CsaV3_5G004780 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G004780
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5 : 3103075 .. 3103319 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGGCTCAAGGGTGTCGGTGCTACACAAGCTCACGACAGTGACGAAACAAACCGGCCACTTTCACCCATGAATGCAGCGGTGAGGCTTCCTTTTCTTGGCTGTTTATCGACTTTCGCCGCTTTTGGACTCAAATCAGTTTGTCCAAATCTTGAAAATGACAGAGAACGACGAACTCGAACTTATTCGATTACCAATCAGACTACATTTGATGCTGTATGGCTTCTTTCGGTAAACTTGGAGTAG

mRNA sequence

AGGCTCAAGGGTGTCGGTGCTACACAAGCTCACGACAGTGACGAAACAAACCGGCCACTTTCACCCATGAATGCAGCGGTGAGGCTTCCTTTTCTTGGCTGTTTATCGACTTTCGCCGCTTTTGGACTCAAATCAGTTTGTCCAAATCTTGAAAATGACAGAGAACGACGAACTCGAACTTATTCGATTACCAATCAGACTACATTTGATGCTGTATGGCTTCTTTCGGTAAACTTGGAGTA

Coding sequence (CDS)

AGGCTCAAGGGTGTCGGTGCTACACAAGCTCACGACAGTGACGAAACAAACCGGCCACTTTCACCCATGAATGCAGCGGTGAGGCTTCCTTTTCTTGGCTGTTTATCGACTTTCGCCGCTTTTGGACTCAAATCAGTTTGTCCAAATCTTGAAAATGACAGAGAACGACGAACTCGAACTTATTCGATTACCAATCAGACTACATTTGATGCTGTATGGCTTCTTTCGGTAAACTTGGAGTA

Protein sequence

RLKGVGATQAHDSDETNRPLSPMNAAVRLPFLGCLSTFAAFGLKSVCPNLENDRERRTRTYSITNQTTFDAVWLLSVNLEX

Homology

[Close]

BLAST of CsaV3_5G004780 vs. NCBI nr
Match: KGN50307.1 (hypothetical protein Csa_5G167000 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 4.0e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   RLKGVGATQAHDSDETNRPLSPMNAAVRLPFLGCLSTFAAFGLKSVCPNLENDRERRTRT 60
           RLKGVGATQAHDSDETNRPLSPMNAAVRLPFLGCLSTFAAFGLKSVCPNLENDRERRTRT
Sbjct: 299 RLKGVGATQAHDSDETNRPLSPMNAAVRLPFLGCLSTFAAFGLKSVCPNLENDRERRTRT 358

Query: 61  YSITNQTTFDAVWLLSVNLE 81
           YSITNQTTFDAVWLLSVNLE
Sbjct: 359 YSITNQTTFDAVWLLSVNLE 378

[Close]

BLAST of CsaV3_5G004780 vs. NCBI nr
Match: XP_011656158.1 (PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 6.5e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1   RLKGVGATQAHDSDETNRPLSPMNAAVRLPFLGCLSTFAAFGLKSVCPNLENDRERRTRT 60
           RLKGVGATQAHDSDETNRPLSPMNAAVRLPFLGCLSTFAAFGLKSVCPNLENDRERRTRT
Sbjct: 565 RLKGVGATQAHDSDETNRPLSPMNAAVRLPFLGCLSTFAAFGLKSVCPNLENDRERRTRT 624

Query: 61  YSITNQTTFDAVWLLS 77
           YSITNQTTFDAVWLLS
Sbjct: 625 YSITNQTTFDAVWLLS 640

[Close]

BLAST of CsaV3_5G004780 vs. TrEMBL
Match: tr|A0A0A0KPF0|A0A0A0KPF0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G167000 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.7e-38
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1   RLKGVGATQAHDSDETNRPLSPMNAAVRLPFLGCLSTFAAFGLKSVCPNLENDRERRTRT 60
           RLKGVGATQAHDSDETNRPLSPMNAAVRLPFLGCLSTFAAFGLKSVCPNLENDRERRTRT
Sbjct: 299 RLKGVGATQAHDSDETNRPLSPMNAAVRLPFLGCLSTFAAFGLKSVCPNLENDRERRTRT 358

Query: 61  YSITNQTTFDAVWLLSVNLE 81
           YSITNQTTFDAVWLLSVNLE
Sbjct: 359 YSITNQTTFDAVWLLSVNLE 378

The following BLAST results are available for this feature:

BLAST of CsaV3_5G004780 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50307.1	4.0e-38	100.00	hypothetical protein Csa_5G167000 [Cucumis sativus]	[more]
XP_011656158.1	6.5e-36	100.00	PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Cucumis sativus]	[more]

BLAST of CsaV3_5G004780 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G004780 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G004780 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KPF0\|A0A0A0KPF0_CUCSA	2.7e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G167000 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006857	oligopeptide transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0022857	transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G004780.1	CsaV3_5G004780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G004780	CsGy5G004780	Cucumber (Gy14) v2	cgybcucB232

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G004780	Silver-seed gourd	carcucB0752
CsaV3_5G004780	Silver-seed gourd	carcucB1081
CsaV3_5G004780	Cucumber (Gy14) v1	cgycucB183
CsaV3_5G004780	Cucurbita maxima (Rimu)	cmacucB0341
CsaV3_5G004780	Cucurbita maxima (Rimu)	cmacucB0731
CsaV3_5G004780	Cucurbita moschata (Rifu)	cmocucB0336
CsaV3_5G004780	Cucurbita moschata (Rifu)	cmocucB0719
CsaV3_5G004780	Cucurbita pepo (Zucchini)	cpecucB0916
CsaV3_5G004780	Wild cucumber (PI 183967)	cpicucB285
CsaV3_5G004780	Bottle gourd (USVL1VR-Ls)	cuclsiB345
CsaV3_5G004780	Melon (DHL92) v3.5.1	cucmeB353
CsaV3_5G004780	Melon (DHL92) v3.6.1	cucmedB345
CsaV3_5G004780	Watermelon (Charleston Gray)	cucwcgB385
CsaV3_5G004780	Watermelon (97103) v1	cucwmB440
CsaV3_5G004780	Watermelon (97103) v2	cucwmbB351
CsaV3_5G004780	Wax gourd	cucwgoB449
CsaV3_5G004780	Wax gourd	cucwgoB499