CsaV3_5G002480 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G002480
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 1502610 .. 1502856 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGAAATCGATTTTGGAGAGAAACGGCATCGTTTAGGAAGGCTGCACAATCAGATTGACGTGAGAACAGAATAAAAAAATGGTCAGCGGAACTGCGCAGGAATGGAAATGGCGGGGGAATGTAGCCGAGCGCGAGCCATTATGGAGCGCAGCGATTTCTCATGACACATTCACGATCACGACCCTTGGAACTCCCCTAGAGCCAGCCACCATCTTCTTCATCCTCCCTTTTCCCAATAATTAA

mRNA sequence

ATGGGTGAAATCGATTTTGGAGAGAAACGGCATCGTTTAGGAAGGCTGCACAATCAGATTGACGAATGGAAATGGCGGGGGAATGTAGCCGAGCGCGAGCCATTATGGAGCGCAGCGATTTCTCATGACACATTCACGATCACGACCCTTGGAACTCCCCTAGAGCCAGCCACCATCTTCTTCATCCTCCCTTTTCCCAATAATTAA

Coding sequence (CDS)

ATGGGTGAAATCGATTTTGGAGAGAAACGGCATCGTTTAGGAAGGCTGCACAATCAGATTGACGAATGGAAATGGCGGGGGAATGTAGCCGAGCGCGAGCCATTATGGAGCGCAGCGATTTCTCATGACACATTCACGATCACGACCCTTGGAACTCCCCTAGAGCCAGCCACCATCTTCTTCATCCTCCCTTTTCCCAATAATTAA

Protein sequence

MGEIDFGEKRHRLGRLHNQIDEWKWRGNVAEREPLWSAAISHDTFTITTLGTPLEPATIFFILPFPNN
Homology
[Close]
BLAST of CsaV3_5G002480 vs. NCBI nr
Match: KGN50063.1 (hypothetical protein Csa_5G152290 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 4.4e-33
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MGEIDFGEKRHRLGRLHNQIDEWKWRGNVAEREPLWSAAISHDTFTITTLGTPLEPATIF 60
          MGEIDFGEKRHRLGRLHNQIDEWKWRGNVAEREPLWSAAISHDTFTITTLGTPLEPATIF
Sbjct: 1  MGEIDFGEKRHRLGRLHNQIDEWKWRGNVAEREPLWSAAISHDTFTITTLGTPLEPATIF 60

Query: 61 FILPFPNN 69
          FILPFPNN
Sbjct: 61 FILPFPNN 68

[Close]
BLAST of CsaV3_5G002480 vs. TrEMBL
Match: tr|A0A0A0KKH1|A0A0A0KKH1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152290 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.9e-33
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MGEIDFGEKRHRLGRLHNQIDEWKWRGNVAEREPLWSAAISHDTFTITTLGTPLEPATIF 60
          MGEIDFGEKRHRLGRLHNQIDEWKWRGNVAEREPLWSAAISHDTFTITTLGTPLEPATIF
Sbjct: 1  MGEIDFGEKRHRLGRLHNQIDEWKWRGNVAEREPLWSAAISHDTFTITTLGTPLEPATIF 60

Query: 61 FILPFPNN 69
          FILPFPNN
Sbjct: 61 FILPFPNN 68

The following BLAST results are available for this feature:
BLAST of CsaV3_5G002480 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50063.14.4e-33100.00hypothetical protein Csa_5G152290 [Cucumis sativus][more]
BLAST of CsaV3_5G002480 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G002480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G002480 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KKH1|A0A0A0KKH1_CUCSA2.9e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152290 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G002480.1CsaV3_5G002480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G002480Cucumber (Chinese Long) v3cuccucB121
CsaV3_5G002480Cucumber (Chinese Long) v3cuccucB174
CsaV3_5G002480Cucumber (Chinese Long) v3cuccucB204
CsaV3_5G002480Silver-seed gourdcarcucB0963
CsaV3_5G002480Silver-seed gourdcarcucB0979
CsaV3_5G002480Cucumber (Gy14) v2cgybcucB132
CsaV3_5G002480Cucumber (Gy14) v2cgybcucB185
CsaV3_5G002480Cucumber (Gy14) v2cgybcucB232
CsaV3_5G002480Cucumber (Gy14) v2cgybcucB293
CsaV3_5G002480Cucumber (Gy14) v1cgycucB135
CsaV3_5G002480Cucumber (Gy14) v1cgycucB202
CsaV3_5G002480Cucumber (Gy14) v1cgycucB470
CsaV3_5G002480Cucurbita maxima (Rimu)cmacucB0352
CsaV3_5G002480Cucurbita maxima (Rimu)cmacucB0404
CsaV3_5G002480Cucurbita maxima (Rimu)cmacucB0408
CsaV3_5G002480Cucurbita maxima (Rimu)cmacucB0438
CsaV3_5G002480Cucurbita maxima (Rimu)cmacucB0504
CsaV3_5G002480Cucurbita maxima (Rimu)cmacucB0730
CsaV3_5G002480Cucurbita maxima (Rimu)cmacucB0872
CsaV3_5G002480Cucurbita maxima (Rimu)cmacucB1064
CsaV3_5G002480Cucurbita moschata (Rifu)cmocucB0347
CsaV3_5G002480Cucurbita moschata (Rifu)cmocucB0400
CsaV3_5G002480Cucurbita moschata (Rifu)cmocucB0491
CsaV3_5G002480Cucurbita moschata (Rifu)cmocucB0718
CsaV3_5G002480Cucurbita moschata (Rifu)cmocucB0860
CsaV3_5G002480Cucurbita moschata (Rifu)cmocucB1046
CsaV3_5G002480Cucurbita pepo (Zucchini)cpecucB0045
CsaV3_5G002480Cucurbita pepo (Zucchini)cpecucB0164
CsaV3_5G002480Cucurbita pepo (Zucchini)cpecucB0209
CsaV3_5G002480Cucurbita pepo (Zucchini)cpecucB0277
CsaV3_5G002480Cucurbita pepo (Zucchini)cpecucB0278
CsaV3_5G002480Cucurbita pepo (Zucchini)cpecucB0394
CsaV3_5G002480Cucurbita pepo (Zucchini)cpecucB0538
CsaV3_5G002480Cucurbita pepo (Zucchini)cpecucB0915
CsaV3_5G002480Wild cucumber (PI 183967)cpicucB165
CsaV3_5G002480Wild cucumber (PI 183967)cpicucB236
CsaV3_5G002480Wild cucumber (PI 183967)cpicucB285
CsaV3_5G002480Wild cucumber (PI 183967)cpicucB359
CsaV3_5G002480Bottle gourd (USVL1VR-Ls)cuclsiB345
CsaV3_5G002480Bottle gourd (USVL1VR-Ls)cuclsiB356
CsaV3_5G002480Bottle gourd (USVL1VR-Ls)cuclsiB404
CsaV3_5G002480Melon (DHL92) v3.5.1cucmeB357
CsaV3_5G002480Melon (DHL92) v3.5.1cucmeB392
CsaV3_5G002480Melon (DHL92) v3.5.1cucmeB413
CsaV3_5G002480Melon (DHL92) v3.5.1cucmeB415
CsaV3_5G002480Melon (DHL92) v3.5.1cucmeB417
CsaV3_5G002480Melon (DHL92) v3.6.1cucmedB349
CsaV3_5G002480Melon (DHL92) v3.6.1cucmedB387
CsaV3_5G002480Melon (DHL92) v3.6.1cucmedB406
CsaV3_5G002480Melon (DHL92) v3.6.1cucmedB407
CsaV3_5G002480Melon (DHL92) v3.6.1cucmedB411
CsaV3_5G002480Watermelon (Charleston Gray)cucwcgB419
CsaV3_5G002480Watermelon (Charleston Gray)cucwcgB385
CsaV3_5G002480Watermelon (Charleston Gray)cucwcgB414
CsaV3_5G002480Watermelon (Charleston Gray)cucwcgB416
CsaV3_5G002480Watermelon (97103) v1cucwmB433
CsaV3_5G002480Watermelon (97103) v1cucwmB425
CsaV3_5G002480Watermelon (97103) v1cucwmB429
CsaV3_5G002480Watermelon (97103) v2cucwmbB351
CsaV3_5G002480Watermelon (97103) v2cucwmbB396
CsaV3_5G002480Watermelon (97103) v2cucwmbB404
CsaV3_5G002480Watermelon (97103) v2cucwmbB403
CsaV3_5G002480Wax gourdcucwgoB462