CsaV3_5G014450 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G014450
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 11434968 .. 11435326 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATTGTTCATCTCCATTTGAACAACGTCTCAAAATCTTGAGCTATCAGAAAGTAATCTTCACTTTTTAACTTTTCACGAAAAAACACTCTTTTAGGTTTGAAAATTAAGTAAACCTTGTGTCTTGAATGTTGAAGAGAACTCAAATATATAACGAAGGCAAATTTTGGGCTGCAATAACTTTCCAAAAATATGAATTGTGTAAAATAGGAAAATTGGCGCGACGTCCTAAGAAAGCGTCGCGACGCTATGACTGTCGAAGTGTTATGCTACGCCTCGATAAAATGCAATGGTGCTTGCTGCTTTGCACAAATTATGAGCTCTCGGGAAAATCAGCCAAGCAGACGTTGACCTAG

mRNA sequence

ATGGGAATTGTTCATCTCCATTTGAACAACAGAACTCAAATATATAACGAAGGCAAATTTTGGGCTGCAATAACTTTCCAAAAATATGAATTGTGTAAAATAGGAAAATTGGCGCGACGTCCTAAGAAAGCGTCGCGACGCTATGACTGTCGAAGTGTTATGCTACGCCTCGATAAAATGCAATGGTGCTTGCTGCTTTGCACAAATTATGAGCTCTCGGGAAAATCAGCCAAGCAGACGTTGACCTAG

Coding sequence (CDS)

ATGGGAATTGTTCATCTCCATTTGAACAACAGAACTCAAATATATAACGAAGGCAAATTTTGGGCTGCAATAACTTTCCAAAAATATGAATTGTGTAAAATAGGAAAATTGGCGCGACGTCCTAAGAAAGCGTCGCGACGCTATGACTGTCGAAGTGTTATGCTACGCCTCGATAAAATGCAATGGTGCTTGCTGCTTTGCACAAATTATGAGCTCTCGGGAAAATCAGCCAAGCAGACGTTGACCTAG

Protein sequence

MGIVHLHLNNRTQIYNEGKFWAAITFQKYELCKIGKLARRPKKASRRYDCRSVMLRLDKMQWCLLLCTNYELSGKSAKQTLT
Homology
[Close]
BLAST of CsaV3_5G014450 vs. NCBI nr
Match: KGN49606.1 (hypothetical protein Csa_5G022370 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 2.0e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MGIVHLHLNNRTQIYNEGKFWAAITFQKYELCKIGKLARRPKKASRRYDCRSVMLRLDKM 60
          MGIVHLHLNNRTQIYNEGKFWAAITFQKYELCKIGKLARRPKKASRRYDCRSVMLRLDKM
Sbjct: 1  MGIVHLHLNNRTQIYNEGKFWAAITFQKYELCKIGKLARRPKKASRRYDCRSVMLRLDKM 60

Query: 61 QWCLLLCTNYELSGKSAKQTLT 83
          QWCLLLCTNYELSGKSAKQTLT
Sbjct: 61 QWCLLLCTNYELSGKSAKQTLT 82

[Close]
BLAST of CsaV3_5G014450 vs. TrEMBL
Match: tr|A0A0A0KPH2|A0A0A0KPH2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G022370 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MGIVHLHLNNRTQIYNEGKFWAAITFQKYELCKIGKLARRPKKASRRYDCRSVMLRLDKM 60
          MGIVHLHLNNRTQIYNEGKFWAAITFQKYELCKIGKLARRPKKASRRYDCRSVMLRLDKM
Sbjct: 1  MGIVHLHLNNRTQIYNEGKFWAAITFQKYELCKIGKLARRPKKASRRYDCRSVMLRLDKM 60

Query: 61 QWCLLLCTNYELSGKSAKQTLT 83
          QWCLLLCTNYELSGKSAKQTLT
Sbjct: 61 QWCLLLCTNYELSGKSAKQTLT 82

The following BLAST results are available for this feature:
BLAST of CsaV3_5G014450 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49606.12.0e-40100.00hypothetical protein Csa_5G022370 [Cucumis sativus][more]
BLAST of CsaV3_5G014450 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G014450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G014450 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KPH2|A0A0A0KPH2_CUCSA1.3e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G022370 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G014450.1CsaV3_5G014450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G014450Wax gourdcucwgoB517
CsaV3_5G014450Silver-seed gourdcarcucB1014
CsaV3_5G014450Silver-seed gourdcarcucB0705
CsaV3_5G014450Cucumber (Gy14) v2cgybcucB232
CsaV3_5G014450Cucurbita maxima (Rimu)cmacucB0870
CsaV3_5G014450Cucurbita maxima (Rimu)cmacucB0873
CsaV3_5G014450Cucurbita moschata (Rifu)cmocucB0857
CsaV3_5G014450Cucurbita moschata (Rifu)cmocucB0859
CsaV3_5G014450Cucurbita pepo (Zucchini)cpecucB0528
CsaV3_5G014450Cucurbita pepo (Zucchini)cpecucB0529
CsaV3_5G014450Wild cucumber (PI 183967)cpicucB286
CsaV3_5G014450Bottle gourd (USVL1VR-Ls)cuclsiB392
CsaV3_5G014450Melon (DHL92) v3.5.1cucmeB419
CsaV3_5G014450Melon (DHL92) v3.6.1cucmedB412
CsaV3_5G014450Watermelon (Charleston Gray)cucwcgB428
CsaV3_5G014450Watermelon (97103) v1cucwmB411
CsaV3_5G014450Watermelon (97103) v2cucwmbB414