CsaV3_5G002750 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G002750
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 1694611 .. 1695118 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCCATCTCCATTTTTTTCTTTTGCTTCTTGTGGATTCAAGCAGACGCAGGTGACCCATTTGCCCCATTTCTCTGTTTTTTGTTATTGCATTATTTGTTCTGCCATTGTAATAGTGCTTTACTTGCCACTAATATTGATTGGAAAAAGTTTGTTCATCTTTCATTTTTCTAGCCCCATCAAACCCACTTTTCTTTTTCTTTCCATAGAAACAAACAGAAACGGTCCCTTGCCTTATCTTGACTTACTGTTCAATGGAGACTTGTGTTGTAGATTATAGTGTCATTTCACCATTAAGATGGCCTACCTCTTTAGTTTTTAAGTGGAGAAATGATATGAAGCCTCTCGAGAAAGCTTCCTCTTTGGTTGCTTGGCCAATGGCCACTATTTGTCTTGGAATTGATGGAAAAAGTTTCACTCATTGCTTAAAATATAGCTTGTTTGCTTTCTTTACTTTCTTTTATTTGCTCAAATACGTGAAGGGGAAAGCAATATCTGAGTTTTGA

mRNA sequence

ATGGGTCCATCTCCATTTTTTTCTTTTGCTTCTTGTGGATTCAAGCAGACGCAGAAACAAACAGAAACGGTCCCTTGCCTTATCTTGACTTACTGTTCAATGGAGACTTGTGTTGTAGATTATAGTGTCATTTCACCATTAAGATGGCCTACCTCTTTAGTTTTTAAGTGGAGAAATGATATGAAGCCTCTCGAGAAAGCTTCCTCTTTGGTTGCTTGGCCAATGGCCACTATTTGTCTTGGAATTGATGGAAAAAGTTTCACTCATTGCTTAAAATATAGCTTGTTTGCTTTCTTTACTTTCTTTTATTTGCTCAAATACGTGAAGGGGAAAGCAATATCTGAGTTTTGA

Coding sequence (CDS)

ATGGGTCCATCTCCATTTTTTTCTTTTGCTTCTTGTGGATTCAAGCAGACGCAGAAACAAACAGAAACGGTCCCTTGCCTTATCTTGACTTACTGTTCAATGGAGACTTGTGTTGTAGATTATAGTGTCATTTCACCATTAAGATGGCCTACCTCTTTAGTTTTTAAGTGGAGAAATGATATGAAGCCTCTCGAGAAAGCTTCCTCTTTGGTTGCTTGGCCAATGGCCACTATTTGTCTTGGAATTGATGGAAAAAGTTTCACTCATTGCTTAAAATATAGCTTGTTTGCTTTCTTTACTTTCTTTTATTTGCTCAAATACGTGAAGGGGAAAGCAATATCTGAGTTTTGA

Protein sequence

MGPSPFFSFASCGFKQTQKQTETVPCLILTYCSMETCVVDYSVISPLRWPTSLVFKWRNDMKPLEKASSLVAWPMATICLGIDGKSFTHCLKYSLFAFFTFFYLLKYVKGKAISEF
Homology
[Close]
BLAST of CsaV3_5G002750 vs. NCBI nr
Match: KGN50091.1 (hypothetical protein Csa_5G153060 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 9.9e-62
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MGPSPFFSFASCGFKQTQKQTETVPCLILTYCSMETCVVDYSVISPLRWPTSLVFKWRND 60
           MGPSPFFSFASCGFKQTQKQTETVPCLILTYCSMETCVVDYSVISPLRWPTSLVFKWRND
Sbjct: 1   MGPSPFFSFASCGFKQTQKQTETVPCLILTYCSMETCVVDYSVISPLRWPTSLVFKWRND 60

Query: 61  MKPLEKASSLVAWPMATICLGIDGKSFTHCLKYSLFAFFTFFYLLKYVKGKAISEF 117
           MKPLEKASSLVAWPMATICLGIDGKSFTHCLKYSLFAFFTFFYLLKYVKGKAISEF
Sbjct: 61  MKPLEKASSLVAWPMATICLGIDGKSFTHCLKYSLFAFFTFFYLLKYVKGKAISEF 116

[Close]
BLAST of CsaV3_5G002750 vs. TrEMBL
Match: tr|A0A0A0KQW2|A0A0A0KQW2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G153060 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 6.5e-62
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MGPSPFFSFASCGFKQTQKQTETVPCLILTYCSMETCVVDYSVISPLRWPTSLVFKWRND 60
           MGPSPFFSFASCGFKQTQKQTETVPCLILTYCSMETCVVDYSVISPLRWPTSLVFKWRND
Sbjct: 1   MGPSPFFSFASCGFKQTQKQTETVPCLILTYCSMETCVVDYSVISPLRWPTSLVFKWRND 60

Query: 61  MKPLEKASSLVAWPMATICLGIDGKSFTHCLKYSLFAFFTFFYLLKYVKGKAISEF 117
           MKPLEKASSLVAWPMATICLGIDGKSFTHCLKYSLFAFFTFFYLLKYVKGKAISEF
Sbjct: 61  MKPLEKASSLVAWPMATICLGIDGKSFTHCLKYSLFAFFTFFYLLKYVKGKAISEF 116

The following BLAST results are available for this feature:
BLAST of CsaV3_5G002750 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50091.19.9e-62100.00hypothetical protein Csa_5G153060 [Cucumis sativus][more]
BLAST of CsaV3_5G002750 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G002750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G002750 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KQW2|A0A0A0KQW2_CUCSA6.5e-62100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G153060 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G002750.1CsaV3_5G002750.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G002750CSPI05G05350Wild cucumber (PI 183967)cpicucB285
CsaV3_5G002750Cp4.1LG05g03310Cucurbita pepo (Zucchini)cpecucB0915
CsaV3_5G002750Lsi09G002510Bottle gourd (USVL1VR-Ls)cuclsiB345
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G002750Cucumber (Chinese Long) v3cuccucB121
CsaV3_5G002750Cucumber (Chinese Long) v3cuccucB125
CsaV3_5G002750Cucumber (Chinese Long) v3cuccucB204
CsaV3_5G002750Silver-seed gourdcarcucB0963
CsaV3_5G002750Silver-seed gourdcarcucB0979
CsaV3_5G002750Cucumber (Gy14) v2cgybcucB132
CsaV3_5G002750Cucumber (Gy14) v2cgybcucB135
CsaV3_5G002750Cucumber (Gy14) v2cgybcucB232
CsaV3_5G002750Cucumber (Gy14) v2cgybcucB293
CsaV3_5G002750Cucumber (Gy14) v1cgycucB202
CsaV3_5G002750Cucumber (Gy14) v1cgycucB470
CsaV3_5G002750Cucurbita maxima (Rimu)cmacucB0352
CsaV3_5G002750Cucurbita maxima (Rimu)cmacucB0438
CsaV3_5G002750Cucurbita maxima (Rimu)cmacucB0730
CsaV3_5G002750Cucurbita maxima (Rimu)cmacucB1064
CsaV3_5G002750Cucurbita moschata (Rifu)cmocucB0347
CsaV3_5G002750Cucurbita moschata (Rifu)cmocucB0491
CsaV3_5G002750Cucurbita moschata (Rifu)cmocucB0718
CsaV3_5G002750Cucurbita moschata (Rifu)cmocucB1046
CsaV3_5G002750Cucurbita pepo (Zucchini)cpecucB0045
CsaV3_5G002750Cucurbita pepo (Zucchini)cpecucB0164
CsaV3_5G002750Cucurbita pepo (Zucchini)cpecucB0209
CsaV3_5G002750Cucurbita pepo (Zucchini)cpecucB0394
CsaV3_5G002750Wild cucumber (PI 183967)cpicucB165
CsaV3_5G002750Wild cucumber (PI 183967)cpicucB169
CsaV3_5G002750Wild cucumber (PI 183967)cpicucB359
CsaV3_5G002750Bottle gourd (USVL1VR-Ls)cuclsiB356
CsaV3_5G002750Bottle gourd (USVL1VR-Ls)cuclsiB404
CsaV3_5G002750Melon (DHL92) v3.5.1cucmeB357
CsaV3_5G002750Melon (DHL92) v3.5.1cucmeB392
CsaV3_5G002750Melon (DHL92) v3.5.1cucmeB413
CsaV3_5G002750Melon (DHL92) v3.5.1cucmeB415
CsaV3_5G002750Melon (DHL92) v3.6.1cucmedB349
CsaV3_5G002750Melon (DHL92) v3.6.1cucmedB387
CsaV3_5G002750Melon (DHL92) v3.6.1cucmedB406
CsaV3_5G002750Melon (DHL92) v3.6.1cucmedB407
CsaV3_5G002750Watermelon (Charleston Gray)cucwcgB419
CsaV3_5G002750Watermelon (Charleston Gray)cucwcgB385
CsaV3_5G002750Watermelon (Charleston Gray)cucwcgB414
CsaV3_5G002750Watermelon (Charleston Gray)cucwcgB416
CsaV3_5G002750Watermelon (97103) v1cucwmB433
CsaV3_5G002750Watermelon (97103) v1cucwmB425
CsaV3_5G002750Watermelon (97103) v1cucwmB429
CsaV3_5G002750Watermelon (97103) v2cucwmbB351
CsaV3_5G002750Watermelon (97103) v2cucwmbB396
CsaV3_5G002750Watermelon (97103) v2cucwmbB404
CsaV3_5G002750Wax gourdcucwgoB462