CsaV3_5G006940 (gene) Cucumber (Chinese Long) v3

NameCsaV3_5G006940
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 4635653 .. 4636197 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACTGAACCATTCGATCCTCTGTACATGTGTACGGTTGGATTACGAGATCGTAAACAGAAATCGTAAAACCGCGTTGTAGAGGATCTTTGGCTATAGTAAAAAAATACCAAAGCTCAGTTTCTGTCGCTATCCAGTAGTCCCTCCCAAGTCCCTTTCTCTTTCTTCTCATATCACCACCGAGAGAAACATCGCTTGTTCCAAACCCACCGGCAAATTTCTCCGGCGAAGGTCAGTTCATTGACAATCTCTCTTACTTTTTTTAATTTCTAAGGTTTCCTCTCTCTCATTGTTCCTTTCTTTGATTTTGATTCGTATTCAATTTCTTGTGCATTTTTTTTTTTTTAATTTGTGTGCTCGTGTGTTTCTGTCTGTTTGTTTTCGGAATTTAGTTTGATCGTGATTACCTCTGATCGGGATTCGATTTCTGCATACGCTATGAGTTTTGATTTTTGGTTGTTTCTGTGCAGATTGATTTTGGAAATCTTCTTTCAGGTTTGCGATTTCGGTGGTTCTTTCTTATGTTTTTCATCGTTAACTTGA

mRNA sequence

ATGAAACTGAACCATTCGATCCTCTGTACATGTGTACGGTTGGATTACGAGATCGTAAACAGAAATCTAGTCCCTCCCAAGTCCCTTTCTCTTTCTTCTCATATCACCACCGAGAGAAACATCGCTTGTTCCAAACCCACCGGCAAATTTCTCCGGCGAAGATTGATTTTGGAAATCTTCTTTCAGGTTTGCGATTTCGGTGGTTCTTTCTTATGTTTTTCATCGTTAACTTGA

Coding sequence (CDS)

ATGAAACTGAACCATTCGATCCTCTGTACATGTGTACGGTTGGATTACGAGATCGTAAACAGAAATCTAGTCCCTCCCAAGTCCCTTTCTCTTTCTTCTCATATCACCACCGAGAGAAACATCGCTTGTTCCAAACCCACCGGCAAATTTCTCCGGCGAAGATTGATTTTGGAAATCTTCTTTCAGGTTTGCGATTTCGGTGGTTCTTTCTTATGTTTTTCATCGTTAACTTGA

Protein sequence

MKLNHSILCTCVRLDYEIVNRNLVPPKSLSLSSHITTERNIACSKPTGKFLRRRLILEIFFQVCDFGGSFLCFSSLT
BLAST of CsaV3_5G006940 vs. NCBI nr
Match: KGN50534.1 (hypothetical protein Csa_5G181170 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1  MKLNHSILCTCVRLDYEIVNRNLVPPKSLSLSSHITTERNIACSKPTGKFLRRRLILEIF 60
          MKLNHSILCTCVRLDYEIVNRNLVPPKSLSLSSHITTERNIACSKPTGKFLRRRLILEIF
Sbjct: 1  MKLNHSILCTCVRLDYEIVNRNLVPPKSLSLSSHITTERNIACSKPTGKFLRRRLILEIF 60

Query: 61 FQVCDFGGSFLCFSSLT 78
          FQVCDFGGSFLCFSSLT
Sbjct: 61 FQVCDFGGSFLCFSSLT 77

BLAST of CsaV3_5G006940 vs. TrEMBL
Match: tr|A0A0A0KNV0|A0A0A0KNV0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G181170 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.4e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0

Query: 1  MKLNHSILCTCVRLDYEIVNRNLVPPKSLSLSSHITTERNIACSKPTGKFLRRRLILEIF 60
          MKLNHSILCTCVRLDYEIVNRNLVPPKSLSLSSHITTERNIACSKPTGKFLRRRLILEIF
Sbjct: 1  MKLNHSILCTCVRLDYEIVNRNLVPPKSLSLSSHITTERNIACSKPTGKFLRRRLILEIF 60

Query: 61 FQVCDFGGSFLCFSSLT 78
          FQVCDFGGSFLCFSSLT
Sbjct: 61 FQVCDFGGSFLCFSSLT 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN50534.12.1e-36100.00hypothetical protein Csa_5G181170 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KNV0|A0A0A0KNV0_CUCSA1.4e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G181170 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G006940.1CsaV3_5G006940.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G006940CmaCh04G012010Cucurbita maxima (Rimu)cmacucB0884
CsaV3_5G006940CmoCh04G012730Cucurbita moschata (Rifu)cmocucB0872
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G006940Cucumber (Gy14) v2cgybcucB182
CsaV3_5G006940Cucumber (Gy14) v2cgybcucB232
CsaV3_5G006940Cucumber (Gy14) v2cgybcucB236
CsaV3_5G006940Cucumber (Gy14) v1cgycucB059
CsaV3_5G006940Cucumber (Gy14) v1cgycucB264
CsaV3_5G006940Cucurbita maxima (Rimu)cmacucB0360
CsaV3_5G006940Cucurbita maxima (Rimu)cmacucB0883
CsaV3_5G006940Cucurbita maxima (Rimu)cmacucB0575
CsaV3_5G006940Cucurbita maxima (Rimu)cmacucB0663
CsaV3_5G006940Cucurbita maxima (Rimu)cmacucB0738
CsaV3_5G006940Cucurbita maxima (Rimu)cmacucB0805
CsaV3_5G006940Cucurbita maxima (Rimu)cmacucB1032
CsaV3_5G006940Cucurbita moschata (Rifu)cmocucB0357
CsaV3_5G006940Cucurbita moschata (Rifu)cmocucB0563
CsaV3_5G006940Cucurbita moschata (Rifu)cmocucB0648
CsaV3_5G006940Cucurbita moschata (Rifu)cmocucB0727
CsaV3_5G006940Cucurbita moschata (Rifu)cmocucB0869
CsaV3_5G006940Cucurbita moschata (Rifu)cmocucB0789
CsaV3_5G006940Cucurbita moschata (Rifu)cmocucB0873
CsaV3_5G006940Cucurbita moschata (Rifu)cmocucB1015
CsaV3_5G006940Cucurbita pepo (Zucchini)cpecucB0090
CsaV3_5G006940Cucurbita pepo (Zucchini)cpecucB0223
CsaV3_5G006940Cucurbita pepo (Zucchini)cpecucB0347
CsaV3_5G006940Cucurbita pepo (Zucchini)cpecucB0541
CsaV3_5G006940Cucurbita pepo (Zucchini)cpecucB0542
CsaV3_5G006940Cucurbita pepo (Zucchini)cpecucB0617
CsaV3_5G006940Cucurbita pepo (Zucchini)cpecucB0913
CsaV3_5G006940Wild cucumber (PI 183967)cpicucB232
CsaV3_5G006940Wild cucumber (PI 183967)cpicucB285
CsaV3_5G006940Wild cucumber (PI 183967)cpicucB293
CsaV3_5G006940Bottle gourd (USVL1VR-Ls)cuclsiB358
CsaV3_5G006940Bottle gourd (USVL1VR-Ls)cuclsiB365
CsaV3_5G006940Bottle gourd (USVL1VR-Ls)cuclsiB374
CsaV3_5G006940Bottle gourd (USVL1VR-Ls)cuclsiB387
CsaV3_5G006940Melon (DHL92) v3.5.1cucmeB365
CsaV3_5G006940Melon (DHL92) v3.5.1cucmeB370
CsaV3_5G006940Melon (DHL92) v3.5.1cucmeB421
CsaV3_5G006940Melon (DHL92) v3.6.1cucmedB359
CsaV3_5G006940Melon (DHL92) v3.6.1cucmedB362
CsaV3_5G006940Melon (DHL92) v3.6.1cucmedB414
CsaV3_5G006940Watermelon (Charleston Gray)cucwcgB367
CsaV3_5G006940Watermelon (Charleston Gray)cucwcgB403
CsaV3_5G006940Watermelon (Charleston Gray)cucwcgB408
CsaV3_5G006940Watermelon (Charleston Gray)cucwcgB422
CsaV3_5G006940Watermelon (97103) v1cucwmB391
CsaV3_5G006940Watermelon (97103) v1cucwmB416
CsaV3_5G006940Watermelon (97103) v1cucwmB448
CsaV3_5G006940Watermelon (97103) v1cucwmB455
CsaV3_5G006940Watermelon (97103) v2cucwmbB384
CsaV3_5G006940Watermelon (97103) v2cucwmbB389
CsaV3_5G006940Watermelon (97103) v2cucwmbB407
CsaV3_5G006940Watermelon (97103) v2cucwmbB428
CsaV3_5G006940Wax gourdcucwgoB505
CsaV3_5G006940Wax gourdcucwgoB507
CsaV3_5G006940Wax gourdcucwgoB525
CsaV3_5G006940Cucumber (Chinese Long) v3cuccucB170
CsaV3_5G006940Cucumber (Chinese Long) v3cuccucB196
CsaV3_5G006940Silver-seed gourdcarcucB0299
CsaV3_5G006940Silver-seed gourdcarcucB0708
CsaV3_5G006940Silver-seed gourdcarcucB0904