CsaV3_5G006720 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G006720
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 4521861 .. 4522088 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAACAATTTCAAAACTCACATTTTAGAGGATGGACCAAAGACCACAAGAGGAGTAGTGGGGCGGCGTATGGTAGACAACGACGTGGTCTAGAGATTCTGATTACAAGCAGCAATGCTACCAGCAAACCTACTGAACAAGAAGGGGAAAACATTGGAAAAGTTGAGCATAATGAGAAAACATGGGGATCAAGAAGAAACAATACCAATGTATTATTGGTTTAA

mRNA sequence

ATGGAGAAACAATTTCAAAACTCACATTTTAGAGGATGGACCAAAGACCACAAGAGGAGTAGTGGGGCGGCGTATGGTAGACAACGACGTGGTCTAGAGATTCTGATTACAAGCAGCAATGCTACCAGCAAACCTACTGAACAAGAAGGGGAAAACATTGGAAAAGTTGAGCATAATGAGAAAACATGGGGATCAAGAAGAAACAATACCAATGTATTATTGGTTTAA

Coding sequence (CDS)

ATGGAGAAACAATTTCAAAACTCACATTTTAGAGGATGGACCAAAGACCACAAGAGGAGTAGTGGGGCGGCGTATGGTAGACAACGACGTGGTCTAGAGATTCTGATTACAAGCAGCAATGCTACCAGCAAACCTACTGAACAAGAAGGGGAAAACATTGGAAAAGTTGAGCATAATGAGAAAACATGGGGATCAAGAAGAAACAATACCAATGTATTATTGGTTTAA

Protein sequence

MEKQFQNSHFRGWTKDHKRSSGAAYGRQRRGLEILITSSNATSKPTEQEGENIGKVEHNEKTWGSRRNNTNVLLV
Homology
[Close]
BLAST of CsaV3_5G006720 vs. NCBI nr
Match: KGN50515.1 (hypothetical protein Csa_5G180290 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 3.3e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MEKQFQNSHFRGWTKDHKRSSGAAYGRQRRGLEILITSSNATSKPTEQEGENIGKVEHNE 60
          MEKQFQNSHFRGWTKDHKRSSGAAYGRQRRGLEILITSSNATSKPTEQEGENIGKVEHNE
Sbjct: 1  MEKQFQNSHFRGWTKDHKRSSGAAYGRQRRGLEILITSSNATSKPTEQEGENIGKVEHNE 60

Query: 61 KTWGSRRNNTNVLLV 76
          KTWGSRRNNTNVLLV
Sbjct: 61 KTWGSRRNNTNVLLV 75

[Close]
BLAST of CsaV3_5G006720 vs. TrEMBL
Match: tr|A0A0A0KLL2|A0A0A0KLL2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180290 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.2e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MEKQFQNSHFRGWTKDHKRSSGAAYGRQRRGLEILITSSNATSKPTEQEGENIGKVEHNE 60
          MEKQFQNSHFRGWTKDHKRSSGAAYGRQRRGLEILITSSNATSKPTEQEGENIGKVEHNE
Sbjct: 1  MEKQFQNSHFRGWTKDHKRSSGAAYGRQRRGLEILITSSNATSKPTEQEGENIGKVEHNE 60

Query: 61 KTWGSRRNNTNVLLV 76
          KTWGSRRNNTNVLLV
Sbjct: 61 KTWGSRRNNTNVLLV 75

The following BLAST results are available for this feature:
BLAST of CsaV3_5G006720 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50515.13.3e-34100.00hypothetical protein Csa_5G180290 [Cucumis sativus][more]
BLAST of CsaV3_5G006720 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G006720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G006720 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KLL2|A0A0A0KLL2_CUCSA2.2e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180290 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G006720.1CsaV3_5G006720.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..49

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G006720CSPI05G09310Wild cucumber (PI 183967)cpicucB285
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G006720Cucurbita moschata (Rifu)cmocucB0357
CsaV3_5G006720Cucurbita moschata (Rifu)cmocucB0789
CsaV3_5G006720Cucurbita moschata (Rifu)cmocucB0872
CsaV3_5G006720Cucurbita moschata (Rifu)cmocucB0873
CsaV3_5G006720Cucurbita moschata (Rifu)cmocucB1015
CsaV3_5G006720Cucurbita pepo (Zucchini)cpecucB0090
CsaV3_5G006720Cucurbita pepo (Zucchini)cpecucB0223
CsaV3_5G006720Cucurbita pepo (Zucchini)cpecucB0541
CsaV3_5G006720Cucurbita pepo (Zucchini)cpecucB0542
CsaV3_5G006720Cucurbita pepo (Zucchini)cpecucB0617
CsaV3_5G006720Wild cucumber (PI 183967)cpicucB232
CsaV3_5G006720Wild cucumber (PI 183967)cpicucB293
CsaV3_5G006720Bottle gourd (USVL1VR-Ls)cuclsiB365
CsaV3_5G006720Bottle gourd (USVL1VR-Ls)cuclsiB374
CsaV3_5G006720Bottle gourd (USVL1VR-Ls)cuclsiB387
CsaV3_5G006720Melon (DHL92) v3.5.1cucmeB365
CsaV3_5G006720Melon (DHL92) v3.5.1cucmeB370
CsaV3_5G006720Melon (DHL92) v3.5.1cucmeB421
CsaV3_5G006720Melon (DHL92) v3.6.1cucmedB359
CsaV3_5G006720Melon (DHL92) v3.6.1cucmedB362
CsaV3_5G006720Melon (DHL92) v3.6.1cucmedB414
CsaV3_5G006720Watermelon (Charleston Gray)cucwcgB367
CsaV3_5G006720Watermelon (Charleston Gray)cucwcgB408
CsaV3_5G006720Watermelon (97103) v1cucwmB391
CsaV3_5G006720Watermelon (97103) v1cucwmB448
CsaV3_5G006720Watermelon (97103) v2cucwmbB389
CsaV3_5G006720Watermelon (97103) v2cucwmbB428
CsaV3_5G006720Wax gourdcucwgoB507
CsaV3_5G006720Wax gourdcucwgoB525
CsaV3_5G006720Cucumber (Chinese Long) v3cuccucB170
CsaV3_5G006720Cucumber (Chinese Long) v3cuccucB196
CsaV3_5G006720Silver-seed gourdcarcucB0299
CsaV3_5G006720Silver-seed gourdcarcucB0708
CsaV3_5G006720Silver-seed gourdcarcucB0904
CsaV3_5G006720Cucumber (Gy14) v2cgybcucB182
CsaV3_5G006720Cucumber (Gy14) v2cgybcucB232
CsaV3_5G006720Cucumber (Gy14) v2cgybcucB236
CsaV3_5G006720Cucumber (Gy14) v1cgycucB059
CsaV3_5G006720Cucumber (Gy14) v1cgycucB264
CsaV3_5G006720Cucurbita maxima (Rimu)cmacucB0360
CsaV3_5G006720Cucurbita maxima (Rimu)cmacucB0883
CsaV3_5G006720Cucurbita maxima (Rimu)cmacucB0884
CsaV3_5G006720Cucurbita maxima (Rimu)cmacucB0805