CsaV3_5G012660 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G012660
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionPeroxidase
Locationchr5 : 8163672 .. 8163836 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCGGTGGTCCATCATGGACAGTAAGGCTTGGAAGAAGAGATTCGACCACTGCAAGCAAAGCTTTAGCAGAGAATGAGCTTCCACATTTTCAAGCAGGTCTTGATCGCTTATTTCCATCTTTTCAAATAAAGGACTTAGTACAAGAGATATGGTTGCACTCTCCG

mRNA sequence

GTCGGTGGTCCATCATGGACAGTAAGGCTTGGAAGAAGAGATTCGACCACTGCAAGCAAAGCTTTAGCAGAGAATGAGCTTCCACATTTTCAAGCAGGTCTTGATCGCTTATTTCCATCTTTTCAAATAAAGGACTTAGTACAAGAGATATGGTTGCACTCTCCG

Coding sequence (CDS)

GTCGGTGGTCCATCATGGACAGTAAGGCTTGGAAGAAGAGATTCGACCACTGCAAGCAAAGCTTTAGCAGAGAATGAGCTTCCACATTTTCAAGCAGGTCTTGATCGCTTATTTCCATCTTTTCAAATAAAGGACTTAGTACAAGAGATATGGTTGCACTCTCCG

Protein sequence

VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSFQIKDLVQEIWLHSP
Homology
[Close]
BLAST of CsaV3_5G012660 vs. NCBI nr
Match: AAZ42168.1 (lignin peroxidase-like, partial [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 3.1e-13
Identity = 40/46 (86.96%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1   VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSFQIKDL 47
           VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRL   F  K L
Sbjct: 74  VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLISIFSNKGL 119

[Close]
BLAST of CsaV3_5G012660 vs. NCBI nr
Match: XP_008460239.1 (PREDICTED: lignin-forming anionic peroxidase-like [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-12
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 1   VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSFQIKDL 47
           VGGPSWTV+LGRRDSTTASK LAENELPHFQAGLDRL   F  K L
Sbjct: 134 VGGPSWTVKLGRRDSTTASKTLAENELPHFQAGLDRLISIFSNKGL 179

[Close]
BLAST of CsaV3_5G012660 vs. NCBI nr
Match: XP_022931633.1 (lignin-forming anionic peroxidase-like [Cucurbita moschata] >XP_022931634.1 lignin-forming anionic peroxidase-like [Cucurbita moschata])

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-10
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 1   VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSFQIKDL 47
           VGGPSWTV+LGRRDSTTASK LAE+ELPHFQ  LDRL   F  K L
Sbjct: 135 VGGPSWTVKLGRRDSTTASKTLAESELPHFQESLDRLISIFSNKGL 180

[Close]
BLAST of CsaV3_5G012660 vs. NCBI nr
Match: XP_022933287.1 (lignin-forming anionic peroxidase-like [Cucurbita moschata])

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-10
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 1   VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSFQIKDL 47
           VGGPSWTV+LGRRDSTTASK LAE+ELPHFQ  LDRL   F  K L
Sbjct: 135 VGGPSWTVKLGRRDSTTASKTLAESELPHFQESLDRLISIFSNKGL 180

[Close]
BLAST of CsaV3_5G012660 vs. NCBI nr
Match: XP_023523073.1 (lignin-forming anionic peroxidase-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-10
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 1  VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSFQIKDL 47
          VGGPSWTV+LGRRDSTTASK LAE+ELPHFQ  LDRL   F  K L
Sbjct: 31 VGGPSWTVKLGRRDSTTASKTLAESELPHFQESLDRLISIFSNKGL 76

[Close]
BLAST of CsaV3_5G012660 vs. TAIR10
Match: AT1G14550.1 (Peroxidase superfamily protein)

HSP 1 Score: 51.2 bits (121), Expect = 2.3e-07
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 1   VGGPSWTVRLGRRDSTTASKALAEN-ELPHFQAGLDRLFPSFQIKDL 47
           VGGP W V++GRRDST A KALA + ELP F+  LD+L   F  K L
Sbjct: 136 VGGPKWAVKVGRRDSTAAFKALANSGELPGFKDTLDQLSGLFSKKGL 182

[Close]
BLAST of CsaV3_5G012660 vs. TAIR10
Match: AT1G14540.1 (Peroxidase superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 6.8e-07
Identity = 23/46 (50.00%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 1   VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSFQIKDL 47
           VGGP + V++GRRDST A +A+A+ +LP+F+A L+ L   F  K L
Sbjct: 131 VGGPRYDVKVGRRDSTNAFRAIADRDLPNFRASLNDLSELFLRKGL 176

[Close]
BLAST of CsaV3_5G012660 vs. TAIR10
Match: AT2G18140.1 (Peroxidase superfamily protein)

HSP 1 Score: 46.6 bits (109), Expect = 5.7e-06
Identity = 23/45 (51.11%), Postives = 27/45 (60.00%), Query Frame = 0 

Query: 2   GGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSFQIKDL 47
           GGPSWTV LGRRDS TAS+A    +LP      D +F  F  + L
Sbjct: 146 GGPSWTVPLGRRDSATASRAKPNKDLPEPDNLFDTIFLRFSNEGL 190

[Close]
BLAST of CsaV3_5G012660 vs. TAIR10
Match: AT5G05340.1 (Peroxidase superfamily protein)

HSP 1 Score: 45.8 bits (107), Expect = 9.8e-06
Identity = 19/41 (46.34%), Postives = 29/41 (70.73%), Query Frame = 0 

Query: 1   VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSF 42
           +GGP+W V++GRRD+ TAS+A A + +P   + L +L  SF
Sbjct: 140 LGGPNWNVKVGRRDARTASQAAANSNIPAPTSSLSQLISSF 180

[Close]
BLAST of CsaV3_5G012660 vs. TAIR10
Match: AT1G68850.1 (Peroxidase superfamily protein)

HSP 1 Score: 44.3 bits (103), Expect = 2.9e-05
Identity = 24/59 (40.68%), Postives = 32/59 (54.24%), Query Frame = 0 

Query: 1   VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSF-----QIKDLVQEIWLHS 55
           VGGP W V +GR+DS TAS  LA   LP  + GL  +   F      ++D+V  I  H+
Sbjct: 140 VGGPYWDVPVGRKDSKTASYELATTNLPTPEEGLISIIAKFYSQGLSVEDMVALIGAHT 198

[Close]
BLAST of CsaV3_5G012660 vs. Swiss-Prot
Match: sp|Q02200|PERX_NICSY (Lignin-forming anionic peroxidase OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.1e-09
Identity = 31/46 (67.39%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 1   VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSFQIKDL 47
           VGGPSWTV+LGRRDSTTASK LAE +LP     L+RL  SF  K L
Sbjct: 139 VGGPSWTVKLGRRDSTTASKTLAETDLPGPFDPLNRLISSFASKGL 184

[Close]
BLAST of CsaV3_5G012660 vs. Swiss-Prot
Match: sp|Q4W1I8|PER1_ZINVI (Basic peroxidase OS=Zinnia violacea OX=34245 GN=POD1 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.5e-07
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 0 

Query: 1   VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSFQIKDL 47
           VGGPSWTVRLGRRDSTT++ A A  +LP     L +L  +F  K L
Sbjct: 138 VGGPSWTVRLGRRDSTTSNAAQAATDLPRGNMVLSQLISNFANKGL 183

[Close]
BLAST of CsaV3_5G012660 vs. Swiss-Prot
Match: sp|Q4W1I9|PER2_ZINVI (Basic peroxidase OS=Zinnia violacea OX=34245 GN=POD3 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 8.5e-07
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 0 

Query: 1   VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSFQIKDL 47
           VGGPSWTVRLGRRDSTT++ A A  +LP     L +L  +F  K L
Sbjct: 138 VGGPSWTVRLGRRDSTTSNAAQAATDLPRGNMVLSQLISNFANKGL 183

[Close]
BLAST of CsaV3_5G012660 vs. Swiss-Prot
Match: sp|Q05855|PER1_WHEAT (Peroxidase OS=Triticum aestivum OX=4565 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.2e-06
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 1   VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSFQIKDL 47
           +GGPSWTV LGRRDSTTAS +LA ++LP   +   +L  +F  K+L
Sbjct: 128 LGGPSWTVPLGRRDSTTASASLANSDLPGPSSSRSQLEAAFLKKNL 173

[Close]
BLAST of CsaV3_5G012660 vs. Swiss-Prot
Match: sp|Q9M9Q9|PER5_ARATH (Peroxidase 5 OS=Arabidopsis thaliana OX=3702 GN=PER5 PE=3 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 4.2e-06
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 0 

Query: 1   VGGPSWTVRLGRRDSTTASKALAEN-ELPHFQAGLDRLFPSFQIKDL 47
           VGGP W V++GRRDST A KALA + ELP F+  LD+L   F  K L
Sbjct: 136 VGGPKWAVKVGRRDSTAAFKALANSGELPGFKDTLDQLSGLFSKKGL 182

[Close]
BLAST of CsaV3_5G012660 vs. TrEMBL
Match: tr|Q45L80|Q45L80_CUCSA (Peroxidase (Fragment) OS=Cucumis sativus OX=3659 GN=LPO PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-13
Identity = 40/46 (86.96%), Postives = 40/46 (86.96%), Query Frame = 0 

Query: 1   VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSFQIKDL 47
           VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRL   F  K L
Sbjct: 74  VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLISIFSNKGL 119

[Close]
BLAST of CsaV3_5G012660 vs. TrEMBL
Match: tr|A0A1S3CDB5|A0A1S3CDB5_CUCME (Peroxidase OS=Cucumis melo OX=3656 GN=LOC103499118 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 0 

Query: 1   VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSFQIKDL 47
           VGGPSWTV+LGRRDSTTASK LAENELPHFQAGLDRL   F  K L
Sbjct: 134 VGGPSWTVKLGRRDSTTASKTLAENELPHFQAGLDRLISIFSNKGL 179

[Close]
BLAST of CsaV3_5G012660 vs. TrEMBL
Match: tr|B9S799|B9S799_RICCO (Peroxidase OS=Ricinus communis OX=3988 GN=RCOM_0774940 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-10
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 1   VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSFQIKDL 47
           VGGPSWTV LGR+DSTTAS+ LA  ELP F+ GLDRL  SFQIK L
Sbjct: 142 VGGPSWTVMLGRKDSTTASRTLANTELPSFKDGLDRLISSFQIKGL 187

[Close]
BLAST of CsaV3_5G012660 vs. TrEMBL
Match: tr|A0A0A0KMA0|A0A0A0KMA0_CUCSA (Peroxidase OS=Cucumis sativus OX=3659 GN=Csa_5G262770 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.6e-10
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 1   VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSFQIKDL 47
           VGGPSWTV+LGRRDST+ASK LAE+ELPHFQ  LDRL   F  K L
Sbjct: 138 VGGPSWTVKLGRRDSTSASKTLAESELPHFQESLDRLISIFANKGL 183

[Close]
BLAST of CsaV3_5G012660 vs. TrEMBL
Match: tr|A0A2C9U6N5|A0A2C9U6N5_MANES (Peroxidase OS=Manihot esculenta OX=3983 GN=MANES_17G093300 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.1e-10
Identity = 34/46 (73.91%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 1   VGGPSWTVRLGRRDSTTASKALAENELPHFQAGLDRLFPSFQIKDL 47
           VGGPSWTV LGRRDSTTAS+ LA NELP F+ GLDRL   FQ K L
Sbjct: 143 VGGPSWTVMLGRRDSTTASRTLANNELPSFKDGLDRLISRFQSKGL 188

The following BLAST results are available for this feature:
BLAST of CsaV3_5G012660 vs. NCBI nr
Match NameE-valueIdentityDescription
AAZ42168.13.1e-1386.96lignin peroxidase-like, partial [Cucumis sativus][more]
XP_008460239.12.0e-1282.61PREDICTED: lignin-forming anionic peroxidase-like [Cucumis melo][more]
XP_022931633.11.4e-1076.09lignin-forming anionic peroxidase-like [Cucurbita moschata] >XP_022931634.1 lign... [more]
XP_022933287.11.4e-1076.09lignin-forming anionic peroxidase-like [Cucurbita moschata][more]
XP_023523073.11.4e-1076.09lignin-forming anionic peroxidase-like, partial [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_5G012660 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G14550.12.3e-0757.45Peroxidase superfamily protein[more]
AT1G14540.16.8e-0750.00Peroxidase superfamily protein[more]
AT2G18140.15.7e-0651.11Peroxidase superfamily protein[more]
AT5G05340.19.8e-0646.34Peroxidase superfamily protein[more]
AT1G68850.12.9e-0540.68Peroxidase superfamily protein[more]
BLAST of CsaV3_5G012660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q02200|PERX_NICSY4.1e-0967.39Lignin-forming anionic peroxidase OS=Nicotiana sylvestris OX=4096 PE=2 SV=1[more]
sp|Q4W1I8|PER1_ZINVI8.5e-0756.52Basic peroxidase OS=Zinnia violacea OX=34245 GN=POD1 PE=1 SV=1[more]
sp|Q4W1I9|PER2_ZINVI8.5e-0756.52Basic peroxidase OS=Zinnia violacea OX=34245 GN=POD3 PE=1 SV=1[more]
sp|Q05855|PER1_WHEAT3.2e-0654.35Peroxidase OS=Triticum aestivum OX=4565 PE=2 SV=1[more]
sp|Q9M9Q9|PER5_ARATH4.2e-0657.45Peroxidase 5 OS=Arabidopsis thaliana OX=3702 GN=PER5 PE=3 SV=2[more]
BLAST of CsaV3_5G012660 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|Q45L80|Q45L80_CUCSA2.0e-1386.96Peroxidase (Fragment) OS=Cucumis sativus OX=3659 GN=LPO PE=2 SV=1[more]
tr|A0A1S3CDB5|A0A1S3CDB5_CUCME1.3e-1282.61Peroxidase OS=Cucumis melo OX=3656 GN=LOC103499118 PE=3 SV=1[more]
tr|B9S799|B9S799_RICCO3.6e-1073.91Peroxidase OS=Ricinus communis OX=3988 GN=RCOM_0774940 PE=3 SV=1[more]
tr|A0A0A0KMA0|A0A0A0KMA0_CUCSA3.6e-1073.91Peroxidase OS=Cucumis sativus OX=3659 GN=Csa_5G262770 PE=3 SV=1[more]
tr|A0A2C9U6N5|A0A2C9U6N5_MANES6.1e-1073.91Peroxidase OS=Manihot esculenta OX=3983 GN=MANES_17G093300 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006979response to oxidative stress
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0004601peroxidase activity
GO:0020037heme binding
Vocabulary: INTERPRO
TermDefinition
IPR010255Haem_peroxidase
IPR002016Haem_peroxidase_pln/fun/bac
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006979 response to oxidative stress
cellular_component GO:0005575 cellular_component
molecular_function GO:0020037 heme binding
molecular_function GO:0004601 peroxidase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G012660.1CsaV3_5G012660.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002016Haem peroxidase, plant/fungal/bacterialPFAMPF00141peroxidasecoord: 2..46
e-value: 1.1E-5
score: 25.1
IPR002016Haem peroxidase, plant/fungal/bacterialPROSITEPS50873PEROXIDASE_4coord: 1..46
score: 9.135
NoneNo IPR availableGENE3DG3DSA:1.10.420.10coord: 28..48
e-value: 8.0E-8
score: 33.8
NoneNo IPR availableGENE3DG3DSA:1.10.520.10coord: 2..27
e-value: 8.0E-8
score: 33.8
NoneNo IPR availablePANTHERPTHR31388:SF37PEROXIDASE 4-RELATEDcoord: 1..47
NoneNo IPR availablePANTHERPTHR31388FAMILY NOT NAMEDcoord: 1..47
IPR010255Haem peroxidaseSUPERFAMILYSSF48113Heme-dependent peroxidasescoord: 2..46

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G012660Cla97C11G207220Watermelon (97103) v2cucwmbB375
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G012660Silver-seed gourdcarcucB0773
CsaV3_5G012660Cucumber (Gy14) v2cgybcucB232
CsaV3_5G012660Cucumber (Gy14) v1cgycucB346
CsaV3_5G012660Cucurbita maxima (Rimu)cmacucB0876
CsaV3_5G012660Cucurbita maxima (Rimu)cmacucB0881
CsaV3_5G012660Cucurbita moschata (Rifu)cmocucB0862
CsaV3_5G012660Cucurbita moschata (Rifu)cmocucB0893
CsaV3_5G012660Cucurbita pepo (Zucchini)cpecucB0532
CsaV3_5G012660Cucurbita pepo (Zucchini)cpecucB0561
CsaV3_5G012660Wild cucumber (PI 183967)cpicucB285
CsaV3_5G012660Wild cucumber (PI 183967)cpicucB300
CsaV3_5G012660Bottle gourd (USVL1VR-Ls)cuclsiB363
CsaV3_5G012660Melon (DHL92) v3.5.1cucmeB372
CsaV3_5G012660Melon (DHL92) v3.5.1cucmeB379
CsaV3_5G012660Melon (DHL92) v3.6.1cucmedB371
CsaV3_5G012660Melon (DHL92) v3.6.1cucmedB363
CsaV3_5G012660Watermelon (Charleston Gray)cucwcgB377
CsaV3_5G012660Watermelon (97103) v1cucwmB463
CsaV3_5G012660Watermelon (97103) v2cucwmbB376
CsaV3_5G012660Wax gourdcucwgoB521