CsaV3_5G014230 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G014230
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 11220744 .. 11221000 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGCCATGGCTCTCGGATTCTGGAAAAATCGGCGGGTGGAGGCGCACACGGCTTGCGAACGGCTCGCAAAGGGCGGAGGACACTCACGGCTCGCGCACGACTCGGACTGAAGAAGAAGGCAGACGCGCGCGTTCGGCTGGGTCGTGATGGGCAGCGTTCGGACAAAGCAGTGGCGAACGCGGCGGAGAAGAAAACGATGCGGCGGATGCTTGCAAGAACGGCCAAACGAAGACGACGGCTTGCGACGACAAGTTGA

mRNA sequence

AGCCATGGCTCTCGGATTCTGGAAAAATCGGCGGGTGGAGGCGCACACGGCTTGCGAACGGCTCGCAAAGGGCGGAGGACACTCACGGCTCGCGCACGACTCGGACTGAAGAAGAAGGCAGACGCGCGCGTTCGGCTGGGTCGTGATGGGCAGCGTTCGGACAAAGCAGTGGCGAACGCGGCGGAGAAGAAAACGATGCGGCGGATGCTTGCAAGAACGGCCAAACGAAGACGACGGCTTGCGACGACAAGTTG

Coding sequence (CDS)

AGCCATGGCTCTCGGATTCTGGAAAAATCGGCGGGTGGAGGCGCACACGGCTTGCGAACGGCTCGCAAAGGGCGGAGGACACTCACGGCTCGCGCACGACTCGGACTGAAGAAGAAGGCAGACGCGCGCGTTCGGCTGGGTCGTGATGGGCAGCGTTCGGACAAAGCAGTGGCGAACGCGGCGGAGAAGAAAACGATGCGGCGGATGCTTGCAAGAACGGCCAAACGAAGACGACGGCTTGCGACGACAAGTTG

Protein sequence

SHGSRILEKSAGGGAHGLRTARKGRRTLTARARLGLKKKADARVRLGRDGQRSDKAVANAAEKKTMRRMLARTAKRRRRLATTSX
Homology
[Close]
BLAST of CsaV3_5G014230 vs. NCBI nr
Match: KGN49591.1 (hypothetical protein Csa_5G014280 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 2.0e-32
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1   SHGSRILEKSAGGGAHGLRTARKGRRTLTARARLGLKKKADARVRLGRDGQRSDKAVANA 60
           SHGSRILEKSAGGGAHGLRTARKGRRTLTARARLGLKKKADARVRLGRDGQRSDKAVANA
Sbjct: 96  SHGSRILEKSAGGGAHGLRTARKGRRTLTARARLGLKKKADARVRLGRDGQRSDKAVANA 155

Query: 61  AEKKTMRRMLARTAKRRRRLATTS 85
           AEKKTMRRMLARTAKRRRRLATTS
Sbjct: 156 AEKKTMRRMLARTAKRRRRLATTS 179

[Close]
BLAST of CsaV3_5G014230 vs. TrEMBL
Match: tr|A0A0A0KPG6|A0A0A0KPG6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G014280 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-32
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1   SHGSRILEKSAGGGAHGLRTARKGRRTLTARARLGLKKKADARVRLGRDGQRSDKAVANA 60
           SHGSRILEKSAGGGAHGLRTARKGRRTLTARARLGLKKKADARVRLGRDGQRSDKAVANA
Sbjct: 96  SHGSRILEKSAGGGAHGLRTARKGRRTLTARARLGLKKKADARVRLGRDGQRSDKAVANA 155

Query: 61  AEKKTMRRMLARTAKRRRRLATTS 85
           AEKKTMRRMLARTAKRRRRLATTS
Sbjct: 156 AEKKTMRRMLARTAKRRRRLATTS 179

The following BLAST results are available for this feature:
BLAST of CsaV3_5G014230 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49591.12.0e-32100.00hypothetical protein Csa_5G014280 [Cucumis sativus][more]
BLAST of CsaV3_5G014230 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G014230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G014230 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KPG6|A0A0A0KPG6_CUCSA1.3e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G014280 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G014230.1CsaV3_5G014230.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..33
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G014230Silver-seed gourdcarcucB0705
CsaV3_5G014230Cucumber (Gy14) v2cgybcucB232
CsaV3_5G014230Cucumber (Gy14) v1cgycucB511
CsaV3_5G014230Wild cucumber (PI 183967)cpicucB286
CsaV3_5G014230Melon (DHL92) v3.6.1cucmedB368