CsaV3_5G008240 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G008240
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 4975470 .. 4975824 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTAGAAGCATCACCAGAACTAGCTAAGATCAAGCTAAGAGAGTGCACAAGAGAATCAATGGTACGACGACTATCAGTGAGCTCTTGGATAATTTCACTCAAAGTGCAAGATTTAGTTGATAGCTAGAATATGGAAAATTCTATTTCTCAATAAAGGAGGAATAAAGTAACCCACCATCAAAGGTACGAAGATCATCCAGAAGAGGCAGGTTATCAACACGAGAAAGTCTAATGGGAATAAGAGTGATGTTAGAGATATGACTCCCTTGAAACAATATGTAGTTGAGAAGCAATGTTGTAGAAGTAAAATTAAGAACTTCTCCAACAAATCACAAATTGCAGGATGTTGA

mRNA sequence

ATGGATGTAGAAGCATCACCAGAACTAGCTAAGATCAAGCTAAGAGAGTGCACAAGAGAATCAATGAAGAGGCAGGTTATCAACACGAGAAAGTCTAATGGGAATAAGAGTGATGTTAGAGATATGACTCCCTTGAAACAATATGTAGTTGAGAAGCAATGTTGTAGAAGTAAAATTAAGAACTTCTCCAACAAATCACAAATTGCAGGATGTTGA

Coding sequence (CDS)

ATGGATGTAGAAGCATCACCAGAACTAGCTAAGATCAAGCTAAGAGAGTGCACAAGAGAATCAATGAAGAGGCAGGTTATCAACACGAGAAAGTCTAATGGGAATAAGAGTGATGTTAGAGATATGACTCCCTTGAAACAATATGTAGTTGAGAAGCAATGTTGTAGAAGTAAAATTAAGAACTTCTCCAACAAATCACAAATTGCAGGATGTTGA

Protein sequence

MDVEASPELAKIKLRECTRESMKRQVINTRKSNGNKSDVRDMTPLKQYVVEKQCCRSKIKNFSNKSQIAGC
Homology
[Close]
BLAST of CsaV3_5G008240 vs. NCBI nr
Match: KGN50565.1 (hypothetical protein Csa_5G182700 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 3.3e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MDVEASPELAKIKLRECTRESMKRQVINTRKSNGNKSDVRDMTPLKQYVVEKQCCRSKIK 60
          MDVEASPELAKIKLRECTRESMKRQVINTRKSNGNKSDVRDMTPLKQYVVEKQCCRSKIK
Sbjct: 1  MDVEASPELAKIKLRECTRESMKRQVINTRKSNGNKSDVRDMTPLKQYVVEKQCCRSKIK 60

Query: 61 NFSNKSQIAGC 72
          NFSNKSQIAGC
Sbjct: 61 NFSNKSQIAGC 71

[Close]
BLAST of CsaV3_5G008240 vs. TrEMBL
Match: tr|A0A0A0KLP7|A0A0A0KLP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182700 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.2e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MDVEASPELAKIKLRECTRESMKRQVINTRKSNGNKSDVRDMTPLKQYVVEKQCCRSKIK 60
          MDVEASPELAKIKLRECTRESMKRQVINTRKSNGNKSDVRDMTPLKQYVVEKQCCRSKIK
Sbjct: 1  MDVEASPELAKIKLRECTRESMKRQVINTRKSNGNKSDVRDMTPLKQYVVEKQCCRSKIK 60

Query: 61 NFSNKSQIAGC 72
          NFSNKSQIAGC
Sbjct: 61 NFSNKSQIAGC 71

The following BLAST results are available for this feature:
BLAST of CsaV3_5G008240 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50565.13.3e-31100.00hypothetical protein Csa_5G182700 [Cucumis sativus][more]
BLAST of CsaV3_5G008240 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G008240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G008240 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KLP7|A0A0A0KLP7_CUCSA2.2e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182700 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G008240.1CsaV3_5G008240.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G008240Cucumber (Chinese Long) v3cuccucB038
CsaV3_5G008240Cucumber (Chinese Long) v3cuccucB129
CsaV3_5G008240Cucumber (Chinese Long) v3cuccucB170
CsaV3_5G008240Cucumber (Chinese Long) v3cuccucB196
CsaV3_5G008240Cucumber (Chinese Long) v3cuccucB207
CsaV3_5G008240Silver-seed gourdcarcucB0105
CsaV3_5G008240Silver-seed gourdcarcucB0708
CsaV3_5G008240Cucumber (Gy14) v2cgybcucB040
CsaV3_5G008240Cucumber (Gy14) v2cgybcucB136
CsaV3_5G008240Cucumber (Gy14) v2cgybcucB182
CsaV3_5G008240Cucumber (Gy14) v2cgybcucB232
CsaV3_5G008240Cucumber (Gy14) v2cgybcucB296
CsaV3_5G008240Cucumber (Gy14) v1cgycucB059
CsaV3_5G008240Cucumber (Gy14) v1cgycucB264
CsaV3_5G008240Cucumber (Gy14) v1cgycucB284
CsaV3_5G008240Cucurbita maxima (Rimu)cmacucB0883
CsaV3_5G008240Cucurbita maxima (Rimu)cmacucB0884
CsaV3_5G008240Cucurbita maxima (Rimu)cmacucB0575
CsaV3_5G008240Cucurbita maxima (Rimu)cmacucB0663
CsaV3_5G008240Cucurbita maxima (Rimu)cmacucB0738
CsaV3_5G008240Cucurbita maxima (Rimu)cmacucB0805
CsaV3_5G008240Cucurbita maxima (Rimu)cmacucB0992
CsaV3_5G008240Cucurbita maxima (Rimu)cmacucB1032
CsaV3_5G008240Cucurbita moschata (Rifu)cmocucB0298
CsaV3_5G008240Cucurbita moschata (Rifu)cmocucB0563
CsaV3_5G008240Cucurbita moschata (Rifu)cmocucB0648
CsaV3_5G008240Cucurbita moschata (Rifu)cmocucB0727
CsaV3_5G008240Cucurbita moschata (Rifu)cmocucB0869
CsaV3_5G008240Cucurbita moschata (Rifu)cmocucB0789
CsaV3_5G008240Cucurbita moschata (Rifu)cmocucB0872
CsaV3_5G008240Cucurbita moschata (Rifu)cmocucB0873
CsaV3_5G008240Cucurbita moschata (Rifu)cmocucB0977
CsaV3_5G008240Cucurbita moschata (Rifu)cmocucB1015
CsaV3_5G008240Cucurbita pepo (Zucchini)cpecucB0090
CsaV3_5G008240Cucurbita pepo (Zucchini)cpecucB0347
CsaV3_5G008240Cucurbita pepo (Zucchini)cpecucB0541
CsaV3_5G008240Cucurbita pepo (Zucchini)cpecucB0542
CsaV3_5G008240Cucurbita pepo (Zucchini)cpecucB0773
CsaV3_5G008240Cucurbita pepo (Zucchini)cpecucB0913
CsaV3_5G008240Cucurbita pepo (Zucchini)cpecucB1068
CsaV3_5G008240Wild cucumber (PI 183967)cpicucB046
CsaV3_5G008240Wild cucumber (PI 183967)cpicucB168
CsaV3_5G008240Wild cucumber (PI 183967)cpicucB232
CsaV3_5G008240Wild cucumber (PI 183967)cpicucB285
CsaV3_5G008240Wild cucumber (PI 183967)cpicucB293
CsaV3_5G008240Wild cucumber (PI 183967)cpicucB362
CsaV3_5G008240Bottle gourd (USVL1VR-Ls)cuclsiB358
CsaV3_5G008240Bottle gourd (USVL1VR-Ls)cuclsiB365
CsaV3_5G008240Bottle gourd (USVL1VR-Ls)cuclsiB376
CsaV3_5G008240Bottle gourd (USVL1VR-Ls)cuclsiB379
CsaV3_5G008240Bottle gourd (USVL1VR-Ls)cuclsiB387
CsaV3_5G008240Melon (DHL92) v3.5.1cucmeB370
CsaV3_5G008240Melon (DHL92) v3.5.1cucmeB399
CsaV3_5G008240Melon (DHL92) v3.5.1cucmeB405
CsaV3_5G008240Melon (DHL92) v3.5.1cucmeB421
CsaV3_5G008240Melon (DHL92) v3.6.1cucmedB362
CsaV3_5G008240Melon (DHL92) v3.6.1cucmedB399
CsaV3_5G008240Melon (DHL92) v3.6.1cucmedB414
CsaV3_5G008240Watermelon (Charleston Gray)cucwcgB368
CsaV3_5G008240Watermelon (Charleston Gray)cucwcgB403
CsaV3_5G008240Watermelon (Charleston Gray)cucwcgB406
CsaV3_5G008240Watermelon (Charleston Gray)cucwcgB408
CsaV3_5G008240Watermelon (Charleston Gray)cucwcgB422
CsaV3_5G008240Watermelon (97103) v1cucwmB391
CsaV3_5G008240Watermelon (97103) v1cucwmB392
CsaV3_5G008240Watermelon (97103) v1cucwmB409
CsaV3_5G008240Watermelon (97103) v1cucwmB416
CsaV3_5G008240Watermelon (97103) v1cucwmB448
CsaV3_5G008240Watermelon (97103) v1cucwmB455
CsaV3_5G008240Watermelon (97103) v2cucwmbB370
CsaV3_5G008240Watermelon (97103) v2cucwmbB384
CsaV3_5G008240Watermelon (97103) v2cucwmbB390
CsaV3_5G008240Watermelon (97103) v2cucwmbB407
CsaV3_5G008240Wax gourdcucwgoB444
CsaV3_5G008240Wax gourdcucwgoB476
CsaV3_5G008240Wax gourdcucwgoB505