CsaV3_5G004420 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G004420
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 2919970 .. 2921501 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATAAGAACCGTTCCCGCATTTGTCGCCACTGTGTAATTTCCCTCCATTTGCTTCCACTCCCTCTGTTTTCCATTTCTGCTCTTCTTTTCTTTTCCCCTTCTTTCTCATTCTTCCTTCATTCTCCATCCTTTCATATCCTTTCCCGTTTCTGTTCTTCTCTGACTTCATCACCATCTTCATTTTGGTCCAGTTTTCTCTGTTTCCGGCTTTCTGAACCCAGGTATGCAATTTGATGTAATGATCTTGTTAATCTTTTTTTTTTCCTTTCTCCACACGTTTTTTTTTCATTTTTTTTTAATTTCTACTCGATTAGCATCGTTTCTGTTTAGAATTAATTGATTCAACTTTATTTCGACTTTGCATAGCTGAGAAGTACACGATTTTCCAATTTCCGTGCGACTTAAGATTTTGACGGTTGAGAATTATGAAGTTTTTGATACATAGAATTTGGTGTTTGTTCAATGGGTTTAAATCTTGTGGATGTTTAATTGGAGGGTAATAATCATGTTTCTCTTTGATTACTGCATTTTGATTGATACCCTGTATTCTGTATTTTTCATTTTAGATTTTTGGAATTTAAAATTGATTTACATATTTTTATAATAACTAATTGTGTTGGTGATATATAATTGAATTTACCCTTACCCACAAGCTTTTGGGTCAATCTACGATTTAAGAAATTGGGTTGTTATTTTCCATTTCTTCGGTTAGCTTTTAATAACAGAGATTATAAGCATGTTGTATAGCAGCTTCTTTCAACGGAGATTCTCTCATGAACTGATCACGTGAACTGTGTACCTATATTTTGTTCAATACAGCTCCAGACCTCTTTTCAGAGAAGTTACTGTTTAGAACTTCTCAAGAGGCGGAATTTTACCATTCATATAACCTTCAAGATCGAAACCTTTCACAACAACTGTAAGCAAGTGGAGAAGTGAAAGCGAAACTAATTGAACTTAATTGAGAAATATTGGTTAGGAGAACGGGGGATCACGTTTCTCTTATAGTTCTGATAGCCATAACTGAAAGTCATTTGTGACTTAATTTCCTTTTCCCTCTCAATGGAAATTAGATAATATATAAGATTTGGAGCATGACTTCCCTAATTAATTGAAACTAAATTCAAGATGCATATAACTTCCCATGAGTTCAACAACATAGAGGGAAATTGGAAGCTCTAAACTTGGTCAAAGCTATATATTTCAGTCAGCTATGATTAGGTTGATATATTTTTAACTTTTACTTCATGATAAACTCTTTTTACATCCTTTTGAAGTTTGAGTAGCCTTAAAGATATTCTTATTCGATGATTTTCTTTTCCCTTGATGGGCACTCAATGCTTGCTATATTCTGGGGTTTATTTTAGGCAGTAACACAAAAGACCTGTTTTTAGGAGAAATTGAATGCATGAAATAGAAAATCAACTATCCATTTCAAACATCTCATTTATATTGTACCTACTTTCGTACTTGCAGAAATATTCTGTTCAGTCAATATGACTTTAAAAATGTTCATTGGCAGGTGCTGA

mRNA sequence

ATGCATAAGAACCGTTCCCGCATTTGTCGCCACTGTGTAATTTCCCTCCATTTGCTTCCACTCCCTCTGTTTTCCATTTCTGCTCTTCTTTTCTTTTCCCCTTCTTTCTCATTCTTCCTTCATTCTCCATCCTTTCATATCCTTTCCCGTTTCTGTTCTTCTCTGACTTCATCACCATCTTCATTTTGGTCCAGTTTTCTCTGTTTCCGGCTTTCTGAACCCAGGTGCTGA

Coding sequence (CDS)

ATGCATAAGAACCGTTCCCGCATTTGTCGCCACTGTGTAATTTCCCTCCATTTGCTTCCACTCCCTCTGTTTTCCATTTCTGCTCTTCTTTTCTTTTCCCCTTCTTTCTCATTCTTCCTTCATTCTCCATCCTTTCATATCCTTTCCCGTTTCTGTTCTTCTCTGACTTCATCACCATCTTCATTTTGGTCCAGTTTTCTCTGTTTCCGGCTTTCTGAACCCAGGTGCTGA

Protein sequence

MHKNRSRICRHCVISLHLLPLPLFSISALLFFSPSFSFFLHSPSFHILSRFCSSLTSSPSSFWSSFLCFRLSEPRC
Homology
[Close]
BLAST of CsaV3_5G004420 vs. NCBI nr
Match: KGN50274.1 (hypothetical protein Csa_5G165190 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 2.0e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MHKNRSRICRHCVISLHLLPLPLFSISALLFFSPSFSFFLHSPSFHILSRFCSSLTSSPS 60
          MHKNRSRICRHCVISLHLLPLPLFSISALLFFSPSFSFFLHSPSFHILSRFCSSLTSSPS
Sbjct: 1  MHKNRSRICRHCVISLHLLPLPLFSISALLFFSPSFSFFLHSPSFHILSRFCSSLTSSPS 60

Query: 61 SFWSSFLCFRLSEPRC 77
          SFWSSFLCFRLSEPRC
Sbjct: 61 SFWSSFLCFRLSEPRC 76

[Close]
BLAST of CsaV3_5G004420 vs. TrEMBL
Match: tr|A0A0A0KMZ6|A0A0A0KMZ6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165190 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MHKNRSRICRHCVISLHLLPLPLFSISALLFFSPSFSFFLHSPSFHILSRFCSSLTSSPS 60
          MHKNRSRICRHCVISLHLLPLPLFSISALLFFSPSFSFFLHSPSFHILSRFCSSLTSSPS
Sbjct: 1  MHKNRSRICRHCVISLHLLPLPLFSISALLFFSPSFSFFLHSPSFHILSRFCSSLTSSPS 60

Query: 61 SFWSSFLCFRLSEPRC 77
          SFWSSFLCFRLSEPRC
Sbjct: 61 SFWSSFLCFRLSEPRC 76

The following BLAST results are available for this feature:
BLAST of CsaV3_5G004420 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50274.12.0e-34100.00hypothetical protein Csa_5G165190 [Cucumis sativus][more]
BLAST of CsaV3_5G004420 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G004420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G004420 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KMZ6|A0A0A0KMZ6_CUCSA1.3e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165190 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G004420.1CsaV3_5G004420.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G004420Watermelon (97103) v2cucwmbB351
CsaV3_5G004420Watermelon (97103) v2cucwmbB372
CsaV3_5G004420Wax gourdcucwgoB449
CsaV3_5G004420Cucumber (Chinese Long) v3cuccucB124
CsaV3_5G004420Silver-seed gourdcarcucB0580
CsaV3_5G004420Cucumber (Gy14) v2cgybcucB134
CsaV3_5G004420Cucumber (Gy14) v2cgybcucB232
CsaV3_5G004420Cucumber (Gy14) v1cgycucB183
CsaV3_5G004420Cucumber (Gy14) v1cgycucB502
CsaV3_5G004420Cucurbita maxima (Rimu)cmacucB0352
CsaV3_5G004420Cucurbita maxima (Rimu)cmacucB0732
CsaV3_5G004420Cucurbita maxima (Rimu)cmacucB0990
CsaV3_5G004420Cucurbita moschata (Rifu)cmocucB0347
CsaV3_5G004420Cucurbita moschata (Rifu)cmocucB0720
CsaV3_5G004420Cucurbita moschata (Rifu)cmocucB0974
CsaV3_5G004420Cucurbita pepo (Zucchini)cpecucB0209
CsaV3_5G004420Cucurbita pepo (Zucchini)cpecucB0917
CsaV3_5G004420Cucurbita pepo (Zucchini)cpecucB1070
CsaV3_5G004420Wild cucumber (PI 183967)cpicucB167
CsaV3_5G004420Wild cucumber (PI 183967)cpicucB285
CsaV3_5G004420Bottle gourd (USVL1VR-Ls)cuclsiB345
CsaV3_5G004420Bottle gourd (USVL1VR-Ls)cuclsiB409
CsaV3_5G004420Melon (DHL92) v3.5.1cucmeB357
CsaV3_5G004420Melon (DHL92) v3.5.1cucmeB410
CsaV3_5G004420Melon (DHL92) v3.6.1cucmedB349
CsaV3_5G004420Melon (DHL92) v3.6.1cucmedB408
CsaV3_5G004420Watermelon (Charleston Gray)cucwcgB385
CsaV3_5G004420Watermelon (97103) v1cucwmB398
CsaV3_5G004420Watermelon (97103) v1cucwmB440