CsaV3_5G013290 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G013290
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	chr5 : 9823765 .. 9825228 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGCAATTCCAAGGAGTGGTGGGTAGACACTGGGGCTACTCATCATATTTGTGCCAACAAGGATATGTTCACATCATATGTGCCAATTTCTAGTGGAGAACAACTATTTATAGGTAACTTCTCTACTTCAAAGGTTAAGGGACAAGACAAAGTGATTCTTAAGATGACCTTTGGCAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACATTCGCAAGAACTTAGTTTCTGGTTCATTGCTTAGTAAGAATGGCTTTAAGTTGGTACTTGTATCTGATAAGTTTGAACTTTTCAAGAATGAGATGTACATTGAAAATGGTTATTTGAGCGATGATCTATTTAAATTAAATGTACTCACAGTTGTACTCAAAAGTATTATTAATAACGTATTATTAATAAAGTATCTACTTTTGTTTATATTGTTGAGTCATTTGTTTGGCATGGCAGACTAGGACATGTTTATTTTAATTCTTTGCGAAGGCTAATTAATATGAACTTGATTCCAAAATTCACTTTTGACACAAATCATAGATGTGAGGTGTGTGTGGAATAAAAAATGACTAAAGCACTTTTTCATTCAACTCAGAGATTTACCAAGCCTTTAGAGTTAATTCATAGTGATATTTGTGACTTGAAATTGTGCAAACTAAAGGTGGAAAAAAGTACTTTATTACTTTTATCGATGATAGCACAAGATATTGTTATGTTTATCTGCTGAAAAGCAAAGATGAGGCAATTGAAGTGTTTAAGCTTTATAAAAAAGAGGTTAAAAATCAACTTAGCACAAACATTAAGGCAATAAGAAGTGATCGAGGTGGTGAATATGGTCCTCCTTTTGAACAATTTTGTTCAGAACATGACATTATTCACCAAACTACTACTCCTTACTCACCTCAATCCAATGGAATTAGTGAATGAAAAAAGCGAACACTTAAGGAAATGATGAACGCAATGCTTATAAGTTCAGGTTTACCCCAAAATTTGTGGGGAGAAGCTTTGTTGACAACAAATTATTTATGAAACAGAATTCCTCATAAGAAGTCACAAAATATTCCTTATAAAAAGTGGAAAGGAAGAAAACCTTCATATAAGTTCTTAAAAGTGTGGGGGTGCCTAGCAAAGGTTGTCGTGCCTAAATCTAAAATGGTTAAAATCGGACAAAAAACTGTTGATTGCATATTCATTGGTTATGCTAGTAACAGTTGTGCATATCGATTTATAGTTCATAAATAAGATATTTCAGATATACATGCTGATAAAATCATGGAATCAAGGAATGCAACATTCTTTGAGAATGTTTTTCCTCATAAAATGTCTTGTGAAGAAGGTTACAAAAACGTTCGTTTGATGCTATAACAAGCGAATCTCATAATAGATCAAATGTTGAGTTAATGAAGGATGAGGAACTCAGACGAAGTAAAAGGATGAGGAACTTAGACGAAGTAAAAGGATGA

mRNA sequence

ATGGTGAGCAATTCCAAGGAGTGGTGGGTAGACACTGGGGCTACTCATCATATTTGTGCCAACAAGGATATGTTCACATCATATGTGCCAATTTCTAGTGGAGAACAACTATTTATAGGTAACTTCTCTACTTCAAAGGTTAAGGGACAAGACAAAGTGATTCTTAAGATGACCTTTGGCAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACATTCGCAAGAACTTAGTTTCTGGTTCATTGCTTAGTAAGAATGGCTTTAAGTTGGTACTTGTATCTGATAAGTTTGAACTTTTCAAGAATGAGATAAGGTTACAAAAACGTTCGTTTGATGCTATAACAAGCGAATCTCATAATAGATCAAATGTTGAGTTAATGAAGGATGAGGAACTCAGACGAAGTAAAAGGATGAGGAACTTAGACGAAGTAAAAGGATGA

Coding sequence (CDS)

ATGGTGAGCAATTCCAAGGAGTGGTGGGTAGACACTGGGGCTACTCATCATATTTGTGCCAACAAGGATATGTTCACATCATATGTGCCAATTTCTAGTGGAGAACAACTATTTATAGGTAACTTCTCTACTTCAAAGGTTAAGGGACAAGACAAAGTGATTCTTAAGATGACCTTTGGCAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACATTCGCAAGAACTTAGTTTCTGGTTCATTGCTTAGTAAGAATGGCTTTAAGTTGGTACTTGTATCTGATAAGTTTGAACTTTTCAAGAATGAGATAAGGTTACAAAAACGTTCGTTTGATGCTATAACAAGCGAATCTCATAATAGATCAAATGTTGAGTTAATGAAGGATGAGGAACTCAGACGAAGTAAAAGGATGAGGAACTTAGACGAAGTAAAAGGATGA

Protein sequence

MVSNSKEWWVDTGATHHICANKDMFTSYVPISSGEQLFIGNFSTSKVKGQDKVILKMTFGKELTLNNVLHVPDIRKNLVSGSLLSKNGFKLVLVSDKFELFKNEIRLQKRSFDAITSESHNRSNVELMKDEELRRSKRMRNLDEVKG

Homology

[Close]

BLAST of CsaV3_5G013290 vs. NCBI nr
Match: CAN66576.1 (hypothetical protein VITISV_016964 [Vitis vinifera])

HSP 1 Score: 159.5 bits (402), Expect = 9.0e-36
Identity = 77/106 (72.64%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 4   NSKEWWVDTGATHHICANKDMFTSYVPISSGEQLFIGNFSTSKVKGQDKVILKMTFGKEL 63
           N+KEWWVDTGAT HIC+NK MF++Y P+   E+LF+GN S+SK++G+ KVILKMT GKEL
Sbjct: 459 NTKEWWVDTGATRHICSNKWMFSTYKPVEQNEELFMGNSSSSKIEGRGKVILKMTSGKEL 518

Query: 64  TLNNVLHVPDIRKNLVSGSLLSKNGFKLVLVSDKFELFKNEIRLQK 110
           TLN+VLHVPDI KNLVSGSLLSKNGFKLV VSDKF L KNE+ + K
Sbjct: 519 TLNDVLHVPDICKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGK 564

[Close]

BLAST of CsaV3_5G013290 vs. NCBI nr
Match: CAN82978.1 (hypothetical protein VITISV_023328 [Vitis vinifera])

HSP 1 Score: 158.7 bits (400), Expect = 1.5e-35
Identity = 78/109 (71.56%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MVSNSKEWWVDTGATHHICANKDMFTSYVPISSGEQLFIGNFSTSKVKGQDKVILKMTFG 60
           +V N+KEWWVDTGAT HIC+NK MF++Y P+   E+LF+G  S+SKV+G+ KVILKMT G
Sbjct: 230 IVGNTKEWWVDTGATRHICSNKWMFSTYKPVEQNEELFMGYSSSSKVEGRGKVILKMTSG 289

Query: 61  KELTLNNVLHVPDIRKNLVSGSLLSKNGFKLVLVSDKFELFKNEIRLQK 110
           KELTLN+VLHVPDIRKNLVS SLLSKNGFKLV VSDKF L KNE+ + K
Sbjct: 290 KELTLNDVLHVPDIRKNLVSRSLLSKNGFKLVFVSDKFVLTKNEMFVGK 338

[Close]

BLAST of CsaV3_5G013290 vs. NCBI nr
Match: PON81118.1 (Zinc finger, CCHC-type [Trema orientalis])

HSP 1 Score: 148.3 bits (373), Expect = 2.1e-32
Identity = 67/107 (62.62%), Postives = 91/107 (85.05%), Query Frame = 0


Query: 3   SNSKEWWVDTGATHHICANKDMFTSYVPISSGEQLFIGNFSTSKVKGQDKVILKMTFGKE 62
           SN +EWW+DTGA+ H+C++K +FT++ P+ +GE+LF+GN STS+V+G  KV+LKMT GKE
Sbjct: 227 SNPREWWIDTGASRHVCSDKGLFTTFEPVENGEKLFMGNSSTSEVQGLGKVVLKMTSGKE 286

Query: 63  LTLNNVLHVPDIRKNLVSGSLLSKNGFKLVLVSDKFELFKNEIRLQK 110
           LTLNNV++VPDIRKNLVSGSLL+K+GF++V  SDKF L KN + + K
Sbjct: 287 LTLNNVMYVPDIRKNLVSGSLLNKHGFRMVFESDKFVLTKNGLFVGK 333

[Close]

BLAST of CsaV3_5G013290 vs. NCBI nr
Match: XP_015389484.1 (uncharacterized protein LOC107178620 [Citrus sinensis])

HSP 1 Score: 146.7 bits (369), Expect = 6.1e-32
Identity = 68/111 (61.26%), Postives = 92/111 (82.88%), Query Frame = 0


Query: 3   SNSKEWWVDTGATHHICANKDMFTSYVPISSGEQLFIGNFSTSKVKGQDKVILKMTFGKE 62
           SN +EWW+DTGAT H+C++K +FTS+  +S+GE+LF+GN +TS+++GQ KVILKMT GKE
Sbjct: 165 SNPREWWIDTGATRHVCSDKGLFTSFEAVSNGEKLFMGNSATSEIEGQGKVILKMTSGKE 224

Query: 63  LTLNNVLHVPDIRKNLVSGSLLSKNGFKLVLVSDKFELFKNEIRLQKRSFD 114
           LTLNNVL+VP+IRKNLVSGSLL+K+GF++V  SD+  L KN + + K   D
Sbjct: 225 LTLNNVLYVPEIRKNLVSGSLLNKHGFRMVFESDRVVLSKNGMYVGKGYVD 275

[Close]

BLAST of CsaV3_5G013290 vs. NCBI nr
Match: CAN66637.1 (hypothetical protein VITISV_011340 [Vitis vinifera])

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 66/107 (61.68%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 3   SNSKEWWVDTGATHHICANKDMFTSYVPISSGEQLFIGNFSTSKVKGQDKVILKMTFGKE 62
           SN KEWW+DTGAT H+C++K MF+++ PI +GE++F+GN +TS++KGQ KVILKMT GKE
Sbjct: 331 SNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKE 390

Query: 63  LTLNNVLHVPDIRKNLVSGSLLSKNGFKLVLVSDKFELFKNEIRLQK 110
           LTL NVL+VP+IRKNLVSGSLL+ +GF+LV  S+K  L K+ + + K
Sbjct: 391 LTLTNVLYVPEIRKNLVSGSLLNNHGFRLVFXSNKVVLSKSGMYVGK 437

[Close]

BLAST of CsaV3_5G013290 vs. Swiss-Prot
Match: sp|P10978|POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 43/125 (34.40%), Postives = 67/125 (53.60%), Query Frame = 0


Query: 7   EWWVDTGATHHICANKDMFTSYVPISSGEQLFIGNFSTSKVKGQDKVILKMTFGKELTLN 66
           EW VDT A+HH    +D+F  YV    G  + +GN S SK+ G   + +K   G  L L 
Sbjct: 293 EWVVDTAASHHATPVRDLFCRYVAGDFG-TVKMGNTSYSKIAGIGDICIKTNVGCTLVLK 352

Query: 67  NVLHVPDIRKNLVSGSLLSKNGFKLVLVSDKFELFKNEIRLQKRSFDAITSESHNRSNVE 126
           +V HVPD+R NL+SG  L ++G++    + K+ L K  + + K     +   +  R+N E
Sbjct: 353 DVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAK----GVARGTLYRTNAE 412

Query: 127 LMKDE 132
           + + E
Sbjct: 413 ICQGE 412

[Close]

BLAST of CsaV3_5G013290 vs. Swiss-Prot
Match: sp|Q94HW2|POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.6e-07
Identity = 30/98 (30.61%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 4   NSKEWWVDTGATHHICANKDMFTSYVPISSGEQLFIGNFSTSKVKGQDKVILKMTFGKEL 63
           +S  W +D+GATHHI ++ +  + + P + G+ + + + ST  +       L  T  + L
Sbjct: 327 SSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLS-TKSRPL 386

Query: 64  TLNNVLHVPDIRKNLVS-GSLLSKNGFKLVLVSDKFEL 101
            L+N+L+VP+I KNL+S   L + NG  +      F++
Sbjct: 387 NLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQV 423

[Close]

BLAST of CsaV3_5G013290 vs. Swiss-Prot
Match: sp|Q9ZT94|POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.6e-07
Identity = 28/77 (36.36%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 4   NSKEWWVDTGATHHICANKDMFTSYVPISSGEQLFIGNFSTSKVKGQDKVILKMTFGKEL 63
           N+  W +D+GATHHI ++ +  + + P + G+ + I + ST  +       L  T  + L
Sbjct: 306 NANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLP-TSSRSL 365

Query: 64  TLNNVLHVPDIRKNLVS 81
            LN VL+VP+I KNL+S
Sbjct: 366 DLNKVLYVPNIHKNLIS 381

[Close]

BLAST of CsaV3_5G013290 vs. TrEMBL
Match: tr|A5CBN2|A5CBN2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_016964 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.0e-36
Identity = 77/106 (72.64%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 4   NSKEWWVDTGATHHICANKDMFTSYVPISSGEQLFIGNFSTSKVKGQDKVILKMTFGKEL 63
           N+KEWWVDTGAT HIC+NK MF++Y P+   E+LF+GN S+SK++G+ KVILKMT GKEL
Sbjct: 459 NTKEWWVDTGATRHICSNKWMFSTYKPVEQNEELFMGNSSSSKIEGRGKVILKMTSGKEL 518

Query: 64  TLNNVLHVPDIRKNLVSGSLLSKNGFKLVLVSDKFELFKNEIRLQK 110
           TLN+VLHVPDI KNLVSGSLLSKNGFKLV VSDKF L KNE+ + K
Sbjct: 519 TLNDVLHVPDICKNLVSGSLLSKNGFKLVFVSDKFVLTKNEMFVGK 564

[Close]

BLAST of CsaV3_5G013290 vs. TrEMBL
Match: tr|A5B994|A5B994_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_023328 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.0e-35
Identity = 78/109 (71.56%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MVSNSKEWWVDTGATHHICANKDMFTSYVPISSGEQLFIGNFSTSKVKGQDKVILKMTFG 60
           +V N+KEWWVDTGAT HIC+NK MF++Y P+   E+LF+G  S+SKV+G+ KVILKMT G
Sbjct: 230 IVGNTKEWWVDTGATRHICSNKWMFSTYKPVEQNEELFMGYSSSSKVEGRGKVILKMTSG 289

Query: 61  KELTLNNVLHVPDIRKNLVSGSLLSKNGFKLVLVSDKFELFKNEIRLQK 110
           KELTLN+VLHVPDIRKNLVS SLLSKNGFKLV VSDKF L KNE+ + K
Sbjct: 290 KELTLNDVLHVPDIRKNLVSRSLLSKNGFKLVFVSDKFVLTKNEMFVGK 338

[Close]

BLAST of CsaV3_5G013290 vs. TrEMBL
Match: tr|A0A2N9FN92|A0A2N9FN92_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16505 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.6e-35
Identity = 76/109 (69.72%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MVSNSKEWWVDTGATHHICANKDMFTSYVPISSGEQLFIGNFSTSKVKGQDKVILKMTFG 60
           +V ++KEWWVDTGAT HIC++K MF++Y  +  GEQLF+GN ST++V+G+ KVILKMT G
Sbjct: 298 LVGDTKEWWVDTGATRHICSDKKMFSTYHSVEHGEQLFMGNSSTARVEGKGKVILKMTSG 357

Query: 61  KELTLNNVLHVPDIRKNLVSGSLLSKNGFKLVLVSDKFELFKNEIRLQK 110
           KELTLN+VLHVPDIRKNLVSGSLLSKNGFKLV  SDKF L K+ I + K
Sbjct: 358 KELTLNDVLHVPDIRKNLVSGSLLSKNGFKLVFESDKFILTKSGIYVGK 406

[Close]

BLAST of CsaV3_5G013290 vs. TrEMBL
Match: tr|A0A2N9H4X9|A0A2N9H4X9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34551 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.6e-35
Identity = 76/109 (69.72%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MVSNSKEWWVDTGATHHICANKDMFTSYVPISSGEQLFIGNFSTSKVKGQDKVILKMTFG 60
           +V ++KEWWVDTGAT HIC++K MF++Y  +  GEQLF+GN ST++V+G+ KVILKMT G
Sbjct: 320 LVGDTKEWWVDTGATRHICSDKKMFSTYHSVEHGEQLFMGNSSTARVEGKGKVILKMTSG 379

Query: 61  KELTLNNVLHVPDIRKNLVSGSLLSKNGFKLVLVSDKFELFKNEIRLQK 110
           KELTLN+VLHVPDIRKNLVSGSLLSKNGFKLV  SDKF L K+ I + K
Sbjct: 380 KELTLNDVLHVPDIRKNLVSGSLLSKNGFKLVFESDKFILTKSGIYVGK 428

[Close]

BLAST of CsaV3_5G013290 vs. TrEMBL
Match: tr|A0A2N9FDD9|A0A2N9FDD9_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16769 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.1e-34
Identity = 74/103 (71.84%), Postives = 90/103 (87.38%), Query Frame = 0


Query: 1   MVSNSKEWWVDTGATHHICANKDMFTSYVPISSGEQLFIGNFSTSKVKGQDKVILKMTFG 60
           +V ++KEWWVDTGAT HIC++K+MF++Y  +  GEQLF+GN ST++V+G+ KVILKMT G
Sbjct: 320 LVGDTKEWWVDTGATRHICSDKNMFSTYHSVEHGEQLFMGNSSTARVEGKGKVILKMTSG 379

Query: 61  KELTLNNVLHVPDIRKNLVSGSLLSKNGFKLVLVSDKFELFKN 104
           KELTLN+VLHVPDIRKNLVSGSLLSKNGFKLV  SDKF L K+
Sbjct: 380 KELTLNDVLHVPDIRKNLVSGSLLSKNGFKLVFESDKFILTKS 422

The following BLAST results are available for this feature:

BLAST of CsaV3_5G013290 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN66576.1	9.0e-36	72.64	hypothetical protein VITISV_016964 [Vitis vinifera]	[more]
CAN82978.1	1.5e-35	71.56	hypothetical protein VITISV_023328 [Vitis vinifera]	[more]
PON81118.1	2.1e-32	62.62	Zinc finger, CCHC-type [Trema orientalis]	[more]
XP_015389484.1	6.1e-32	61.26	uncharacterized protein LOC107178620 [Citrus sinensis]	[more]
CAN66637.1	1.1e-30	61.68	hypothetical protein VITISV_011340 [Vitis vinifera]	[more]

BLAST of CsaV3_5G013290 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G013290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P10978\|POLX_TOBAC	1.2e-12	34.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
sp\|Q94HW2\|POLR1_ARATH	4.6e-07	30.61	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
sp\|Q9ZT94\|POLR2_ARATH	4.6e-07	36.36	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of CsaV3_5G013290 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A5CBN2\|A5CBN2_VITVI	6.0e-36	72.64	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_016964 PE=4 SV=1	[more]
tr\|A5B994\|A5B994_VITVI	1.0e-35	71.56	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_023328 PE=4 SV=1	[more]
tr\|A0A2N9FN92\|A0A2N9FN92_FAGSY	8.6e-35	69.72	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16505 PE=4 SV=1	[more]
tr\|A0A2N9H4X9\|A0A2N9H4X9_FAGSY	8.6e-35	69.72	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34551 PE=4 SV=1	[more]
tr\|A0A2N9FDD9\|A0A2N9FDD9_FAGSY	1.1e-34	71.84	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16769 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G013290.1	CsaV3_5G013290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 6..134
None	No IPR available	PANTHER	PTHR11439:SF234	SUBFAMILY NOT NAMED	coord: 6..134

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G013290	CSPI05G12430	Wild cucumber (PI 183967)	cpicucB299

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G013290	Watermelon (97103) v2	cucwmbB375
CsaV3_5G013290	Wax gourd	cucwgoB528
CsaV3_5G013290	Silver-seed gourd	carcucB0205
CsaV3_5G013290	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G013290	Cucurbita maxima (Rimu)	cmacucB0876
CsaV3_5G013290	Cucurbita moschata (Rifu)	cmocucB0862
CsaV3_5G013290	Cucurbita pepo (Zucchini)	cpecucB0532
CsaV3_5G013290	Bottle gourd (USVL1VR-Ls)	cuclsiB360
CsaV3_5G013290	Melon (DHL92) v3.5.1	cucmeB390
CsaV3_5G013290	Melon (DHL92) v3.6.1	cucmedB364
CsaV3_5G013290	Watermelon (Charleston Gray)	cucwcgB377
CsaV3_5G013290	Watermelon (97103) v1	cucwmB463