CsaV3_5G005850 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G005850
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 3863213 .. 3863982 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATATAACTTGCATCCCTTTTCTTCCTTTCTTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTTTTCCTCTTTTCTCTCTCTCTCTCTCTCCGATTTCAATTCTCCGAATTCACAGCCAAGCCAAAGGGTTTAGCTTCCATTACTTCTCTGGTTTTAACTCTCTTTTCCGGTTTTCAAGGTTGGTAGTCAAACTCTCTTCCTTCTTCTGTCGTCTTTCCTTTAAATGGTCTTTTATTTAATTTTGTTCTTCCTTCCGGTTTTTTTTTTCTTTCTTTCTAATCGGTTCGGATTTGGATCCTTCCTCACCTGCTTTTTCTTTATGCTTCTTCTTCTTGCTTGATCTTTTGCCTTTTCTTCGATTTTAATGCTTTAATTTTAAATTTAACTGTGACTTTTGGGAGGTCCAGCTCTCTCTTTCTTTCAAATTTTGAGCCTTGATTATTCAAATTGGTGTTTCATTTCTCAAGTGGCCTGCTATATAATTTCGTTTCTGTTAATTATGGTTAACATAGGCCAGAAATTTGGTGTTGAAAGCTTCTTGTTTGAATTATGTTTTTGTTTCCCATTTGAGGCTGGTTCTCTACTTGTGAAATGTTACTTATATGTGGGGAGCTGTTCTTTCCCTTTTTTTTTTCTTTTGAATTTTTATAGTGGTCGTTGGTCGTTGGTGGGTTTTCTTTTTTTCTTTTTCCTTTTTCCTTTTTCTCTGCTAATGTTGTTGTTATATCTTTTTAACCTTAGGGACTTCTGGATATTGTTGAAATAG

mRNA sequence

ATGTATATAACTTGCATCCCTTTTCTTCCTTTCTTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTTTTCCTCTTTTCTCTCTCTCTCTCTCTCCGATTTCAATTCTCCGAATTCACAGCCAAGCCAAAGGGTTTAGCTTCCATTACTTCTCTGGTTTTAACTCTCTTTTCCGGTTTTCAAGGGACTTCTGGATATTGTTGAAATAG

Coding sequence (CDS)

ATGTATATAACTTGCATCCCTTTTCTTCCTTTCTTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTTTTCCTCTTTTCTCTCTCTCTCTCTCTCCGATTTCAATTCTCCGAATTCACAGCCAAGCCAAAGGGTTTAGCTTCCATTACTTCTCTGGTTTTAACTCTCTTTTCCGGTTTTCAAGGGACTTCTGGATATTGTTGAAATAG

Protein sequence

MYITCIPFLPFFLLLLLLFLLLFPLFSLSLSPISILRIHSQAKGFSFHYFSGFNSLFRFSRDFWILLK
Homology
[Close]
BLAST of CsaV3_5G005850 vs. NCBI nr
Match: KGN50427.1 (hypothetical protein Csa_5G173540 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-14
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MYITCIPXXXXXXXXXXXXXXXXXXXXXXXSPISILRIHSQAKGFSFHYFSGFNSLFRFS 60
          MYITCIPXXXXXXXXXXXXXXXXXXXXXXXSPISILRIHSQAKGFSFHYFSGFNSLFRFS
Sbjct: 1  MYITCIPXXXXXXXXXXXXXXXXXXXXXXXSPISILRIHSQAKGFSFHYFSGFNSLFRFS 60

Query: 61 RDFWILLK 69
          RDFWILLK
Sbjct: 61 RDFWILLK 68

[Close]
BLAST of CsaV3_5G005850 vs. TrEMBL
Match: tr|A0A0A0KPV5|A0A0A0KPV5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G173540 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-14
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MYITCIPXXXXXXXXXXXXXXXXXXXXXXXSPISILRIHSQAKGFSFHYFSGFNSLFRFS 60
          MYITCIPXXXXXXXXXXXXXXXXXXXXXXXSPISILRIHSQAKGFSFHYFSGFNSLFRFS
Sbjct: 1  MYITCIPXXXXXXXXXXXXXXXXXXXXXXXSPISILRIHSQAKGFSFHYFSGFNSLFRFS 60

Query: 61 RDFWILLK 69
          RDFWILLK
Sbjct: 61 RDFWILLK 68

The following BLAST results are available for this feature:
BLAST of CsaV3_5G005850 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50427.12.0e-14100.00hypothetical protein Csa_5G173540 [Cucumis sativus][more]
BLAST of CsaV3_5G005850 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G005850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G005850 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KPV5|A0A0A0KPV5_CUCSA1.3e-14100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G173540 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G005850.1CsaV3_5G005850.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G005850Cucumber (Chinese Long) v3cuccucB122
CsaV3_5G005850Silver-seed gourdcarcucB0752
CsaV3_5G005850Silver-seed gourdcarcucB0776
CsaV3_5G005850Cucumber (Gy14) v2cgybcucB232
CsaV3_5G005850Cucumber (Gy14) v1cgycucB264
CsaV3_5G005850Cucumber (Gy14) v1cgycucB395
CsaV3_5G005850Cucurbita maxima (Rimu)cmacucB0341
CsaV3_5G005850Cucurbita maxima (Rimu)cmacucB0731
CsaV3_5G005850Cucurbita moschata (Rifu)cmocucB0336
CsaV3_5G005850Cucurbita moschata (Rifu)cmocucB0719
CsaV3_5G005850Cucurbita pepo (Zucchini)cpecucB0224
CsaV3_5G005850Cucurbita pepo (Zucchini)cpecucB0916
CsaV3_5G005850Wild cucumber (PI 183967)cpicucB285
CsaV3_5G005850Bottle gourd (USVL1VR-Ls)cuclsiB345
CsaV3_5G005850Bottle gourd (USVL1VR-Ls)cuclsiB405
CsaV3_5G005850Melon (DHL92) v3.5.1cucmeB360
CsaV3_5G005850Melon (DHL92) v3.5.1cucmeB414
CsaV3_5G005850Melon (DHL92) v3.6.1cucmedB352
CsaV3_5G005850Watermelon (Charleston Gray)cucwcgB385
CsaV3_5G005850Watermelon (97103) v1cucwmB427
CsaV3_5G005850Watermelon (97103) v1cucwmB436
CsaV3_5G005850Watermelon (97103) v2cucwmbB351
CsaV3_5G005850Wax gourdcucwgoB456
CsaV3_5G005850Wax gourdcucwgoB466