CsaV3_5G004380 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G004380
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 2894730 .. 2895137 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCATATAACATTCACCAAAGAAAGGAATCGAACGGTGATCATGAATTGACAAACTTCAAATGCCTATCACCAAAGAAGAATAACATTGAGCTATTGCCCATAAAGCCAAACACTACTATTGTAGTGTTGTCACCAAGACGGGCTGCTCGAGTTGAAGTGCTAAAAGCCAAATTTGGAAGCACCATTTGGAAGGCTCAACAAAAACTTCAAAAATCCAATAATGATTCAAATAAGTATGAATATGTTGTCATTGGTGCGACTCCGAAGACATGCTCAATATTGCAAGAACAAAAAAGAGCTTCAAGGGAAGCTCTTGACAAGATGATCAACCCAGTGTTTGATTTCAACGAGAATCTCGATTCTATGAAAGAATTTGAAAGATATTGGAGTCGGGCGCATGAG

mRNA sequence

ATGAAACCATATAACATTCACCAAAGAAAGGAATCGAACGGTGATCATGAATTGACAAACTTCAAATGCCTATCACCAAAGAAGAATAACATTGAGCTATTGCCCATAAAGCCAAACACTACTATTGTAGTGTTGTCACCAAGACGGGCTGCTCGAGTTGAAGTGCTAAAAGCCAAATTTGGAAGCACCATTTGGAAGGCTCAACAAAAACTTCAAAAATCCAATAATGATTCAAATAAGTATGAATATGTTGTCATTGGTGCGACTCCGAAGACATGCTCAATATTGCAAGAACAAAAAAGAGCTTCAAGGGAAGCTCTTGACAAGATGATCAACCCAGTGTTTGATTTCAACGAGAATCTCGATTCTATGAAAGAATTTGAAAGATATTGGAGTCGGGCGCATGAG

Coding sequence (CDS)

ATGAAACCATATAACATTCACCAAAGAAAGGAATCGAACGGTGATCATGAATTGACAAACTTCAAATGCCTATCACCAAAGAAGAATAACATTGAGCTATTGCCCATAAAGCCAAACACTACTATTGTAGTGTTGTCACCAAGACGGGCTGCTCGAGTTGAAGTGCTAAAAGCCAAATTTGGAAGCACCATTTGGAAGGCTCAACAAAAACTTCAAAAATCCAATAATGATTCAAATAAGTATGAATATGTTGTCATTGGTGCGACTCCGAAGACATGCTCAATATTGCAAGAACAAAAAAGAGCTTCAAGGGAAGCTCTTGACAAGATGATCAACCCAGTGTTTGATTTCAACGAGAATCTCGATTCTATGAAAGAATTTGAAAGATATTGGAGTCGGGCGCATGAG

Protein sequence

MKPYNIHQRKESNGDHELTNFKCLSPKKNNIELLPIKPNTTIVVLSPRRAARVEVLKAKFGSTIWKAQQKLQKSNNDSNKYEYVVIGATPKTCSILQEQKRASREALDKMINPVFDFNENLDSMKEFERYWSRAHE
Homology
[Close]
BLAST of CsaV3_5G004380 vs. NCBI nr
Match: KGN50269.1 (hypothetical protein Csa_5G164650 [Cucumis sativus])

HSP 1 Score: 276.9 bits (707), Expect = 3.6e-71
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MKPYNIHQRKESNGDHELTNFKCLSPKKNNIELLPIKPNTTIVVLSPRRAARVEVLKAKF 60
           MKPYNIHQRKESNGDHELTNFKCLSPKKNNIELLPIKPNTTIVVLSPRRAARVEVLKAKF
Sbjct: 29  MKPYNIHQRKESNGDHELTNFKCLSPKKNNIELLPIKPNTTIVVLSPRRAARVEVLKAKF 88

Query: 61  GSTIWKAQQKLQKSNNDSNKYEYVVIGATPKTCSILQEQKRASREALDKMINPVFDFNEN 120
           GSTIWKAQQKLQKSNNDSNKYEYVVIGATPKTCSILQEQKRASREALDKMINPVFDFNEN
Sbjct: 89  GSTIWKAQQKLQKSNNDSNKYEYVVIGATPKTCSILQEQKRASREALDKMINPVFDFNEN 148

Query: 121 LDSMKEFERYWSRAHE 137
           LDSMKEFERYWSRAHE
Sbjct: 149 LDSMKEFERYWSRAHE 164

[Close]
BLAST of CsaV3_5G004380 vs. NCBI nr
Match: KGN50266.1 (hypothetical protein Csa_5G162640 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 2.4e-43
Identity = 102/129 (79.07%), Postives = 110/129 (85.27%), Query Frame = 0 

Query: 1   MKPYNIHQRKESNGDHELTNFKCLSPKKNNIELLPIKPNTTIVVLSPRRAARVEVLKAKF 60
           M PYNIHQ KESN DH+L NFKC SP KNNI +LPIKPN TIVVLSPRRAARVEVLKAKF
Sbjct: 1   MTPYNIHQIKESNSDHDLANFKCPSP-KNNIAVLPIKPN-TIVVLSPRRAARVEVLKAKF 60

Query: 61  GSTIWKAQQKLQKSNNDSNKYEYVVIGATPKTCSILQEQKRASREALDKMINPVFDFNEN 120
           GSTI KAQQKL  SNNDSNK+EY+V GATP  CSI QEQ++A REALDK INP FDFNEN
Sbjct: 61  GSTILKAQQKLHNSNNDSNKHEYIV-GATPNICSI-QEQRQALREALDK-INPAFDFNEN 120

Query: 121 LDSMKEFER 130
           LDSM+EF +
Sbjct: 121 LDSMREFAK 124

[Close]
BLAST of CsaV3_5G004380 vs. TrEMBL
Match: tr|A0A0A0KMZ1|A0A0A0KMZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G164650 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.4e-71
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 

Query: 1   MKPYNIHQRKESNGDHELTNFKCLSPKKNNIELLPIKPNTTIVVLSPRRAARVEVLKAKF 60
           MKPYNIHQRKESNGDHELTNFKCLSPKKNNIELLPIKPNTTIVVLSPRRAARVEVLKAKF
Sbjct: 29  MKPYNIHQRKESNGDHELTNFKCLSPKKNNIELLPIKPNTTIVVLSPRRAARVEVLKAKF 88

Query: 61  GSTIWKAQQKLQKSNNDSNKYEYVVIGATPKTCSILQEQKRASREALDKMINPVFDFNEN 120
           GSTIWKAQQKLQKSNNDSNKYEYVVIGATPKTCSILQEQKRASREALDKMINPVFDFNEN
Sbjct: 89  GSTIWKAQQKLQKSNNDSNKYEYVVIGATPKTCSILQEQKRASREALDKMINPVFDFNEN 148

Query: 121 LDSMKEFERYWSRAHE 137
           LDSMKEFERYWSRAHE
Sbjct: 149 LDSMKEFERYWSRAHE 164

[Close]
BLAST of CsaV3_5G004380 vs. TrEMBL
Match: tr|A0A0A0KRB6|A0A0A0KRB6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162640 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.6e-43
Identity = 102/129 (79.07%), Postives = 110/129 (85.27%), Query Frame = 0 

Query: 1   MKPYNIHQRKESNGDHELTNFKCLSPKKNNIELLPIKPNTTIVVLSPRRAARVEVLKAKF 60
           M PYNIHQ KESN DH+L NFKC SP KNNI +LPIKPN TIVVLSPRRAARVEVLKAKF
Sbjct: 1   MTPYNIHQIKESNSDHDLANFKCPSP-KNNIAVLPIKPN-TIVVLSPRRAARVEVLKAKF 60

Query: 61  GSTIWKAQQKLQKSNNDSNKYEYVVIGATPKTCSILQEQKRASREALDKMINPVFDFNEN 120
           GSTI KAQQKL  SNNDSNK+EY+V GATP  CSI QEQ++A REALDK INP FDFNEN
Sbjct: 61  GSTILKAQQKLHNSNNDSNKHEYIV-GATPNICSI-QEQRQALREALDK-INPAFDFNEN 120

Query: 121 LDSMKEFER 130
           LDSM+EF +
Sbjct: 121 LDSMREFAK 124

The following BLAST results are available for this feature:
BLAST of CsaV3_5G004380 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50269.13.6e-71100.00hypothetical protein Csa_5G164650 [Cucumis sativus][more]
KGN50266.12.4e-4379.07hypothetical protein Csa_5G162640 [Cucumis sativus][more]
BLAST of CsaV3_5G004380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G004380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G004380 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KMZ1|A0A0A0KMZ1_CUCSA2.4e-71100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G164650 PE=4 SV=1[more]
tr|A0A0A0KRB6|A0A0A0KRB6_CUCSA1.6e-4379.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162640 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G004380.1CsaV3_5G004380.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G004380Cucumber (Gy14) v2cgybcucB134
CsaV3_5G004380Cucumber (Gy14) v2cgybcucB232
CsaV3_5G004380Cucumber (Gy14) v1cgycucB502
CsaV3_5G004380Cucurbita maxima (Rimu)cmacucB0352
CsaV3_5G004380Cucurbita maxima (Rimu)cmacucB0732
CsaV3_5G004380Cucurbita maxima (Rimu)cmacucB0736
CsaV3_5G004380Cucurbita maxima (Rimu)cmacucB0990
CsaV3_5G004380Cucurbita moschata (Rifu)cmocucB0347
CsaV3_5G004380Cucurbita moschata (Rifu)cmocucB0720
CsaV3_5G004380Cucurbita moschata (Rifu)cmocucB0725
CsaV3_5G004380Cucurbita moschata (Rifu)cmocucB0974
CsaV3_5G004380Cucurbita pepo (Zucchini)cpecucB0209
CsaV3_5G004380Cucurbita pepo (Zucchini)cpecucB0911
CsaV3_5G004380Cucurbita pepo (Zucchini)cpecucB1070
CsaV3_5G004380Wild cucumber (PI 183967)cpicucB167
CsaV3_5G004380Wild cucumber (PI 183967)cpicucB285
CsaV3_5G004380Bottle gourd (USVL1VR-Ls)cuclsiB345
CsaV3_5G004380Bottle gourd (USVL1VR-Ls)cuclsiB409
CsaV3_5G004380Melon (DHL92) v3.5.1cucmeB357
CsaV3_5G004380Melon (DHL92) v3.5.1cucmeB410
CsaV3_5G004380Melon (DHL92) v3.6.1cucmedB349
CsaV3_5G004380Melon (DHL92) v3.6.1cucmedB408
CsaV3_5G004380Watermelon (Charleston Gray)cucwcgB385
CsaV3_5G004380Watermelon (97103) v1cucwmB398
CsaV3_5G004380Watermelon (97103) v2cucwmbB351
CsaV3_5G004380Watermelon (97103) v2cucwmbB372
CsaV3_5G004380Wax gourdcucwgoB449
CsaV3_5G004380Cucumber (Chinese Long) v3cuccucB124
CsaV3_5G004380Silver-seed gourdcarcucB0580
CsaV3_5G004380Silver-seed gourdcarcucB0962