CsaV3_5G010190 (gene) Cucumber (Chinese Long) v3

NameCsaV3_5G010190
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 6041887 .. 6042052 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAATTCGAGCATCACACAAGTTCCAGAGGCTTCAGAGGAGAGCGGAGGTCAGATCCAGTGTGACCCTGAGACATCGTCACAAGTCTCCCTCGAACGCACAGTCTACAACAACCTGTTCCAGCATCTAAAACCGCAACAGCATAAGTGGCGTCGCAAAGCTCTTTGA

mRNA sequence

AATTCGAGCATCACACAAGTTCCAGAGGCTTCAGAGGAGAGCGGAGGTCAGATCCAGTGTGACCCTGAGACATCGTCACAAGTCTCCCTCGAACGCACAGTCTACAACAACCTGTTCCAGCATCTAAAACCGCAACAGCATAAGTGGCGTCGCAAAGCTCTTTG

Coding sequence (CDS)

AATTCGAGCATCACACAAGTTCCAGAGGCTTCAGAGGAGAGCGGAGGTCAGATCCAGTGTGACCCTGAGACATCGTCACAAGTCTCCCTCGAACGCACAGTCTACAACAACCTGTTCCAGCATCTAAAACCGCAACAGCATAAGTGGCGTCGCAAAGCTCTTTG

Protein sequence

NSSITQVPEASEESGGQIQCDPETSSQVSLERTVYNNLFQHLKPQQHKWRRKALX
BLAST of CsaV3_5G010190 vs. NCBI nr
Match: KGN50663.1 (hypothetical protein Csa_5G207920 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1   NSSITQVPEASEESGGQIQCDPETSSQVSLERTVYNNLFQHLKPQQHKWRRKAL 55
           NSSITQVPEASEESGGQIQCDPETSSQVSLERTVYNNLFQHLKPQQHKWRRKAL
Sbjct: 482 NSSITQVPEASEESGGQIQCDPETSSQVSLERTVYNNLFQHLKPQQHKWRRKAL 535

BLAST of CsaV3_5G010190 vs. TrEMBL
Match: tr|A0A0A0KM44|A0A0A0KM44_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G207920 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.5e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0

Query: 1   NSSITQVPEASEESGGQIQCDPETSSQVSLERTVYNNLFQHLKPQQHKWRRKAL 55
           NSSITQVPEASEESGGQIQCDPETSSQVSLERTVYNNLFQHLKPQQHKWRRKAL
Sbjct: 482 NSSITQVPEASEESGGQIQCDPETSSQVSLERTVYNNLFQHLKPQQHKWRRKAL 535

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN50663.12.3e-21100.00hypothetical protein Csa_5G207920 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KM44|A0A0A0KM44_CUCSA1.5e-21100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G207920 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G010190.1CsaV3_5G010190.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G010190Cucumber (Chinese Long) v3cuccucB131
CsaV3_5G010190Cucumber (Chinese Long) v3cuccucB205
CsaV3_5G010190Silver-seed gourdcarcucB0105
CsaV3_5G010190Silver-seed gourdcarcucB0369
CsaV3_5G010190Silver-seed gourdcarcucB0708
CsaV3_5G010190Cucumber (Gy14) v2cgybcucB294
CsaV3_5G010190Cucumber (Gy14) v2cgybcucB136
CsaV3_5G010190Cucumber (Gy14) v2cgybcucB232
CsaV3_5G010190Cucumber (Gy14) v1cgycucB208
CsaV3_5G010190Cucumber (Gy14) v1cgycucB284
CsaV3_5G010190Cucumber (Gy14) v1cgycucB560
CsaV3_5G010190Cucurbita maxima (Rimu)cmacucB0263
CsaV3_5G010190Cucurbita maxima (Rimu)cmacucB0883
CsaV3_5G010190Cucurbita maxima (Rimu)cmacucB0884
CsaV3_5G010190Cucurbita maxima (Rimu)cmacucB0664
CsaV3_5G010190Cucurbita maxima (Rimu)cmacucB0739
CsaV3_5G010190Cucurbita moschata (Rifu)cmocucB0301
CsaV3_5G010190Cucurbita moschata (Rifu)cmocucB0649
CsaV3_5G010190Cucurbita moschata (Rifu)cmocucB0728
CsaV3_5G010190Cucurbita moschata (Rifu)cmocucB0872
CsaV3_5G010190Cucurbita moschata (Rifu)cmocucB0873
CsaV3_5G010190Cucurbita pepo (Zucchini)cpecucB0541
CsaV3_5G010190Cucurbita pepo (Zucchini)cpecucB0542
CsaV3_5G010190Cucurbita pepo (Zucchini)cpecucB0648
CsaV3_5G010190Cucurbita pepo (Zucchini)cpecucB0773
CsaV3_5G010190Cucurbita pepo (Zucchini)cpecucB0914
CsaV3_5G010190Wild cucumber (PI 183967)cpicucB168
CsaV3_5G010190Wild cucumber (PI 183967)cpicucB285
CsaV3_5G010190Wild cucumber (PI 183967)cpicucB360
CsaV3_5G010190Bottle gourd (USVL1VR-Ls)cuclsiB359
CsaV3_5G010190Bottle gourd (USVL1VR-Ls)cuclsiB379
CsaV3_5G010190Bottle gourd (USVL1VR-Ls)cuclsiB387
CsaV3_5G010190Melon (DHL92) v3.5.1cucmeB371
CsaV3_5G010190Melon (DHL92) v3.5.1cucmeB405
CsaV3_5G010190Melon (DHL92) v3.6.1cucmedB362
CsaV3_5G010190Melon (DHL92) v3.6.1cucmedB399
CsaV3_5G010190Watermelon (Charleston Gray)cucwcgB368
CsaV3_5G010190Watermelon (Charleston Gray)cucwcgB404
CsaV3_5G010190Watermelon (Charleston Gray)cucwcgB422
CsaV3_5G010190Watermelon (97103) v1cucwmB392
CsaV3_5G010190Watermelon (97103) v1cucwmB409
CsaV3_5G010190Watermelon (97103) v1cucwmB410
CsaV3_5G010190Watermelon (97103) v1cucwmB456
CsaV3_5G010190Watermelon (97103) v2cucwmbB367
CsaV3_5G010190Watermelon (97103) v2cucwmbB385
CsaV3_5G010190Watermelon (97103) v2cucwmbB407
CsaV3_5G010190Wax gourdcucwgoB446
CsaV3_5G010190Wax gourdcucwgoB506
CsaV3_5G010190Wax gourdcucwgoB524