKCFDVMNCPQKRKVRLTTFLLQKEAEGWWKSIIARRNDARTLDWQ 142

Query: 169 --KKALQNKFYPLSFCDAKRNGFVNLVQGDTTIVEYEKNFTKLAKYALAFVMDEADKCKH 184
             +   + K+YP ++C+AKR+ F  L QG  ++ EYE+ +T+L++Y    V  E+D+C  
Sbjct: 143 TFRGIFEEKYYPTTYCEAKRDEFQELKQGSLSVAEYERKYTELSRYVEVIVAYESDRCCR 202

[Close]
BLAST of CsaV3_5G014550 vs. TrEMBL
Match: tr|A0A1S4E0X6|A0A1S4E0X6_CUCME (uncharacterized protein LOC107991320 OS=Cucumis melo OX=3656 GN=LOC107991320 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 57/158 (36.08%), Postives = 80/158 (50.63%), Query Frame = 0 

Query: 49  ESDEMSSNPHHPIGQNTEESV-FDLFAQRFGDHFISIPSNVDKRFDIERLKALKATTFEG 108
           +S+  SS P    GQN   S  F   AQ  G    + PS+ +K + IERLK L+AT F+G
Sbjct: 23  QSERGSSTPR---GQNEAGSERFSRSAQEIGRPEKAGPSDPEKMYGIERLKKLEATVFDG 82

Query: 109 TTNSADAE----------------------KKALQNKFYPLSFCDAKRNGFVNLVQGDTT 168
           +T+ ADAE                      +   + K+YP ++C+AKR+ F+ L Q   +
Sbjct: 83  STDLADAEVWLNMLEKCFDLMSCPQERKTFRGIFEEKYYPTTYCEAKRDEFLELKQESLS 142

Query: 169 IVEYEKNFTKLAKYALAFVMDEADKCKHFEDGLRTEIR 184
           +VEYE+      KYA   V  E+D+C   E GLR E R
Sbjct: 143 VVEYER------KYAEMIVAFESDRCCRGERGLRFEKR 171

[Close]
BLAST of CsaV3_5G014550 vs. TrEMBL
Match: tr|A0A1S4E079|A0A1S4E079_CUCME (uncharacterized protein LOC107991239 OS=Cucumis melo OX=3656 GN=LOC107991239 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 46/146 (31.51%), Postives = 68/146 (46.58%), Query Frame = 0 

Query: 92  FDIERLKALKATTFEGTTNSADAE------------------------------------ 151
           + IERLK L+AT FEG+T+ ADAE                                    
Sbjct: 2   YGIERLKKLRATVFEGSTDPADAEVWLNMLEKCFDVMSCPQERKVRLATFLLQKEAEGWW 61

Query: 152 ------------------KKALQNKFYPLSFCDAKRNGFVNLVQGDTTIVEYEKNFTKLA 184
                             +   + K+YP ++C+AKR+ F+ L QG  ++VEYE+ +T+L+
Sbjct: 62  KSIIVKRNDACTLDWQTFRGIFEEKYYPTTYCEAKRDEFLELKQGSLSMVEYERKYTELS 121

The following BLAST results are available for this feature:
BLAST of CsaV3_5G014550 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464978.14.3e-1546.81PREDICTED: uncharacterized protein LOC103502718 [Cucumis melo][more]
XP_016899851.19.0e-1330.53PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo][more]
XP_017629016.12.0e-1243.90PREDICTED: uncharacterized protein LOC108471995 [Gossypium arboreum][more]
XP_008448403.11.3e-1131.05PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo][more]
XP_016901625.11.7e-1136.08PREDICTED: uncharacterized protein LOC107991320 [Cucumis melo][more]
BLAST of CsaV3_5G014550 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G014550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G014550 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CMU0|A0A1S3CMU0_CUCME2.9e-1546.81uncharacterized protein LOC103502718 OS=Cucumis melo OX=3656 GN=LOC103502718 PE=... [more]
tr|A0A1S4DV40|A0A1S4DV40_CUCME5.9e-1330.53uncharacterized protein LOC103487680 OS=Cucumis melo OX=3656 GN=LOC103487680 PE=... [more]
tr|A0A1S3BJ07|A0A1S3BJ07_CUCME8.6e-1231.05uncharacterized protein LOC103490604 OS=Cucumis melo OX=3656 GN=LOC103490604 PE=... [more]
tr|A0A1S4E0X6|A0A1S4E0X6_CUCME1.1e-1136.08uncharacterized protein LOC107991320 OS=Cucumis melo OX=3656 GN=LOC107991320 PE=... [more]
tr|A0A1S4E079|A0A1S4E079_CUCME1.9e-1131.51uncharacterized protein LOC107991239 OS=Cucumis melo OX=3656 GN=LOC107991239 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G014550.1CsaV3_5G014550.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 116..179
e-value: 2.6E-6
score: 27.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..62

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G014550Cucumber (Gy14) v2cgybcucB232
CsaV3_5G014550Cucumber (Gy14) v1cgycucB278
CsaV3_5G014550Cucurbita maxima (Rimu)cmacucB0873
CsaV3_5G014550Wild cucumber (PI 183967)cpicucB286
CsaV3_5G014550Melon (DHL92) v3.5.1cucmeB375
CsaV3_5G014550Melon (DHL92) v3.6.1cucmedB365