CsaV3_5G012930 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G012930
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Cysteine proteinase inhibitor
Location	chr5 : 9171116 .. 9171436 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGTGTACAAGTACTTCCAAATACTCATGACCTGATTAAGGATGTCCATAGCCCAAACGTGATAGAAGCTGGAAAGATAGCAGTGGATGAACATAACAAGAAAGAAAATGACAATTTAGTTTTCACTCGTGTAGTGAGTGGTTTAGCACCCCGTGCTATTATTGGAACTATATTATGGTCATATATTCTCGTGATAGAAGCTAAAAACTGCGACGGATATCCTGTGGCATATGTGGCTAAAATAGTTAAGTATCTTACAATTCCAGAAAATAGCTATGAACTTGTCAGCTTTCAAGCTATACTCGGGTATAAGTAG

mRNA sequence

ATGAGTTGTGTACAAGTACTTCCAAATACTCATGACCTGATTAAGGATGTCCATAGCCCAAACGTGATAGAAGCTGGAAAGATAGCAGTGGATGAACATAACAAGAAAGAAAATGACAATTTAGTTTTCACTCGTGTAGTGAGTGGTTTAGCACCCCGTGCTATTATTGGAACTATATTATGGTCATATATTCTCGTGATAGAAGCTAAAAACTGCGACGGATATCCTGTGGCATATGTGGCTAAAATAGTTAAGTATCTTACAATTCCAGAAAATAGCTATGAACTTGTCAGCTTTCAAGCTATACTCGGGTATAAGTAG

Coding sequence (CDS)

ATGAGTTGTGTACAAGTACTTCCAAATACTCATGACCTGATTAAGGATGTCCATAGCCCAAACGTGATAGAAGCTGGAAAGATAGCAGTGGATGAACATAACAAGAAAGAAAATGACAATTTAGTTTTCACTCGTGTAGTGAGTGGTTTAGCACCCCGTGCTATTATTGGAACTATATTATGGTCATATATTCTCGTGATAGAAGCTAAAAACTGCGACGGATATCCTGTGGCATATGTGGCTAAAATAGTTAAGTATCTTACAATTCCAGAAAATAGCTATGAACTTGTCAGCTTTCAAGCTATACTCGGGTATAAGTAG

Protein sequence

MSCVQVLPNTHDLIKDVHSPNVIEAGKIAVDEHNKKENDNLVFTRVVSGLAPRAIIGTILWSYILVIEAKNCDGYPVAYVAKIVKYLTIPENSYELVSFQAILGYK

Homology

[Close]

BLAST of CsaV3_5G012930 vs. NCBI nr
Match: XP_010434812.1 (PREDICTED: cysteine proteinase inhibitor 4-like [Camelina sativa])

HSP 1 Score: 59.3 bits (142), Expect = 9.2e-06
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 14  IKDVHSPNVIEAGKIAVDEHNKKENDNLVFTRVVSGLAPRAIIGTILWSYILVIEAKNCD 73
           IKD+  PNV+   K A++EHNK+  +NLVF +VV G   + + GT    Y + I AKN  
Sbjct: 32  IKDLSDPNVVAVAKYAIEEHNKQSKENLVFVKVVEG-TTQVVSGT---KYDMKIAAKNGG 91

Query: 74  GYPVAYVAKIVKYLTIPENSYELVSFQAI 103
           G    Y A +V+ L +   S E  SF+A+
Sbjct: 92  GQIKNYEAVVVEKLWLRSKSLE--SFKAV 114

[Close]

BLAST of CsaV3_5G012930 vs. NCBI nr
Match: XP_010449778.1 (PREDICTED: cysteine proteinase inhibitor 4-like [Camelina sativa])

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-05
Identity = 37/89 (41.57%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 14  IKDVHSPNVIEAGKIAVDEHNKKENDNLVFTRVVSGLAPRAIIGTILWSYILVIEAKNCD 73
           IKDV  PNV+     A++EHNK+  +NLVF +VV G   + + GT    Y L I AKN  
Sbjct: 32  IKDVSDPNVVAIANYAIEEHNKQSKENLVFVKVVEG-TTQVVSGT---KYDLKIAAKNGG 91

Query: 74  GYPVAYVAKIVKYLTIPENSYELVSFQAI 103
           G    Y A +V+ L +   S E  SF+A+
Sbjct: 92  GQIKNYEAVVVEKLWLRSKSLE--SFKAV 114

[Close]

BLAST of CsaV3_5G012930 vs. NCBI nr
Match: XP_018469246.1 (PREDICTED: cysteine proteinase inhibitor 4-like [Raphanus sativus])

HSP 1 Score: 58.5 bits (140), Expect = 1.6e-05
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 14 IKDVHSPNVIEAGKIAVDEHNKKENDNLVFTRVVSGLAPRAIIGTILWSYILVIEAKNCD 73
          IKDV +PNVIE  K A+DEHN + NDNL+F  +V G   R ++  I+  Y L+I  KN  
Sbjct: 31 IKDVSAPNVIEVAKYAIDEHNSETNDNLMFVEIVEG--KREVLSAII--YDLIIAVKNEG 90

Query: 74 GYPVAYVAKIVK 86
          G    Y A +++
Sbjct: 91 GATKNYKAVVME 98

[Close]

BLAST of CsaV3_5G012930 vs. NCBI nr
Match: CDP21698.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 56.2 bits (134), Expect = 7.8e-05
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 20  PNVIEAGKIAVDEHNKKENDNLVFTRVVSGLAPRAIIGTILWSYILVIEAKNCDGYPVAY 79
           P++ E G+ AVDEHNK+  D LVF  VV+GL     + T+ W   L+IEAK+ DG    Y
Sbjct: 60  PHIQELGRFAVDEHNKQTGDKLVFVAVVAGLKKPVELATLYW---LIIEAKDSDGNQNIY 119

Query: 80  VAKI 84
            A +
Sbjct: 120 KALV 120

[Close]

BLAST of CsaV3_5G012930 vs. NCBI nr
Match: XP_010440147.1 (PREDICTED: cysteine proteinase inhibitor 4-like [Camelina sativa])

HSP 1 Score: 56.2 bits (134), Expect = 7.8e-05
Identity = 36/89 (40.45%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 14  IKDVHSPNVIEAGKIAVDEHNKKENDNLVFTRVVSGLAPRAIIGTILWSYILVIEAKNCD 73
           IKD+  PNV+   K A+ EHNK+  +NLVF +VV G   + + GT    Y L I AKN  
Sbjct: 33  IKDLSDPNVVAVAKYAIKEHNKQSKENLVFVKVVEG-TTQVVSGT---KYDLKIAAKNGG 92

Query: 74  GYPVAYVAKIVKYLTIPENSYELVSFQAI 103
                Y A +V+ L +   S E  SF+A+
Sbjct: 93  DQIKNYEAVVVEKLWLRSKSLE--SFKAV 115

[Close]

BLAST of CsaV3_5G012930 vs. TAIR10
Match: AT4G16500.1 (Cystatin/monellin superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.0e-07
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 14  IKDVHSPNVIEAGKIAVDEHNKKENDNLVFTRVVSGLAPRAIIGTILWSYILVIEAKNCD 73
           IK+V  P+V+   K A++EHNK+  + LVF +VV G   + + GT    Y L I AK+  
Sbjct: 35  IKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEG-TTQVVSGT---KYDLKIAAKDGG 94

Query: 74  GYPVAYVAKIVKYLTIPENSYELVSFQAI 103
           G    Y A +V+ L +   S E  SF+A+
Sbjct: 95  GKIKNYEAVVVEKLWLHSKSLE--SFKAL 117

[Close]

BLAST of CsaV3_5G012930 vs. TAIR10
Match: AT5G47550.1 (Cystatin/monellin superfamily protein)

HSP 1 Score: 42.4 bits (98), Expect = 2.1e-04
Identity = 26/68 (38.24%), Postives = 37/68 (54.41%), Query Frame = 0


Query: 14 IKDVHSPNVIEAGKIAVDEHNKKENDNLVFTRVVSGLAPRAIIGTILWSYILVIEAKNCD 73
          I +V  P V+E G+ AV E+NK+    L F  VVSG   + + GT   +Y L + A + D
Sbjct: 34 ISNVTDPQVVEIGEFAVSEYNKRSESGLKFETVVSG-ETQVVSGT---NYRLKVAANDGD 93

Query: 74 GYPVAYVA 82
          G    Y+A
Sbjct: 94 GVSKNYLA 97

[Close]

BLAST of CsaV3_5G012930 vs. Swiss-Prot
Match: sp|Q84WT8|CYT4_ARATH (Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana OX=3702 GN=CYS4 PE=3 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 3.7e-06
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 14  IKDVHSPNVIEAGKIAVDEHNKKENDNLVFTRVVSGLAPRAIIGTILWSYILVIEAKNCD 73
           IK+V  P+V+   K A++EHNK+  + LVF +VV G   + + GT    Y L I AK+  
Sbjct: 35  IKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVVEG-TTQVVSGT---KYDLKIAAKDGG 94

Query: 74  GYPVAYVAKIVKYLTIPENSYELVSFQAI 103
           G    Y A +V+ L +   S E  SF+A+
Sbjct: 95  GKIKNYEAVVVEKLWLHSKSLE--SFKAL 117

[Close]

BLAST of CsaV3_5G012930 vs. TrEMBL
Match: tr|A0A068VPR8|A0A068VPR8_COFCA (Cysteine proteinase inhibitor OS=Coffea canephora OX=49390 GN=GSCOC_T00008667001 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.1e-05
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 20  PNVIEAGKIAVDEHNKKENDNLVFTRVVSGLAPRAIIGTILWSYILVIEAKNCDGYPVAY 79
           P++ E G+ AVDEHNK+  D LVF  VV+GL     + T+ W   L+IEAK+ DG    Y
Sbjct: 60  PHIQELGRFAVDEHNKQTGDKLVFVAVVAGLKKPVELATLYW---LIIEAKDSDGNQNIY 119

Query: 80  VAKI 84
            A +
Sbjct: 120 KALV 120

[Close]

BLAST of CsaV3_5G012930 vs. TrEMBL
Match: tr|R0GZD4|R0GZD4_9BRAS (Cysteine proteinase inhibitor OS=Capsella rubella OX=81985 GN=CARUB_v10006049mg PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-04
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 14  IKDVHSPNVIEAGKIAVDEHNKKENDNLVFTRVVSGLAPRAIIGTILWSYILVIEAKNCD 73
           IK++  PNV+   K A+ EHNK+  ++LVF +VV G   + + GT    Y L I AKN  
Sbjct: 36  IKNLSDPNVVAVAKYAIAEHNKQSKESLVFVKVVEG-TTQVVAGT---KYDLKIAAKNGA 95

Query: 74  GYPVAYVAKIVKYLTIPENSYELVSFQAI 103
           G  + Y A +V+ L +  +S  L SF+A+
Sbjct: 96  GKVLNYEAVVVEKLWL--HSKTLESFKAV 118

[Close]

BLAST of CsaV3_5G012930 vs. TrEMBL
Match: tr|V4MRH3|V4MRH3_EUTSA (Cysteine proteinase inhibitor OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10026611mg PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.6e-04
Identity = 37/89 (41.57%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 14  IKDVHSPNVIEAGKIAVDEHNKKENDNLVFTRVVSGLAPRAIIGTILWSYILVIEAKNCD 73
           IKDV  PNV    K A++EHNK+   NLVF +VV G   + + G     Y L+I AKN  
Sbjct: 29  IKDVSDPNVEAIAKYAIEEHNKQSKANLVFEKVVRG-KEQVVSGK---KYDLIIAAKNGG 88

Query: 74  GYPVAYVAKIVKYLTIPENSYELVSFQAI 103
           G    Y A +V+ L   E+   L SF+A+
Sbjct: 89  GATKNYEAVVVERLW--EHFRNLESFKAV 111

[Close]

BLAST of CsaV3_5G012930 vs. TrEMBL
Match: tr|A0A0D6QZP0|A0A0D6QZP0_ARACU (Cysteine proteinase inhibitor OS=Araucaria cunninghamii OX=56994 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.6e-04
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 18  HSPNVIEAGKIAVDEHNKKENDNLVFTRVVSGLAPRAIIGTILWSYILVIEAKNCDGYPV 77
           +S  + E G+ AV+EHNK++ND+L F RVV     + + GT+   Y L +EAK  DG P 
Sbjct: 50  NSVEINEVGRYAVEEHNKQQNDDLSFLRVVKA-QEQTVAGTM---YYLTVEAKGLDGKPK 109

Query: 78  AYVAKI 84
            Y AK+
Sbjct: 110 IYDAKV 111

[Close]

BLAST of CsaV3_5G012930 vs. TrEMBL
Match: tr|D7M9U3|D7M9U3_ARALL (Cysteine proteinase inhibitor OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_493227 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-04
Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 10  THDLIKDVHSPNVIEAGKIAVDEHNKKENDNLVFTRVVSGLAPRAIIGTILWSYILVIEA 69
           T   IK+V  P+V+   K A+DEHNK+  ++LVF +VV G   + + GT    Y L I A
Sbjct: 30  TRKPIKNVSDPDVVAVAKYAIDEHNKQSKEHLVFVKVVEG-TTQVVSGT---KYDLKIAA 89

Query: 70  KNCDGYPVAYVAKIVKYLTIPENSYELVSFQA 102
           K+  G    Y A +V+ L +  +S  L SF+A
Sbjct: 90  KDGSGKIKNYEAVVVEKLWL--HSKTLESFKA 115

The following BLAST results are available for this feature:

BLAST of CsaV3_5G012930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_010434812.1	9.2e-06	40.45	PREDICTED: cysteine proteinase inhibitor 4-like [Camelina sativa]	[more]
XP_010449778.1	1.2e-05	41.57	PREDICTED: cysteine proteinase inhibitor 4-like [Camelina sativa]	[more]
XP_018469246.1	1.6e-05	44.44	PREDICTED: cysteine proteinase inhibitor 4-like [Raphanus sativus]	[more]
CDP21698.1	7.8e-05	45.31	unnamed protein product [Coffea canephora]	[more]
XP_010440147.1	7.8e-05	40.45	PREDICTED: cysteine proteinase inhibitor 4-like [Camelina sativa]	[more]

BLAST of CsaV3_5G012930 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16500.1	2.0e-07	38.20	Cystatin/monellin superfamily protein	[more]
AT5G47550.1	2.1e-04	38.24	Cystatin/monellin superfamily protein	[more]

BLAST of CsaV3_5G012930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84WT8\|CYT4_ARATH	3.7e-06	38.20	Cysteine proteinase inhibitor 4 OS=Arabidopsis thaliana OX=3702 GN=CYS4 PE=3 SV=...	[more]

BLAST of CsaV3_5G012930 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A068VPR8\|A0A068VPR8_COFCA	5.1e-05	45.31	Cysteine proteinase inhibitor OS=Coffea canephora OX=49390 GN=GSCOC_T00008667001...	[more]
tr\|R0GZD4\|R0GZD4_9BRAS	2.0e-04	39.33	Cysteine proteinase inhibitor OS=Capsella rubella OX=81985 GN=CARUB_v10006049mg ...	[more]
tr\|V4MRH3\|V4MRH3_EUTSA	2.6e-04	41.57	Cysteine proteinase inhibitor OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10026611...	[more]
tr\|A0A0D6QZP0\|A0A0D6QZP0_ARACU	2.6e-04	43.94	Cysteine proteinase inhibitor OS=Araucaria cunninghamii OX=56994 PE=3 SV=1	[more]
tr\|D7M9U3\|D7M9U3_ARALL	4.4e-04	39.13	Cysteine proteinase inhibitor OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=AR...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004869	cysteine-type endopeptidase inhibitor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR027214	Cystatin
IPR000010	Cystatin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G012930.1	CsaV3_5G012930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000010	Cystatin domain	PFAM	PF16845	SQAPI	coord: 14..101 e-value: 2.8E-13 score: 49.9
None	No IPR available	GENE3D	G3DSA:3.10.450.10		coord: 7..104 e-value: 3.4E-14 score: 54.6
None	No IPR available	PANTHER	PTHR11413:SF65	CYSTEINE PROTEINASE INHIBITOR 5	coord: 12..100
None	No IPR available	PRODOM	PD001231		coord: 22..99 e-value: 2.0E-4 score: 99.0
None	No IPR available	SUPERFAMILY	SSF54403	Cystatin/monellin	coord: 19..101
IPR027214	Cystatin	PANTHER	PTHR11413	CYSTATIN FAMILY MEMBER	coord: 12..100

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G012930	Silver-seed gourd	carcucB0388
CsaV3_5G012930	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G012930	Cucurbita maxima (Rimu)	cmacucB0900
CsaV3_5G012930	Cucurbita maxima (Rimu)	cmacucB0876
CsaV3_5G012930	Cucurbita moschata (Rifu)	cmocucB0862
CsaV3_5G012930	Cucurbita moschata (Rifu)	cmocucB0884
CsaV3_5G012930	Cucurbita pepo (Zucchini)	cpecucB0532
CsaV3_5G012930	Cucurbita pepo (Zucchini)	cpecucB0555
CsaV3_5G012930	Wild cucumber (PI 183967)	cpicucB285
CsaV3_5G012930	Wild cucumber (PI 183967)	cpicucB299
CsaV3_5G012930	Wild cucumber (PI 183967)	cpicucB300
CsaV3_5G012930	Bottle gourd (USVL1VR-Ls)	cuclsiB363
CsaV3_5G012930	Melon (DHL92) v3.5.1	cucmeB372
CsaV3_5G012930	Melon (DHL92) v3.5.1	cucmeB373
CsaV3_5G012930	Melon (DHL92) v3.6.1	cucmedB376
CsaV3_5G012930	Watermelon (Charleston Gray)	cucwcgB377
CsaV3_5G012930	Watermelon (Charleston Gray)	cucwcgB379
CsaV3_5G012930	Watermelon (97103) v1	cucwmB463
CsaV3_5G012930	Watermelon (97103) v1	cucwmB465
CsaV3_5G012930	Watermelon (97103) v2	cucwmbB375
CsaV3_5G012930	Watermelon (97103) v2	cucwmbB376
CsaV3_5G012930	Wax gourd	cucwgoB521