CsaV3_5G014280 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G014280
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 11305374 .. 11305699 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTTCAAAGACTTATGCCATTATTGTTAGTTCTCTTGTTGCTAACCTCCTTCAACGTGTCGATGGCAAAGAAAAAAAAGGCAAAAAGCAAAACCGAGAAGCCAGATTTACCAGATCCCAACAATCCTATTGTCTCGTTCGAAAAGTTTAGAGTTGAAATTCACAATGACTTGAATATGTACTTGTTAGATAGTCGTTGCTACTCAAAAGACGACAATTTCGGGTTGCACGTGTTGTTCCCAGATGAACAACAAAATTGGTCTTTTAAAGGGAATTGGGATGACACAACGACTTTTCATTGTAGGTTGGAGTGGGAAATTGG

mRNA sequence

ATGGCGTTTCAAAGACTTATGCCATTATTGTTAGTTCTCTTGTTGCTAACCTCCTTCAACGTGTCGATGGCAAAGAAAAAAAAGGCAAAAAGCAAAACCGAGAAGCCAGATTTACCAGATCCCAACAATCCTATTGTCTCGTTCGAAAAGTTTAGAGTTGAAATTCACAATGACTTGAATATGTACTTGTTAGATAGTCGTTGCTACTCAAAAGACGACAATTTCGGGTTGCACGTGTTGTTCCCAGATGAACAACAAAATTGGTCTTTTAAAGGGAATTGGGATGACACAACGACTTTTCATTGTAGGTTGGAGTGGGAAATTGG

Coding sequence (CDS)

ATGGCGTTTCAAAGACTTATGCCATTATTGTTAGTTCTCTTGTTGCTAACCTCCTTCAACGTGTCGATGGCAAAGAAAAAAAAGGCAAAAAGCAAAACCGAGAAGCCAGATTTACCAGATCCCAACAATCCTATTGTCTCGTTCGAAAAGTTTAGAGTTGAAATTCACAATGACTTGAATATGTACTTGTTAGATAGTCGTTGCTACTCAAAAGACGACAATTTCGGGTTGCACGTGTTGTTCCCAGATGAACAACAAAATTGGTCTTTTAAAGGGAATTGGGATGACACAACGACTTTTCATTGTAGGTTGGAGTGGGAAATTGG

Protein sequence

MAFQRLMPLLLVLLLLTSFNVSMAKKKKAKSKTEKPDLPDPNNPIVSFEKFRVEIHNDLNMYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEIX
Homology
[Close]
BLAST of CsaV3_5G014280 vs. NCBI nr
Match: KGN49595.1 (hypothetical protein Csa_5G017790 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 1.4e-41
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MAFQRLMPLLXXXXXXXXXXXXXXXXXXXXXXXXKPDLPDPNNPIVSFEKFRVEIHNDLN 60
           MAFQRLMPLLXXXXXXXXXXXXXXXXXXXXXXXXKPDLPDPNNPIVSFEKFRVEIHNDLN
Sbjct: 1   MAFQRLMPLLXXXXXXXXXXXXXXXXXXXXXXXXKPDLPDPNNPIVSFEKFRVEIHNDLN 60

Query: 61  MYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEI 109
           MYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEI
Sbjct: 61  MYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEI 108

[Close]
BLAST of CsaV3_5G014280 vs. NCBI nr
Match: KGN49594.1 (hypothetical protein Csa_5G016040 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 9.6e-27
Identity = 53/73 (72.60%), Postives = 63/73 (86.30%), Query Frame = 0 

Query: 36  PDLPDPNNPIVSFEKFRVEIHNDLNMYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWD 95
           P L  PNNP+V FE+F VEIHNDL M++LDS CYSKDD+ GLH+LFPDE+Q+WSFKGNW 
Sbjct: 13  PKLSVPNNPVVMFERFTVEIHNDLRMFILDSHCYSKDDDLGLHILFPDEKQDWSFKGNWI 72

Query: 96  DTTTFHCRLEWEI 109
            TT+FHCRLEWE+
Sbjct: 73  ATTSFHCRLEWEV 85

[Close]
BLAST of CsaV3_5G014280 vs. NCBI nr
Match: XP_022933678.1 (S-protein homolog 2-like [Cucurbita moschata])

HSP 1 Score: 113.2 bits (282), Expect = 5.5e-22
Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 0 

Query: 35  KPDLPDPNNPIVSFEKFRVEIHNDLNMYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNW 94
           KP    PNNP  +FE+F VEIHNDL M++LD+ C SKDD+ GLH+LFPDE+Q+WSF  NW
Sbjct: 39  KPKFLKPNNPNPAFERFTVEIHNDLRMFILDAHCSSKDDDLGLHILFPDEEQDWSFHDNW 98

Query: 95  DDTTTFHCRLEWE 108
             TT FHCRLEW+
Sbjct: 99  LGTTEFHCRLEWQ 111

[Close]
BLAST of CsaV3_5G014280 vs. NCBI nr
Match: XP_008453055.1 (PREDICTED: uncharacterized protein LOC103493877 [Cucumis melo])

HSP 1 Score: 112.8 bits (281), Expect = 7.1e-22
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 36  PDLPDPNNPIVSFEKFRVEIHNDLNMYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWD 95
           P+LP P+ P+V+F KF + I+N+L MYLLDS CYSKDD+ G  VL+P+++Q+WSF+GNW 
Sbjct: 15  PELPKPHEPLVTFHKFNIRIYNELQMYLLDSHCYSKDDDLGTKVLYPNDEQSWSFRGNWL 74

Query: 96  DTTTFHCRLEWE 108
            TT FHC+LEWE
Sbjct: 75  GTTNFHCKLEWE 86

[Close]
BLAST of CsaV3_5G014280 vs. NCBI nr
Match: XP_023546843.1 (S-protein homolog 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.1 bits (266), Expect = 3.9e-20
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 0 

Query: 36  PDLPDPNNPIVSFEKFRVEIHNDLNMYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWD 95
           P+ PDPN P ++  KF V I N L MYLLDS C SKDD+ G+HV++PD++Q+WSF+GNW 
Sbjct: 39  PEQPDPNQPAIALRKFDVHIRNGLRMYLLDSHCCSKDDDLGVHVVYPDDEQSWSFRGNWL 98

Query: 96  DTTTFHCRLEW 107
            +T FHC+LEW
Sbjct: 99  GSTNFHCKLEW 109

[Close]
BLAST of CsaV3_5G014280 vs. TrEMBL
Match: tr|A0A0A0KIQ4|A0A0A0KIQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G017790 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 9.1e-42
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   MAFQRLMPLLXXXXXXXXXXXXXXXXXXXXXXXXKPDLPDPNNPIVSFEKFRVEIHNDLN 60
           MAFQRLMPLLXXXXXXXXXXXXXXXXXXXXXXXXKPDLPDPNNPIVSFEKFRVEIHNDLN
Sbjct: 1   MAFQRLMPLLXXXXXXXXXXXXXXXXXXXXXXXXKPDLPDPNNPIVSFEKFRVEIHNDLN 60

Query: 61  MYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEI 109
           MYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEI
Sbjct: 61  MYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRLEWEI 108

[Close]
BLAST of CsaV3_5G014280 vs. TrEMBL
Match: tr|A0A0A0KL79|A0A0A0KL79_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G016040 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.4e-27
Identity = 53/73 (72.60%), Postives = 63/73 (86.30%), Query Frame = 0 

Query: 36  PDLPDPNNPIVSFEKFRVEIHNDLNMYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWD 95
           P L  PNNP+V FE+F VEIHNDL M++LDS CYSKDD+ GLH+LFPDE+Q+WSFKGNW 
Sbjct: 13  PKLSVPNNPVVMFERFTVEIHNDLRMFILDSHCYSKDDDLGLHILFPDEKQDWSFKGNWI 72

Query: 96  DTTTFHCRLEWEI 109
            TT+FHCRLEWE+
Sbjct: 73  ATTSFHCRLEWEV 85

[Close]
BLAST of CsaV3_5G014280 vs. TrEMBL
Match: tr|A0A1S3BUQ9|A0A1S3BUQ9_CUCME (uncharacterized protein LOC103493877 OS=Cucumis melo OX=3656 GN=LOC103493877 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.7e-22
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 0 

Query: 36  PDLPDPNNPIVSFEKFRVEIHNDLNMYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWD 95
           P+LP P+ P+V+F KF + I+N+L MYLLDS CYSKDD+ G  VL+P+++Q+WSF+GNW 
Sbjct: 15  PELPKPHEPLVTFHKFNIRIYNELQMYLLDSHCYSKDDDLGTKVLYPNDEQSWSFRGNWL 74

Query: 96  DTTTFHCRLEWE 108
            TT FHC+LEWE
Sbjct: 75  GTTNFHCKLEWE 86

[Close]
BLAST of CsaV3_5G014280 vs. TrEMBL
Match: tr|A0A1S3BVC0|A0A1S3BVC0_CUCME (uncharacterized protein LOC103493879 OS=Cucumis melo OX=3656 GN=LOC103493879 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.8e-17
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 0 

Query: 41  PNNP-IVSFEKFRVEIHNDLNMYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTT 100
           P  P I+    ++V+IHNDL MYLLDS C+SKD++ GLH+LFP EQQ+WSF+ N  +TT 
Sbjct: 10  PQKPSIIQLRHYQVKIHNDLEMYLLDSHCFSKDNDLGLHILFPGEQQDWSFEDNIFETTK 69

Query: 101 FHCRLEWE 108
           F CRLEWE
Sbjct: 70  FRCRLEWE 77

[Close]
BLAST of CsaV3_5G014280 vs. TrEMBL
Match: tr|A0A0A0KSN2|A0A0A0KSN2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G538550 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.3e-15
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 0 

Query: 45  IVSFEKFRVEIHNDLNMYLLDSRCYSKDDNFGLHVLFPDEQQNWSFKGNWDDTTTFHCRL 104
           I+    +++EIHNDL MYLLDS C+SKD++ GLH+LFP E Q+WSF+ N  +TT F C L
Sbjct: 34  IIQLHHYQIEIHNDLEMYLLDSHCFSKDNDLGLHILFPGELQDWSFQDNDFETTKFRCIL 93

Query: 105 EWE 108
           EWE
Sbjct: 94  EWE 96

The following BLAST results are available for this feature:
BLAST of CsaV3_5G014280 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49595.11.4e-41100.00hypothetical protein Csa_5G017790 [Cucumis sativus][more]
KGN49594.19.6e-2772.60hypothetical protein Csa_5G016040 [Cucumis sativus][more]
XP_022933678.15.5e-2264.38S-protein homolog 2-like [Cucurbita moschata][more]
XP_008453055.17.1e-2261.11PREDICTED: uncharacterized protein LOC103493877 [Cucumis melo][more]
XP_023546843.13.9e-2059.15S-protein homolog 1-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_5G014280 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G014280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G014280 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KIQ4|A0A0A0KIQ4_CUCSA9.1e-42100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G017790 PE=4 SV=1[more]
tr|A0A0A0KL79|A0A0A0KL79_CUCSA6.4e-2772.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G016040 PE=4 SV=1[more]
tr|A0A1S3BUQ9|A0A1S3BUQ9_CUCME4.7e-2261.11uncharacterized protein LOC103493877 OS=Cucumis melo OX=3656 GN=LOC103493877 PE=... [more]
tr|A0A1S3BVC0|A0A1S3BVC0_CUCME7.8e-1760.29uncharacterized protein LOC103493879 OS=Cucumis melo OX=3656 GN=LOC103493879 PE=... [more]
tr|A0A0A0KSN2|A0A0A0KSN2_CUCSA3.3e-1558.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G538550 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010264Self-incomp_S1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G014280.1CsaV3_5G014280.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF05938Self-incomp_S1coord: 52..107
e-value: 6.4E-12
score: 45.8
NoneNo IPR availablePANTHERPTHR31232:SF5PLANT SELF-INCOMPATIBILITY PROTEIN S1 FAMILY-RELATEDcoord: 9..107
IPR010264Plant self-incompatibility S1PANTHERPTHR31232FAMILY NOT NAMEDcoord: 9..107

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G014280Cucumber (Gy14) v2cgybcucB232
CsaV3_5G014280Cucurbita maxima (Rimu)cmacucB0870
CsaV3_5G014280Cucurbita pepo (Zucchini)cpecucB0529
CsaV3_5G014280Wild cucumber (PI 183967)cpicucB286
CsaV3_5G014280Melon (DHL92) v3.6.1cucmedB412
CsaV3_5G014280Silver-seed gourdcarcucB0705