CsaV3_5G004370 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G004370
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 2888555 .. 2889058 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGCATTCAAAAAGATGAAGATGATGCAAACAAAACGGAGACATGTAGATTATCATGTGTTAAAACCCAAAGTTCTTTCAACCAAAGTTACAACGGCCATGAAACCATATAACATTTACCAAAGAAAGGAATCCAAGAGTGATCGTGAATTGGCAAACTTCAAATGCCCATCACCAAAGAAGAATAACATTGAGCTATTGCCCGTAAAGCCAAACACTACTATTGTAGTGTTGTCACCAAGACGGGCTGCACGAGTTGAAGTGTTAAAAGCCAAATTTGGAAGCACCATTTTGAAGGCTCAACAAAAACTTCAAAATTCCAATAATGATTCTAATAAGTATGAATATGTTGTTGTTGGTGCGACTCCAAAGACATGCTCAATATTACAAGAACAAAAACGAGCTTCAAGGGAAGCTCTTGACAAGATCAACCCAGTGTTTGATTTCAACGAGAATCTCGATTCCATGAGAGAATTTGAAAAGATATTGGAGTCGGGCGCTTGA

mRNA sequence

CAAGCATTCAAAAAGATGAAGATGATGCAAACAAAACGGAGACATGTAGATTATCATGTGTTAAAACCCAAAGTTCTTTCAACCAAAGTTACAACGGCCATGAAACCATATAACATTTACCAAAGAAAGGAATCCAAGAGTGATCGTGAATTGGCAAACTTCAAATGCCCATCACCAAAGAAGAATAACATTGAGCTATTGCCCGTAAAGCCAAACACTACTATTGTAGTGTTGTCACCAAGACGGGCTGCACGAGTTGAAGTGTTAAAAGCCAAATTTGGAAGCACCATTTTGAAGGCTCAACAAAAACTTCAAAATTCCAATAATGATTCTAATAAGTATGAATATGTTGTTGTTGGTGCGACTCCAAAGACATGCTCAATATTACAAGAACAAAAACGAGCTTCAAGGGAAGCTCTTGACAAGATCAACCCAGTGTTTGATTTCAACGAGAATCTCGATTCCATGAGAGAATTTGAAAAGATATTGGAGTCGGGCGCTTGA

Coding sequence (CDS)

CAAGCATTCAAAAAGATGAAGATGATGCAAACAAAACGGAGACATGTAGATTATCATGTGTTAAAACCCAAAGTTCTTTCAACCAAAGTTACAACGGCCATGAAACCATATAACATTTACCAAAGAAAGGAATCCAAGAGTGATCGTGAATTGGCAAACTTCAAATGCCCATCACCAAAGAAGAATAACATTGAGCTATTGCCCGTAAAGCCAAACACTACTATTGTAGTGTTGTCACCAAGACGGGCTGCACGAGTTGAAGTGTTAAAAGCCAAATTTGGAAGCACCATTTTGAAGGCTCAACAAAAACTTCAAAATTCCAATAATGATTCTAATAAGTATGAATATGTTGTTGTTGGTGCGACTCCAAAGACATGCTCAATATTACAAGAACAAAAACGAGCTTCAAGGGAAGCTCTTGACAAGATCAACCCAGTGTTTGATTTCAACGAGAATCTCGATTCCATGAGAGAATTTGAAAAGATATTGGAGTCGGGCGCTTGA

Protein sequence

QAFKKMKMMQTKRRHVDYHVLKPKVLSTKVTTAMKPYNIYQRKESKSDRELANFKCPSPKKNNIELLPVKPNTTIVVLSPRRAARVEVLKAKFGSTILKAQQKLQNSNNDSNKYEYVVVGATPKTCSILQEQKRASREALDKINPVFDFNENLDSMREFEKILESGA
Homology
[Close]
BLAST of CsaV3_5G004370 vs. NCBI nr
Match: KGN50269.1 (hypothetical protein Csa_5G164650 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 1.8e-69
Identity = 138/157 (87.90%), Postives = 147/157 (93.63%), Query Frame = 0 

Query: 6   MKMMQTKRRHVDYHVLKPKVLSTKVTTAMKPYNIYQRKESKSDRELANFKCPSPKKNNIE 65
           M+MMQTKRR++DYH+LKPKVLSTKVT  MKPYNI+QRKES  D EL NFKC SPKKNNIE
Sbjct: 1   MRMMQTKRRYIDYHMLKPKVLSTKVTKTMKPYNIHQRKESNGDHELTNFKCLSPKKNNIE 60

Query: 66  LLPVKPNTTIVVLSPRRAARVEVLKAKFGSTILKAQQKLQNSNNDSNKYEYVVVGATPKT 125
           LLP+KPNTTIVVLSPRRAARVEVLKAKFGSTI KAQQKLQ SNNDSNKYEYVV+GATPKT
Sbjct: 61  LLPIKPNTTIVVLSPRRAARVEVLKAKFGSTIWKAQQKLQKSNNDSNKYEYVVIGATPKT 120

Query: 126 CSILQEQKRASREALDK-INPVFDFNENLDSMREFEK 162
           CSILQEQKRASREALDK INPVFDFNENLDSM+EFE+
Sbjct: 121 CSILQEQKRASREALDKMINPVFDFNENLDSMKEFER 157

[Close]
BLAST of CsaV3_5G004370 vs. NCBI nr
Match: KGN50266.1 (hypothetical protein Csa_5G162640 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 5.2e-48
Identity = 108/132 (81.82%), Postives = 117/132 (88.64%), Query Frame = 0 

Query: 34  MKPYNIYQRKESKSDRELANFKCPSPKKNNIELLPVKPNTTIVVLSPRRAARVEVLKAKF 93
           M PYNI+Q KES SD +LANFKCPSP KNNI +LP+KPN TIVVLSPRRAARVEVLKAKF
Sbjct: 1   MTPYNIHQIKESNSDHDLANFKCPSP-KNNIAVLPIKPN-TIVVLSPRRAARVEVLKAKF 60

Query: 94  GSTILKAQQKLQNSNNDSNKYEYVVVGATPKTCSILQEQKRASREALDKINPVFDFNENL 153
           GSTILKAQQKL NSNNDSNK+EY +VGATP  CSI QEQ++A REALDKINP FDFNENL
Sbjct: 61  GSTILKAQQKLHNSNNDSNKHEY-IVGATPNICSI-QEQRQALREALDKINPAFDFNENL 120

Query: 154 DSMREFEKILES 166
           DSMREF K+LES
Sbjct: 121 DSMREFAKLLES 128

[Close]
BLAST of CsaV3_5G004370 vs. NCBI nr
Match: ONI28945.1 (hypothetical protein PRUPE_1G170900 [Prunus persica])

HSP 1 Score: 53.9 bits (128), Expect = 6.1e-04
Identity = 45/135 (33.33%), Postives = 71/135 (52.59%), Query Frame = 0 

Query: 47  SDRELANF-KCPSPKKNNIELLPVKPNTTIVV-LSPRRAARVEVLKAKFGSTILKAQQK- 106
           S+   +NF  C SP        PV   T+  + LSPRRAARV +LKA+F  TI KA+Q+ 
Sbjct: 91  SEVSSSNFSSCKSPVTVLHHASPVNATTSDEINLSPRRAARVAMLKARFAGTIFKAKQEV 150

Query: 107 -------LQNSNNDSNKYEYVVVGATPKTCSILQEQKRASRE----ALDKINPVFDFNEN 166
                  L+N+ ++  K+         K    ++EQ++  RE    AL+++      ++N
Sbjct: 151 LYSGSNGLENTEDEIRKFR---AAEMMKANEYIKEQRQRDREAARLALEEMERNVVIDDN 210

Query: 167 LDSMREFEKILESGA 168
             +MR+FE ++ SGA
Sbjct: 211 FKTMRDFEMLI-SGA 221

[Close]
BLAST of CsaV3_5G004370 vs. TrEMBL
Match: tr|A0A0A0KMZ1|A0A0A0KMZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G164650 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.2e-69
Identity = 138/157 (87.90%), Postives = 147/157 (93.63%), Query Frame = 0 

Query: 6   MKMMQTKRRHVDYHVLKPKVLSTKVTTAMKPYNIYQRKESKSDRELANFKCPSPKKNNIE 65
           M+MMQTKRR++DYH+LKPKVLSTKVT  MKPYNI+QRKES  D EL NFKC SPKKNNIE
Sbjct: 1   MRMMQTKRRYIDYHMLKPKVLSTKVTKTMKPYNIHQRKESNGDHELTNFKCLSPKKNNIE 60

Query: 66  LLPVKPNTTIVVLSPRRAARVEVLKAKFGSTILKAQQKLQNSNNDSNKYEYVVVGATPKT 125
           LLP+KPNTTIVVLSPRRAARVEVLKAKFGSTI KAQQKLQ SNNDSNKYEYVV+GATPKT
Sbjct: 61  LLPIKPNTTIVVLSPRRAARVEVLKAKFGSTIWKAQQKLQKSNNDSNKYEYVVIGATPKT 120

Query: 126 CSILQEQKRASREALDK-INPVFDFNENLDSMREFEK 162
           CSILQEQKRASREALDK INPVFDFNENLDSM+EFE+
Sbjct: 121 CSILQEQKRASREALDKMINPVFDFNENLDSMKEFER 157

[Close]
BLAST of CsaV3_5G004370 vs. TrEMBL
Match: tr|A0A0A0KRB6|A0A0A0KRB6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162640 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.5e-48
Identity = 108/132 (81.82%), Postives = 117/132 (88.64%), Query Frame = 0 

Query: 34  MKPYNIYQRKESKSDRELANFKCPSPKKNNIELLPVKPNTTIVVLSPRRAARVEVLKAKF 93
           M PYNI+Q KES SD +LANFKCPSP KNNI +LP+KPN TIVVLSPRRAARVEVLKAKF
Sbjct: 1   MTPYNIHQIKESNSDHDLANFKCPSP-KNNIAVLPIKPN-TIVVLSPRRAARVEVLKAKF 60

Query: 94  GSTILKAQQKLQNSNNDSNKYEYVVVGATPKTCSILQEQKRASREALDKINPVFDFNENL 153
           GSTILKAQQKL NSNNDSNK+EY +VGATP  CSI QEQ++A REALDKINP FDFNENL
Sbjct: 61  GSTILKAQQKLHNSNNDSNKHEY-IVGATPNICSI-QEQRQALREALDKINPAFDFNENL 120

Query: 154 DSMREFEKILES 166
           DSMREF K+LES
Sbjct: 121 DSMREFAKLLES 128

[Close]
BLAST of CsaV3_5G004370 vs. TrEMBL
Match: tr|A0A251R1N0|A0A251R1N0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G170900 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.0e-04
Identity = 45/135 (33.33%), Postives = 71/135 (52.59%), Query Frame = 0 

Query: 47  SDRELANF-KCPSPKKNNIELLPVKPNTTIVV-LSPRRAARVEVLKAKFGSTILKAQQK- 106
           S+   +NF  C SP        PV   T+  + LSPRRAARV +LKA+F  TI KA+Q+ 
Sbjct: 91  SEVSSSNFSSCKSPVTVLHHASPVNATTSDEINLSPRRAARVAMLKARFAGTIFKAKQEV 150

Query: 107 -------LQNSNNDSNKYEYVVVGATPKTCSILQEQKRASRE----ALDKINPVFDFNEN 166
                  L+N+ ++  K+         K    ++EQ++  RE    AL+++      ++N
Sbjct: 151 LYSGSNGLENTEDEIRKFR---AAEMMKANEYIKEQRQRDREAARLALEEMERNVVIDDN 210

Query: 167 LDSMREFEKILESGA 168
             +MR+FE ++ SGA
Sbjct: 211 FKTMRDFEMLI-SGA 221

The following BLAST results are available for this feature:
BLAST of CsaV3_5G004370 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50269.11.8e-6987.90hypothetical protein Csa_5G164650 [Cucumis sativus][more]
KGN50266.15.2e-4881.82hypothetical protein Csa_5G162640 [Cucumis sativus][more]
ONI28945.16.1e-0433.33hypothetical protein PRUPE_1G170900 [Prunus persica][more]
BLAST of CsaV3_5G004370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G004370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G004370 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KMZ1|A0A0A0KMZ1_CUCSA1.2e-6987.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G164650 PE=4 SV=1[more]
tr|A0A0A0KRB6|A0A0A0KRB6_CUCSA3.5e-4881.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G162640 PE=4 SV=1[more]
tr|A0A251R1N0|A0A251R1N0_PRUPE4.0e-0433.33Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G170900 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G004370.1CsaV3_5G004370.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G004370Cucumber (Chinese Long) v3cuccucB124
CsaV3_5G004370Silver-seed gourdcarcucB0580
CsaV3_5G004370Silver-seed gourdcarcucB0962
CsaV3_5G004370Cucumber (Gy14) v2cgybcucB134
CsaV3_5G004370Cucumber (Gy14) v2cgybcucB232
CsaV3_5G004370Cucumber (Gy14) v1cgycucB502
CsaV3_5G004370Cucurbita maxima (Rimu)cmacucB0352
CsaV3_5G004370Cucurbita maxima (Rimu)cmacucB0732
CsaV3_5G004370Cucurbita maxima (Rimu)cmacucB0736
CsaV3_5G004370Cucurbita maxima (Rimu)cmacucB0990
CsaV3_5G004370Cucurbita moschata (Rifu)cmocucB0347
CsaV3_5G004370Cucurbita moschata (Rifu)cmocucB0720
CsaV3_5G004370Cucurbita moschata (Rifu)cmocucB0725
CsaV3_5G004370Cucurbita moschata (Rifu)cmocucB0974
CsaV3_5G004370Cucurbita pepo (Zucchini)cpecucB0209
CsaV3_5G004370Cucurbita pepo (Zucchini)cpecucB0911
CsaV3_5G004370Cucurbita pepo (Zucchini)cpecucB1070
CsaV3_5G004370Wild cucumber (PI 183967)cpicucB167
CsaV3_5G004370Wild cucumber (PI 183967)cpicucB285
CsaV3_5G004370Bottle gourd (USVL1VR-Ls)cuclsiB345
CsaV3_5G004370Bottle gourd (USVL1VR-Ls)cuclsiB409
CsaV3_5G004370Melon (DHL92) v3.5.1cucmeB357
CsaV3_5G004370Melon (DHL92) v3.5.1cucmeB410
CsaV3_5G004370Melon (DHL92) v3.6.1cucmedB349
CsaV3_5G004370Melon (DHL92) v3.6.1cucmedB408
CsaV3_5G004370Watermelon (Charleston Gray)cucwcgB385
CsaV3_5G004370Watermelon (97103) v1cucwmB398
CsaV3_5G004370Watermelon (97103) v2cucwmbB351
CsaV3_5G004370Watermelon (97103) v2cucwmbB372
CsaV3_5G004370Wax gourdcucwgoB449