CsaV3_5G005330 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G005330
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Leucine-rich repeat receptor protein kinase
Location	chr5 : 3407075 .. 3408082 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAATAATTCAAGGAAACGAAAGAAAAATGGATGTTTCGGAGGCTACAATCCTCCAATCTTAAGGACAACAACAAAGGAAGAGAACTTAACACTTCCATCAAATTTGATGCTTGTGAAAAGTTGGTCTCACTCAACCAAAGAAGTTGTAAGGATGATAGGTGATACATCCATTCAACATCATCATTATATTGAACCCAATTTGGATTTAAGTTGGAATGACTTCGACTATACTCAAATCCCAAGCTTTTTAGGTTCAATGGTTGAATTAACATATCTTAATCTTTCTCATGCATCCTTTGCAGGAAAAGTTCCTCCTCATTTAGGAAATCTGAGTATAGTCGAAGTCATTCCAACTTAAATCCAAATAATTTAAGTATTTCAACTCAAGCAAACTAGAATCAATAGAATTATTGCTATACAAAGGTCCTGATACCGATAAGAAGAGTAAGTCGACCTGAATATCCCATCGAAGATCAATGATAGTAACATGTCCAGTGGTTTGATTGCAACCCACTCCTTTCCAATTACAGCAATCAGTTCCATTATTCCAGGAAGCCAATCGAAGAGAAGGATCATAATAAAAACTATTCTTGAATTGAAGAAGAGCTTCACGCTCCTTGTGGATGCAAGCTGCTGCAGTTATGGAGAAACAAAAATGGAGGTGTAGAAGAAGCAGTATCATCCACAACAATAATACAATTGAACTTTTTTCTGAAACTAATTTCCACATTTTGCTTACAATTGAATTGAAAGAACTGAGTAGTGTATGAAATTTGGCAATGAAAAGCAATAATATATATACTACTTTTAAATTTTCTTTACCTAGTCGTGATCATGTCTTTCTTTAATAATTTCTTTAAAATATTTTATGTTTAAAATTTTAAAATTTATTTATAACTTGTTTCAACTTTGATAGCTGGTTGAATTTGGAATACTTGAAAATGAAATTGATGATGATCATATTATAAAGAATGTTATCCAAGTCAGTCCTACATCAGCTTGA

mRNA sequence

ATGAAGAATAATTCAAGGAAACGAAAGAAAAATGGATGTTTCGGAGGCTACAATCCTCCAATCTTAAGGACAACAACAAAGGAAGAGAACTTAACACTTCCATCAAATTTGATGCTTGTGAAAAGTTGGTCTCACTCAACCAAAGAAGTTGTAAGGATGATAGGTGATACATCCATTCAACATCATCATTATATTGAACCCAATTTGGATTTAAGTTGGAATGACTTCGACTATACTCAAATCCCAAGCTTTTTAGGTTCAATGGTTGAATTAACATATCTTAATCTTTCTCATGCATCCTTTGCAGGAAAAGTTCCTCCTCATTTAGGAAATCTGAGTATAGTCGAACTGGTTGAATTTGGAATACTTGAAAATGAAATTGATGATGATCATATTATAAAGAATGTTATCCAAGTCAGTCCTACATCAGCTTGA

Coding sequence (CDS)

ATGAAGAATAATTCAAGGAAACGAAAGAAAAATGGATGTTTCGGAGGCTACAATCCTCCAATCTTAAGGACAACAACAAAGGAAGAGAACTTAACACTTCCATCAAATTTGATGCTTGTGAAAAGTTGGTCTCACTCAACCAAAGAAGTTGTAAGGATGATAGGTGATACATCCATTCAACATCATCATTATATTGAACCCAATTTGGATTTAAGTTGGAATGACTTCGACTATACTCAAATCCCAAGCTTTTTAGGTTCAATGGTTGAATTAACATATCTTAATCTTTCTCATGCATCCTTTGCAGGAAAAGTTCCTCCTCATTTAGGAAATCTGAGTATAGTCGAACTGGTTGAATTTGGAATACTTGAAAATGAAATTGATGATGATCATATTATAAAGAATGTTATCCAAGTCAGTCCTACATCAGCTTGA

Protein sequence

MKNNSRKRKKNGCFGGYNPPILRTTTKEENLTLPSNLMLVKSWSHSTKEVVRMIGDTSIQHHHYIEPNLDLSWNDFDYTQIPSFLGSMVELTYLNLSHASFAGKVPPHLGNLSIVELVEFGILENEIDDDHIIKNVIQVSPTSA

Homology

[Close]

BLAST of CsaV3_5G005330 vs. NCBI nr
Match: XP_016903706.1 (PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 5.2e-12
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 56  DTSIQHHHYIEPNLDLSWNDFDYTQIPSFLGSMVELTYLNLSHASFAGKVPPHLGNLSIV 115
           D+S+    Y+   LDLS N F+YTQIPSFLGSM ELTYLNLS A F+GK+PPHLGNL+ +
Sbjct: 113 DSSLLELKYLN-YLDLSGNHFNYTQIPSFLGSMEELTYLNLSFALFSGKLPPHLGNLTKL 172

Query: 116 ELVEFGILENEIDDD 131
            +++      E +DD
Sbjct: 173 AVLDLSFNWPETNDD 186

[Close]

BLAST of CsaV3_5G005330 vs. NCBI nr
Match: XP_016903721.1 (PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 1.5e-11
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 69  LDLSWNDFDYTQIPSFLGSMVELTYLNLSHASFAGKVPPHLGNLSIVEL--VEFGILENE 128
           LDLS NDF+YTQIP+FLGSMVELTYLNLS   F+ K+ PHLGNL+ +E   + F +LE  
Sbjct: 104 LDLSGNDFNYTQIPNFLGSMVELTYLNLSRTFFSNKISPHLGNLTKLETLDISFNLLETN 163

Query: 129 IDDDHI 133
            D + I
Sbjct: 164 GDVEWI 169

[Close]

BLAST of CsaV3_5G005330 vs. NCBI nr
Match: KGN50333.1 (Serine/threonine-protein kinase bri1 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 2.6e-11
Identity = 38/64 (59.38%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 56  DTSIQHHHYIEPNLDLSWNDFDYTQIPSFLGSMVELTYLNLSHASFAGKVPPHLGNLSIV 115
           D+S+    Y+  +LDLS N F++TQIP+FLGSM+ELTYLNLS  S  GK+PPHLGNLS +
Sbjct: 103 DSSLLELKYLN-HLDLSGNYFNHTQIPNFLGSMLELTYLNLSRTSLIGKIPPHLGNLSKL 162

Query: 116 ELVE 120
           E+++
Sbjct: 163 EILD 165

[Close]

BLAST of CsaV3_5G005330 vs. NCBI nr
Match: XP_022149420.1 (probable inactive leucine-rich repeat receptor kinase XIAO [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 4.4e-11
Identity = 36/69 (52.17%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 56  DTSIQHHHYIEPNLDLSWNDFDYTQIPSFLGSMVELTYLNLSHASFAGKVPPHLGNLSIV 115
           D+S+    Y+   LDLSWN F ++QIP+F GSM+EL YLNLS ASF+GKVPPH+GNL+ +
Sbjct: 105 DSSLLEFKYLN-YLDLSWNFFHHSQIPNFFGSMLELRYLNLSAASFSGKVPPHIGNLTKL 164

Query: 116 ELVEFGILE 125
            +++   ++
Sbjct: 165 VVLDLSFID 172

[Close]

BLAST of CsaV3_5G005330 vs. NCBI nr
Match: XP_008437704.1 (PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 56  DTSIQHHHYIEPNLDLSWNDFDYTQIPSFLGSMVELTYLNLSHASFAGKVPPHLGNLS 114
           D+S+    Y+   LDLS N F++TQIPSFLGSMVELTYLNLS+   +GKVPPHLGNL+
Sbjct: 92  DSSLLELKYLN-YLDLSGNHFNFTQIPSFLGSMVELTYLNLSNTIISGKVPPHLGNLT 148

[Close]

BLAST of CsaV3_5G005330 vs. TAIR10
Match: AT2G34930.1 (disease resistance family protein / LRR family protein)

HSP 1 Score: 61.2 bits (147), Expect = 5.9e-10
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 69  LDLSWNDFDYTQIPSFLGSMVELTYLNLSHASFAGKVPPHLGNLSIVELVE 120
           LDLS NDF+  +IP F+G +V L YLNLS +SF+G++P  LGNLS +E ++
Sbjct: 117 LDLSSNDFNELEIPEFIGQIVSLRYLNLSSSSFSGEIPTSLGNLSKLESLD 167

[Close]

BLAST of CsaV3_5G005330 vs. Swiss-Prot
Match: sp|Q6JN47|EIX1_SOLLC (Receptor-like protein EIX1 OS=Solanum lycopersicum OX=4081 GN=EIX1 PE=2 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 5.0e-06
Identity = 29/76 (38.16%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 69  LDLSWNDFDYTQIPSFLGSMVELTYLNLSHASFAGKVPPHLGNLSIVELVEFGILENEID 128
           LDLS N+F+ ++IP F+GS+  L YLNLS + F+G +P    NL+ +  ++ G  EN + 
Sbjct: 123 LDLSVNEFERSEIPRFIGSLKRLEYLNLSASFFSGVIPIQFQNLTSLRTLDLG--ENNL- 182

Query: 129 DDHIIKNVIQVSPTSA 145
              I+K++  +S  S+
Sbjct: 183 ---IVKDLRWLSHLSS 192

[Close]

BLAST of CsaV3_5G005330 vs. TrEMBL
Match: tr|A0A1S4E635|A0A1S4E635_CUCME (probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Cucumis melo OX=3656 GN=LOC107990325 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.5e-12
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 0


Query: 56  DTSIQHHHYIEPNLDLSWNDFDYTQIPSFLGSMVELTYLNLSHASFAGKVPPHLGNLSIV 115
           D+S+    Y+   LDLS N F+YTQIPSFLGSM ELTYLNLS A F+GK+PPHLGNL+ +
Sbjct: 113 DSSLLELKYLN-YLDLSGNHFNYTQIPSFLGSMEELTYLNLSFALFSGKLPPHLGNLTKL 172

Query: 116 ELVEFGILENEIDDD 131
            +++      E +DD
Sbjct: 173 AVLDLSFNWPETNDD 186

[Close]

BLAST of CsaV3_5G005330 vs. TrEMBL
Match: tr|A0A1S4E650|A0A1S4E650_CUCME (probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Cucumis melo OX=3656 GN=LOC103504704 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.0e-11
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 69  LDLSWNDFDYTQIPSFLGSMVELTYLNLSHASFAGKVPPHLGNLSIVEL--VEFGILENE 128
           LDLS NDF+YTQIP+FLGSMVELTYLNLS   F+ K+ PHLGNL+ +E   + F +LE  
Sbjct: 104 LDLSGNDFNYTQIPNFLGSMVELTYLNLSRTFFSNKISPHLGNLTKLETLDISFNLLETN 163

Query: 129 IDDDHI 133
            D + I
Sbjct: 164 GDVEWI 169

[Close]

BLAST of CsaV3_5G005330 vs. TrEMBL
Match: tr|A0A0A0KL22|A0A0A0KL22_CUCSA (Serine/threonine-protein kinase bri1 OS=Cucumis sativus OX=3659 GN=Csa_5G167740 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.7e-11
Identity = 38/64 (59.38%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 56  DTSIQHHHYIEPNLDLSWNDFDYTQIPSFLGSMVELTYLNLSHASFAGKVPPHLGNLSIV 115
           D+S+    Y+  +LDLS N F++TQIP+FLGSM+ELTYLNLS  S  GK+PPHLGNLS +
Sbjct: 103 DSSLLELKYLN-HLDLSGNYFNHTQIPNFLGSMLELTYLNLSRTSLIGKIPPHLGNLSKL 162

Query: 116 ELVE 120
           E+++
Sbjct: 163 EILD 165

[Close]

BLAST of CsaV3_5G005330 vs. TrEMBL
Match: tr|A0A1S3AV79|A0A1S3AV79_CUCME (probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Cucumis melo OX=3656 GN=LOC103483049 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.5e-11
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 56  DTSIQHHHYIEPNLDLSWNDFDYTQIPSFLGSMVELTYLNLSHASFAGKVPPHLGNLS 114
           D+S+    Y+   LDLS N F++TQIPSFLGSMVELTYLNLS+   +GKVPPHLGNL+
Sbjct: 92  DSSLLELKYLN-YLDLSGNHFNFTQIPSFLGSMVELTYLNLSNTIISGKVPPHLGNLT 148

[Close]

BLAST of CsaV3_5G005330 vs. TrEMBL
Match: tr|A0A2C9W128|A0A2C9W128_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G014400 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.2e-10
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 59  IQHHHYIEPNLDLSWNDFDYTQIPSFLGSMVELTYLNLSHASFAGKVPPHLGNLSIVELV 118
           ++H  Y    LDLS NDFD +QIP F+GS   L YLNLSHASF+G +PPHLGN+S +  +
Sbjct: 125 LEHLEY----LDLSLNDFDGSQIPDFIGSFRSLNYLNLSHASFSGIIPPHLGNISSLHFL 184

Query: 119 EFGILENEIDDDHII 134
           +   L    D DH++
Sbjct: 185 D---LHAFSDSDHLL 192

The following BLAST results are available for this feature:

BLAST of CsaV3_5G005330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903706.1	5.2e-12	56.00	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 ...	[more]
XP_016903721.1	1.5e-11	60.61	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 ...	[more]
KGN50333.1	2.6e-11	59.38	Serine/threonine-protein kinase bri1 [Cucumis sativus]	[more]
XP_022149420.1	4.4e-11	52.17	probable inactive leucine-rich repeat receptor kinase XIAO [Momordica charantia]	[more]
XP_008437704.1	1.3e-10	65.52	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [...	[more]

BLAST of CsaV3_5G005330 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G34930.1	5.9e-10	54.90	disease resistance family protein / LRR family protein	[more]

BLAST of CsaV3_5G005330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6JN47\|EIX1_SOLLC	5.0e-06	38.16	Receptor-like protein EIX1 OS=Solanum lycopersicum OX=4081 GN=EIX1 PE=2 SV=2	[more]

BLAST of CsaV3_5G005330 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E635\|A0A1S4E635_CUCME	3.5e-12	56.00	probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Cucumis ...	[more]
tr\|A0A1S4E650\|A0A1S4E650_CUCME	1.0e-11	60.61	probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Cucumis ...	[more]
tr\|A0A0A0KL22\|A0A0A0KL22_CUCSA	1.7e-11	59.38	Serine/threonine-protein kinase bri1 OS=Cucumis sativus OX=3659 GN=Csa_5G167740 ...	[more]
tr\|A0A1S3AV79\|A0A1S3AV79_CUCME	8.5e-11	65.52	probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Cucumis m...	[more]
tr\|A0A2C9W128\|A0A2C9W128_MANES	3.2e-10	50.67	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G014400 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G005330.1	CsaV3_5G005330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 28..130 e-value: 5.2E-10 score: 41.0
None	No IPR available	PANTHER	PTHR27004	FAMILY NOT NAMED	coord: 68..132
None	No IPR available	PANTHER	PTHR27004:SF91	SUBFAMILY NOT NAMED	coord: 68..132
None	No IPR available	SUPERFAMILY	SSF52047	RNI-like	coord: 69..130

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G005330	Silver-seed gourd	carcucB0752
CsaV3_5G005330	Silver-seed gourd	carcucB1081
CsaV3_5G005330	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G005330	Cucumber (Gy14) v1	cgycucB183
CsaV3_5G005330	Cucumber (Gy14) v1	cgycucB395
CsaV3_5G005330	Cucurbita maxima (Rimu)	cmacucB0341
CsaV3_5G005330	Cucurbita maxima (Rimu)	cmacucB0731
CsaV3_5G005330	Cucurbita moschata (Rifu)	cmocucB0336
CsaV3_5G005330	Cucurbita moschata (Rifu)	cmocucB0719
CsaV3_5G005330	Cucurbita pepo (Zucchini)	cpecucB0224
CsaV3_5G005330	Cucurbita pepo (Zucchini)	cpecucB0916
CsaV3_5G005330	Wild cucumber (PI 183967)	cpicucB285
CsaV3_5G005330	Bottle gourd (USVL1VR-Ls)	cuclsiB345
CsaV3_5G005330	Bottle gourd (USVL1VR-Ls)	cuclsiB405
CsaV3_5G005330	Melon (DHL92) v3.5.1	cucmeB360
CsaV3_5G005330	Melon (DHL92) v3.5.1	cucmeB414
CsaV3_5G005330	Melon (DHL92) v3.6.1	cucmedB352
CsaV3_5G005330	Watermelon (Charleston Gray)	cucwcgB385
CsaV3_5G005330	Watermelon (97103) v1	cucwmB427
CsaV3_5G005330	Watermelon (97103) v1	cucwmB440
CsaV3_5G005330	Watermelon (97103) v2	cucwmbB351
CsaV3_5G005330	Wax gourd	cucwgoB449
CsaV3_5G005330	Wax gourd	cucwgoB454
CsaV3_5G005330	Wax gourd	cucwgoB469