CsaV3_5G003740 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G003740
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 2420203 .. 2420400 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTATGACATGTGACCTAACCTATCATAAGAAAATTACATGGGTGATGAGGATAGGACCGGACTCAAAGACCAAAGAAAGGAAGTGTATTAGTAGCGCCAAGGGGCAGGCGTTTGGGTTTGGGTTTGGCAGCCCCACCTGTGGGCACAGCCACAGAGCCTTTGCCCAAAACCCTTGGATTGGTTCTTTGTTGTAA

mRNA sequence

ATGGTTATGACATGTGACCTAACCTATCATAAGAAAATTACATGGGTGATGAGGATAGGACCGGACTCAAAGACCAAAGAAAGGAAGTGTATTAGTAGCGCCAAGGGGCAGGCGTTTGGGTTTGGGTTTGGCAGCCCCACCTGTGGGCACAGCCACAGAGCCTTTGCCCAAAACCCTTGGATTGGTTCTTTGTTGTAA

Coding sequence (CDS)

ATGGTTATGACATGTGACCTAACCTATCATAAGAAAATTACATGGGTGATGAGGATAGGACCGGACTCAAAGACCAAAGAAAGGAAGTGTATTAGTAGCGCCAAGGGGCAGGCGTTTGGGTTTGGGTTTGGCAGCCCCACCTGTGGGCACAGCCACAGAGCCTTTGCCCAAAACCCTTGGATTGGTTCTTTGTTGTAA

Protein sequence

MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPWIGSLL
Homology
[Close]
BLAST of CsaV3_5G003740 vs. NCBI nr
Match: KGN50196.1 (hypothetical protein Csa_5G158520 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 1.0e-31
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPW 60
          MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPW
Sbjct: 1  MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPW 60

Query: 61 IGSLL 66
          IGSLL
Sbjct: 61 IGSLL 65

[Close]
BLAST of CsaV3_5G003740 vs. TrEMBL
Match: tr|A0A0A0KR43|A0A0A0KR43_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G158520 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 6.8e-32
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1  MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPW 60
          MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPW
Sbjct: 1  MVMTCDLTYHKKITWVMRIGPDSKTKERKCISSAKGQAFGFGFGSPTCGHSHRAFAQNPW 60

Query: 61 IGSLL 66
          IGSLL
Sbjct: 61 IGSLL 65

The following BLAST results are available for this feature:
BLAST of CsaV3_5G003740 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50196.11.0e-31100.00hypothetical protein Csa_5G158520 [Cucumis sativus][more]
BLAST of CsaV3_5G003740 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G003740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G003740 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KR43|A0A0A0KR43_CUCSA6.8e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G158520 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G003740.1CsaV3_5G003740.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G003740Watermelon (97103) v2cucwmbB351
CsaV3_5G003740Watermelon (97103) v2cucwmbB372
CsaV3_5G003740Watermelon (97103) v2cucwmbB397
CsaV3_5G003740Watermelon (97103) v2cucwmbB400
CsaV3_5G003740Watermelon (97103) v2cucwmbB405
CsaV3_5G003740Wax gourdcucwgoB449
CsaV3_5G003740Wax gourdcucwgoB490
CsaV3_5G003740Wax gourdcucwgoB496
CsaV3_5G003740Cucumber (Chinese Long) v3cuccucB120
CsaV3_5G003740Cucumber (Chinese Long) v3cuccucB124
CsaV3_5G003740Cucumber (Chinese Long) v3cuccucB125
CsaV3_5G003740Silver-seed gourdcarcucB0525
CsaV3_5G003740Silver-seed gourdcarcucB0653
CsaV3_5G003740Silver-seed gourdcarcucB0906
CsaV3_5G003740Silver-seed gourdcarcucB0903
CsaV3_5G003740Silver-seed gourdcarcucB0961
CsaV3_5G003740Silver-seed gourdcarcucB0964
CsaV3_5G003740Silver-seed gourdcarcucB0979
CsaV3_5G003740Cucumber (Gy14) v2cgybcucB131
CsaV3_5G003740Cucumber (Gy14) v2cgybcucB134
CsaV3_5G003740Cucumber (Gy14) v2cgybcucB135
CsaV3_5G003740Cucumber (Gy14) v2cgybcucB232
CsaV3_5G003740Cucumber (Gy14) v1cgycucB392
CsaV3_5G003740Cucumber (Gy14) v1cgycucB394
CsaV3_5G003740Cucumber (Gy14) v1cgycucB470
CsaV3_5G003740Cucumber (Gy14) v1cgycucB502
CsaV3_5G003740Cucumber (Gy14) v1cgycucB555
CsaV3_5G003740Cucurbita maxima (Rimu)cmacucB0352
CsaV3_5G003740Cucurbita maxima (Rimu)cmacucB0403
CsaV3_5G003740Cucurbita maxima (Rimu)cmacucB0730
CsaV3_5G003740Cucurbita maxima (Rimu)cmacucB0737
CsaV3_5G003740Cucurbita maxima (Rimu)cmacucB0990
CsaV3_5G003740Cucurbita maxima (Rimu)cmacucB0991
CsaV3_5G003740Cucurbita moschata (Rifu)cmocucB0299
CsaV3_5G003740Cucurbita moschata (Rifu)cmocucB0347
CsaV3_5G003740Cucurbita moschata (Rifu)cmocucB0399
CsaV3_5G003740Cucurbita moschata (Rifu)cmocucB0718
CsaV3_5G003740Cucurbita moschata (Rifu)cmocucB0726
CsaV3_5G003740Cucurbita moschata (Rifu)cmocucB0974
CsaV3_5G003740Cucurbita moschata (Rifu)cmocucB0975
CsaV3_5G003740Cucurbita pepo (Zucchini)cpecucB0209
CsaV3_5G003740Cucurbita pepo (Zucchini)cpecucB0276
CsaV3_5G003740Cucurbita pepo (Zucchini)cpecucB0777
CsaV3_5G003740Cucurbita pepo (Zucchini)cpecucB0912
CsaV3_5G003740Cucurbita pepo (Zucchini)cpecucB1070
CsaV3_5G003740Cucurbita pepo (Zucchini)cpecucB1072
CsaV3_5G003740Wild cucumber (PI 183967)cpicucB164
CsaV3_5G003740Wild cucumber (PI 183967)cpicucB167
CsaV3_5G003740Wild cucumber (PI 183967)cpicucB169
CsaV3_5G003740Wild cucumber (PI 183967)cpicucB285
CsaV3_5G003740Bottle gourd (USVL1VR-Ls)cuclsiB345
CsaV3_5G003740Bottle gourd (USVL1VR-Ls)cuclsiB399
CsaV3_5G003740Bottle gourd (USVL1VR-Ls)cuclsiB403
CsaV3_5G003740Bottle gourd (USVL1VR-Ls)cuclsiB409
CsaV3_5G003740Melon (DHL92) v3.5.1cucmeB357
CsaV3_5G003740Melon (DHL92) v3.5.1cucmeB410
CsaV3_5G003740Melon (DHL92) v3.5.1cucmeB412
CsaV3_5G003740Melon (DHL92) v3.5.1cucmeB415
CsaV3_5G003740Melon (DHL92) v3.6.1cucmedB349
CsaV3_5G003740Melon (DHL92) v3.6.1cucmedB405
CsaV3_5G003740Melon (DHL92) v3.6.1cucmedB407
CsaV3_5G003740Melon (DHL92) v3.6.1cucmedB408
CsaV3_5G003740Watermelon (Charleston Gray)cucwcgB374
CsaV3_5G003740Watermelon (Charleston Gray)cucwcgB385
CsaV3_5G003740Watermelon (Charleston Gray)cucwcgB416
CsaV3_5G003740Watermelon (97103) v1cucwmB398
CsaV3_5G003740Watermelon (97103) v1cucwmB433
CsaV3_5G003740Watermelon (97103) v1cucwmB426
CsaV3_5G003740Watermelon (97103) v1cucwmB429