CsaV3_5G012880 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G012880
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 9029572 .. 9029859 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGCCTCTACAAGCTCCACGGAAATCAACGGAAGCTCTCTTCCTACAAGCAAGAGCAATGGTCTAATAGTGAACTCTCGACACACCATCTATCAGACATCAGTCATCAAATTGATCGACAACAGTTACCTTGCATGGAAACTGCAGATTCTCAACACGGTATATGGGCATTCTTTAGAAAATCATATTCTGAGCGAAAGCCAACCAGAGAAGAAGCACTGCCGAAAGAAATGTGGAAGCAACGGAAGGAAGTTCGAAAAGAAATGTTGAGAGATCGGAACTAA

mRNA sequence

ATGATTAGCCTCTACAAGCTCCACGGAAATCAACGGAAGCTCTCTTCCTACAAGCAAGAGCAATGGTCTAATAGTGAACTCTCGACACACCATCTATCAGACATCAGTCATCAAATTGATCGACAACAGTTACCTTGCATGGAAACTGCAGATTCTCAACACGGTATATGGGCATTCTTTAGAAAATCATATTCTGAGCGAAAGCCAACCAGAGAAGAAGCACTGCCGAAAGAAATGTGGAAGCAACGGAAGGAAGTTCGAAAAGAAATGTTGAGAGATCGGAACTAA

Coding sequence (CDS)

ATGATTAGCCTCTACAAGCTCCACGGAAATCAACGGAAGCTCTCTTCCTACAAGCAAGAGCAATGGTCTAATAGTGAACTCTCGACACACCATCTATCAGACATCAGTCATCAAATTGATCGACAACAGTTACCTTGCATGGAAACTGCAGATTCTCAACACGGTATATGGGCATTCTTTAGAAAATCATATTCTGAGCGAAAGCCAACCAGAGAAGAAGCACTGCCGAAAGAAATGTGGAAGCAACGGAAGGAAGTTCGAAAAGAAATGTTGAGAGATCGGAACTAA

Protein sequence

MISLYKLHGNQRKLSSYKQEQWSNSELSTHHLSDISHQIDRQQLPCMETADSQHGIWAFFRKSYSERKPTREEALPKEMWKQRKEVRKEMLRDRN
Homology
[Close]
BLAST of CsaV3_5G012880 vs. NCBI nr
Match: KGN50785.1 (hypothetical protein Csa_5G262230 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 4.8e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MISLYKLHGNQRKLSSYKQEQWSNSELSTHHLSDISHQIDRQQLPCMETADSQHGIWAFF 60
          MISLYKLHGNQRKLSSYKQEQWSNSELSTHHLSDISHQIDRQQLPCMETADSQHGIWAFF
Sbjct: 1  MISLYKLHGNQRKLSSYKQEQWSNSELSTHHLSDISHQIDRQQLPCMETADSQHGIWAFF 60

Query: 61 RKSYSERKPTREEALPKEMWKQRKEVRKEMLRDRN 96
          RKSYSERKPTREEALPKEMWKQRKEVRKEMLRDRN
Sbjct: 61 RKSYSERKPTREEALPKEMWKQRKEVRKEMLRDRN 95

[Close]
BLAST of CsaV3_5G012880 vs. TrEMBL
Match: tr|A0A0A0KM96|A0A0A0KM96_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G262230 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.2e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MISLYKLHGNQRKLSSYKQEQWSNSELSTHHLSDISHQIDRQQLPCMETADSQHGIWAFF 60
          MISLYKLHGNQRKLSSYKQEQWSNSELSTHHLSDISHQIDRQQLPCMETADSQHGIWAFF
Sbjct: 1  MISLYKLHGNQRKLSSYKQEQWSNSELSTHHLSDISHQIDRQQLPCMETADSQHGIWAFF 60

Query: 61 RKSYSERKPTREEALPKEMWKQRKEVRKEMLRDRN 96
          RKSYSERKPTREEALPKEMWKQRKEVRKEMLRDRN
Sbjct: 61 RKSYSERKPTREEALPKEMWKQRKEVRKEMLRDRN 95

The following BLAST results are available for this feature:
BLAST of CsaV3_5G012880 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50785.14.8e-46100.00hypothetical protein Csa_5G262230 [Cucumis sativus][more]
BLAST of CsaV3_5G012880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G012880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G012880 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KM96|A0A0A0KM96_CUCSA3.2e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G262230 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G012880.1CsaV3_5G012880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G012880CsGy5G009610Cucumber (Gy14) v2cgybcucB232
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G012880Watermelon (97103) v2cucwmbB375
CsaV3_5G012880Watermelon (97103) v2cucwmbB376
CsaV3_5G012880Wax gourdcucwgoB521
CsaV3_5G012880Silver-seed gourdcarcucB0388
CsaV3_5G012880Cucumber (Gy14) v1cgycucB034
CsaV3_5G012880Cucurbita maxima (Rimu)cmacucB0900
CsaV3_5G012880Cucurbita maxima (Rimu)cmacucB0876
CsaV3_5G012880Cucurbita moschata (Rifu)cmocucB0862
CsaV3_5G012880Cucurbita moschata (Rifu)cmocucB0884
CsaV3_5G012880Cucurbita pepo (Zucchini)cpecucB0532
CsaV3_5G012880Cucurbita pepo (Zucchini)cpecucB0555
CsaV3_5G012880Wild cucumber (PI 183967)cpicucB285
CsaV3_5G012880Wild cucumber (PI 183967)cpicucB299
CsaV3_5G012880Wild cucumber (PI 183967)cpicucB300
CsaV3_5G012880Bottle gourd (USVL1VR-Ls)cuclsiB363
CsaV3_5G012880Melon (DHL92) v3.5.1cucmeB372
CsaV3_5G012880Watermelon (Charleston Gray)cucwcgB377
CsaV3_5G012880Watermelon (Charleston Gray)cucwcgB379
CsaV3_5G012880Watermelon (97103) v1cucwmB463
CsaV3_5G012880Watermelon (97103) v1cucwmB465