CsaV3_5G005230 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G005230
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 3357477 .. 3359230 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTTTCTAAAGTCATCTTGTATTAGTGGGCTATAAATACTACTCATATAATAACTTTTAAAATGCACAAAAATAAGAAGTATATAAAAGAAAAAAAAAATGGCTTCCAAGAAGCACTTCTCAACAATAGTTGCTATTGTCTTTAGTCTTCTGCTTCTCTTCACTACCACTGTCACCTCAAAAAGGCATTTGCTTACATCTCCTAATGTTAATGGTATACTGTTTTCATCCCCCAACTCAAATTTCTAATTTCCAAATTTAAATCATATTTACCATATTTGCACCAACATATTCATTGTGTATAAATATATTGTTGATATTTATTTCATACATTTCATTTAAGTTCAAGAAAAAATTATACAGCCCATGTTTTTATTTAATACTCAAATCTGTTTTAGGTTTTTATTAGTTTAACAGTTCCTCATATTTTGGTCCTTCAATGAACATTCAAATTTGTTTCCAATGGATGACAAGAGTTGGGAAAAGTCCAAGAAAAGCGTAACGGAGATTTTTCTGACGAAAACTGCTTTTCGGGAAAGCCTTTTCCAACTCTGAAACACAAAGTAATGTTGGGAAATTTTTTACAAACATTTTGGACTCTACAGAAAAACGTCGAGGCCAAATTTTGTACATTAGAAAATTAATCGACCATTCGTTGATAGGTTTCGTTTAAAAACAAGTTATGATTCGTCCAAGTACTTTATAGTAATTAAATTCATATATTCTAGTGATCTTTACGTCTAAACCAATTATTCCGATTAAATTTATCCCATGTCTTGAGCTTGATTTGCTTTTTTGAACTCGAGAAGGAATAACAGATCAGGACAGAAAGAGAGCAGTAAAAGTAGTTCACATTCTTCTTTCAAATTATCTAGAGCCACACATTTGTTTTTAAGAATTAAGCTTAGATGAACACGATGCTCCTTCGATTTTTTTAATTTATTGCTTATTTTTTAGGAGTTGTTTTAAAAATCATGTCCATATGTTTGATAGTCTACATCAATCATTTCCGTAAAATTTTGACTAAAAATTCAAATGTTTAAGCATGAAGATTTGAATTACTTCCATCTCTAACAGAAGAATGTTGGTTAATTATGGTTGAAGTTATGCCCTTGTTATAAATAAAAAAAATTAAGAAAGAAGTATATAACATACAATAAATAACCTTAAGAACACAAAATTAATTTATTATGTTTTTTCTTCTTTTTTGTTAAGGACAACGATATGGAACTCAGGAAGCTTTGGAGAATCCATGGGACCCCGGCTCCTACGGTAGTCAATGGGGTGGTGGATGGGGAGGAGGAGGACCTCAAAAGCAAACATCTCAGCAAAAGGAGAAAGTTAAAACTTAGAGAAAAATATATGGACAATAATATATGAATATAGTGTCCTAAAGTGTAATATAAACTACAAGTATCTAAGGGCCTCTTTGAAATTTCTTTTCAAGTGCTTTAGAAGAAAAACTACTTTGAGGTATAAACCCTTGAAACGTCAGTTCAAACAGATTATCTAAAATGTGTTTAAGAATAATAAGTGCAAATGTAGTTTGTAAGTAATAGAATTAGTGGTTGATTTCTATGCTATTCGCTTTTGTTTAGGAGTTAGTGGTCTTGGCTTAATGTGATTGATCAAGGGAGAATTGTAATTAGGTTGGGACGAGTACTTGTGGTCTATGTATGTATATAGTTAGTGTGTTAGTGGTCTGTTTTTTATGTAATGTTTCCATTTCAATAAATATAGATGTGATCATATA

mRNA sequence

ATGGCTTCCAAGAAGCACTTCTCAACAATAGTTGCTATTGTCTTTAGTCTTCTGCTTCTCTTCACTACCACTGTCACCTCAAAAAGGCATTTGCTTACATCTCCTAATGTTAATGGACAACGATATGGAACTCAGGAAGCTTTGGAGAATCCATGGGACCCCGGCTCCTACGGTAGTCAATGGGGTGGTGGATGGGGAGGAGGAGGACCTCAAAAGCAAACATCTCAGCAAAAGGAGAAAGTTAAAACTTAG

Coding sequence (CDS)

ATGGCTTCCAAGAAGCACTTCTCAACAATAGTTGCTATTGTCTTTAGTCTTCTGCTTCTCTTCACTACCACTGTCACCTCAAAAAGGCATTTGCTTACATCTCCTAATGTTAATGGACAACGATATGGAACTCAGGAAGCTTTGGAGAATCCATGGGACCCCGGCTCCTACGGTAGTCAATGGGGTGGTGGATGGGGAGGAGGAGGACCTCAAAAGCAAACATCTCAGCAAAAGGAGAAAGTTAAAACTTAG

Protein sequence

MASKKHFSTIVAIVFSLLLLFTTTVTSKRHLLTSPNVNGQRYGTQEALENPWDPGSYGSQWGGGWGGGGPQKQTSQQKEKVKT
Homology
[Close]
BLAST of CsaV3_5G005230 vs. NCBI nr
Match: KGN50354.1 (hypothetical protein Csa_5G168910 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-29
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MASKKHFSTIVAIVFSLLLLFTTTVTSKRHLLTSPNVNGQRYGTQEALENPWDPGSYGSQ 60
          MASKKHFSTIVAIVFSLLLLFTTTVTSKRHLLTSPNVNGQRYGTQEALENPWDPGSYGSQ
Sbjct: 1  MASKKHFSTIVAIVFSLLLLFTTTVTSKRHLLTSPNVNGQRYGTQEALENPWDPGSYGSQ 60

Query: 61 XXXXXXXXXXQKQTSQQKEKVKT 84
          XXXXXXXXXXQKQTSQQKEKVKT
Sbjct: 61 XXXXXXXXXXQKQTSQQKEKVKT 83

[Close]
BLAST of CsaV3_5G005230 vs. TrEMBL
Match: tr|A0A0A0KN68|A0A0A0KN68_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168910 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.1e-30
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MASKKHFSTIVAIVFSLLLLFTTTVTSKRHLLTSPNVNGQRYGTQEALENPWDPGSYGSQ 60
          MASKKHFSTIVAIVFSLLLLFTTTVTSKRHLLTSPNVNGQRYGTQEALENPWDPGSYGSQ
Sbjct: 1  MASKKHFSTIVAIVFSLLLLFTTTVTSKRHLLTSPNVNGQRYGTQEALENPWDPGSYGSQ 60

Query: 61 XXXXXXXXXXQKQTSQQKEKVKT 84
          XXXXXXXXXXQKQTSQQKEKVKT
Sbjct: 61 XXXXXXXXXXQKQTSQQKEKVKT 83

The following BLAST results are available for this feature:
BLAST of CsaV3_5G005230 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50354.11.2e-29100.00hypothetical protein Csa_5G168910 [Cucumis sativus][more]
BLAST of CsaV3_5G005230 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G005230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G005230 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KN68|A0A0A0KN68_CUCSA8.1e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168910 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G005230.1CsaV3_5G005230.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..83

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G005230CSPI05G07800Wild cucumber (PI 183967)cpicucB285
CsaV3_5G005230Cucsa.129020Cucumber (Gy14) v1cgycucB183
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G005230Cucumber (Chinese Long) v3cuccucB173
CsaV3_5G005230Silver-seed gourdcarcucB0752
CsaV3_5G005230Silver-seed gourdcarcucB1081
CsaV3_5G005230Cucumber (Gy14) v2cgybcucB184
CsaV3_5G005230Cucumber (Gy14) v2cgybcucB232
CsaV3_5G005230Cucumber (Gy14) v1cgycucB106
CsaV3_5G005230Cucumber (Gy14) v1cgycucB395
CsaV3_5G005230Cucurbita maxima (Rimu)cmacucB0341
CsaV3_5G005230Cucurbita maxima (Rimu)cmacucB0405
CsaV3_5G005230Cucurbita maxima (Rimu)cmacucB0731
CsaV3_5G005230Cucurbita maxima (Rimu)cmacucB0882
CsaV3_5G005230Cucurbita moschata (Rifu)cmocucB0336
CsaV3_5G005230Cucurbita moschata (Rifu)cmocucB0402
CsaV3_5G005230Cucurbita moschata (Rifu)cmocucB0719
CsaV3_5G005230Cucurbita moschata (Rifu)cmocucB0871
CsaV3_5G005230Cucurbita pepo (Zucchini)cpecucB0224
CsaV3_5G005230Cucurbita pepo (Zucchini)cpecucB0540
CsaV3_5G005230Cucurbita pepo (Zucchini)cpecucB0916
CsaV3_5G005230Wild cucumber (PI 183967)cpicucB234
CsaV3_5G005230Bottle gourd (USVL1VR-Ls)cuclsiB345
CsaV3_5G005230Bottle gourd (USVL1VR-Ls)cuclsiB405
CsaV3_5G005230Bottle gourd (USVL1VR-Ls)cuclsiB408
CsaV3_5G005230Melon (DHL92) v3.5.1cucmeB360
CsaV3_5G005230Melon (DHL92) v3.5.1cucmeB414
CsaV3_5G005230Melon (DHL92) v3.5.1cucmeB420
CsaV3_5G005230Melon (DHL92) v3.6.1cucmedB352
CsaV3_5G005230Melon (DHL92) v3.6.1cucmedB413
CsaV3_5G005230Watermelon (Charleston Gray)cucwcgB385
CsaV3_5G005230Watermelon (Charleston Gray)cucwcgB426
CsaV3_5G005230Watermelon (97103) v1cucwmB420
CsaV3_5G005230Watermelon (97103) v1cucwmB427
CsaV3_5G005230Watermelon (97103) v1cucwmB440
CsaV3_5G005230Watermelon (97103) v2cucwmbB351
CsaV3_5G005230Watermelon (97103) v2cucwmbB410
CsaV3_5G005230Wax gourdcucwgoB449
CsaV3_5G005230Wax gourdcucwgoB454
CsaV3_5G005230Wax gourdcucwgoB469
CsaV3_5G005230Wax gourdcucwgoB497