CsaV3_5G001050 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G001050
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 533926 .. 534640 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGACGGGAAACTTCTGCGAGGAAGTCTCTTACTATAAGGAAGCAGATTATTCCTGTATCTGCAAAGTTCCGAGTTAACGTCGCACATAAATTCCTAACGATGTTGATGGACTTCCTTTTTAAGGACGTTCTCCGTTGTGGGTGGTCTCATATTCCGTCGCCTTGTGGAGCAGCGTCGCTGCAATTACCACTTTGGACTGGCCATGAGACAAACATTTTAGTTTCTCTATGGCTAAACTTTTAGTGATGTTTGTGTTATTTATTTTGTTTATGTGATGGGGGATTATAGATCCAATCCTTTACTAGATATGGAGCGAACGCGTTATGTTCGTATATTACCGGAGTTAACGTCACAAAGAAATTATTGTCGATGTTGATGGCTCCTGTTTGGAATCTCCATCGACTGTTGGTATCATATTCCATTGCCTTGTGGAGCAGCGTTGCTGCTTTTACTTCTTGGGATTGGCCATGAGACCTACATTTTATTCTTAATGTTTTAGTAATCTGCTGATGATGATATCGGTTAACAAAATACCATCTTTCGGGACTGAATGGCTTCTCAAGCCTTGCTGTCAAATCCGATAATCTGAGGCTTCTCTTTTATGTATTTGCTTTCTGTTTCATTTTTTCTTTTGCAGGTGTTGGAAATGGGAACTATTGCCAGCCATTCGGACTCCATTGATTTACCTTACGACTGTGGAAGCTCTGTTTAG

mRNA sequence

ATGCGACGGGAAACTTCTGCGAGGAAGTCTCTTACTATAAGGAAGCAGATTATTCCTGTATCTGCAAAGTTCCGAGTTAACGTCGCACATAAATTCCTAACGATGTTGATGGACTTCCTTTTTAAGGACGTTCTCCGTTGTGGGTGGTCTCATATTCCGTCGCCTTGTGGAGCAGCGTCGCTGCAATTACCACTTTGGACTGGCCATGAGACAAACATTTTAATCCAATCCTTTACTAGATATGGAGCGAACGCGTTATGTTCGTATATTACCGGAGTTAACGTCACAAAGAAATTATTGTCGATGTTGATGGCTCCTGTTTGGAATCTCCATCGACTGTTGGTGTTGGAAATGGGAACTATTGCCAGCCATTCGGACTCCATTGATTTACCTTACGACTGTGGAAGCTCTGTTTAG

Coding sequence (CDS)

ATGCGACGGGAAACTTCTGCGAGGAAGTCTCTTACTATAAGGAAGCAGATTATTCCTGTATCTGCAAAGTTCCGAGTTAACGTCGCACATAAATTCCTAACGATGTTGATGGACTTCCTTTTTAAGGACGTTCTCCGTTGTGGGTGGTCTCATATTCCGTCGCCTTGTGGAGCAGCGTCGCTGCAATTACCACTTTGGACTGGCCATGAGACAAACATTTTAATCCAATCCTTTACTAGATATGGAGCGAACGCGTTATGTTCGTATATTACCGGAGTTAACGTCACAAAGAAATTATTGTCGATGTTGATGGCTCCTGTTTGGAATCTCCATCGACTGTTGGTGTTGGAAATGGGAACTATTGCCAGCCATTCGGACTCCATTGATTTACCTTACGACTGTGGAAGCTCTGTTTAG

Protein sequence

MRRETSARKSLTIRKQIIPVSAKFRVNVAHKFLTMLMDFLFKDVLRCGWSHIPSPCGAASLQLPLWTGHETNILIQSFTRYGANALCSYITGVNVTKKLLSMLMAPVWNLHRLLVLEMGTIASHSDSIDLPYDCGSSV
Homology
[Close]
BLAST of CsaV3_5G001050 vs. NCBI nr
Match: KGN49921.1 (hypothetical protein Csa_5G140470 [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 8.7e-73
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 1   MRRETSARKSLTIRKQIIPVSAKFRVNVAHKFLTMLMDFLFKDVLRCGWSHIPSPCGAAS 60
           MRRETSARKSLTIRKQIIPVSAKFRVNVAHKFLTMLMDFLFKDVLRCGWSHIPSPCGAAS
Sbjct: 1   MRRETSARKSLTIRKQIIPVSAKFRVNVAHKFLTMLMDFLFKDVLRCGWSHIPSPCGAAS 60

Query: 61  LQLPLWTGHETNILIQSFTRYGANALCSYITGVNVTKKLLSMLMAPVWNLHRLLVLEMGT 120
           LQLPLWTGHETNILIQSFTRYGANALCSYITGVNVTKKLLSMLMAPVWNLHRLLVLEMGT
Sbjct: 61  LQLPLWTGHETNILIQSFTRYGANALCSYITGVNVTKKLLSMLMAPVWNLHRLLVLEMGT 120

Query: 121 IASHSDSIDLPYDCGSSV 139
           IASHSDSIDLPYDCGSSV
Sbjct: 121 IASHSDSIDLPYDCGSSV 138

[Close]
BLAST of CsaV3_5G001050 vs. TAIR10
Match: AT2G35750.1 (unknown protein)

HSP 1 Score: 41.6 bits (96), Expect = 4.7e-04
Identity = 21/34 (61.76%), Postives = 23/34 (67.65%), Query Frame = 0 

Query: 44 VLRCGW----SHIPSPCGAASLQLPLWTGHETNI 74
          +LR G+    SHIP PCGAASL LP  TGHE  I
Sbjct: 11 LLRFGYLAIGSHIPLPCGAASLLLPFGTGHEIYI 44

[Close]
BLAST of CsaV3_5G001050 vs. TrEMBL
Match: tr|A0A0A0KQD9|A0A0A0KQD9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G140470 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 5.7e-73
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 

Query: 1   MRRETSARKSLTIRKQIIPVSAKFRVNVAHKFLTMLMDFLFKDVLRCGWSHIPSPCGAAS 60
           MRRETSARKSLTIRKQIIPVSAKFRVNVAHKFLTMLMDFLFKDVLRCGWSHIPSPCGAAS
Sbjct: 1   MRRETSARKSLTIRKQIIPVSAKFRVNVAHKFLTMLMDFLFKDVLRCGWSHIPSPCGAAS 60

Query: 61  LQLPLWTGHETNILIQSFTRYGANALCSYITGVNVTKKLLSMLMAPVWNLHRLLVLEMGT 120
           LQLPLWTGHETNILIQSFTRYGANALCSYITGVNVTKKLLSMLMAPVWNLHRLLVLEMGT
Sbjct: 61  LQLPLWTGHETNILIQSFTRYGANALCSYITGVNVTKKLLSMLMAPVWNLHRLLVLEMGT 120

Query: 121 IASHSDSIDLPYDCGSSV 139
           IASHSDSIDLPYDCGSSV
Sbjct: 121 IASHSDSIDLPYDCGSSV 138

The following BLAST results are available for this feature:
BLAST of CsaV3_5G001050 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49921.18.7e-73100.00hypothetical protein Csa_5G140470 [Cucumis sativus][more]
BLAST of CsaV3_5G001050 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G35750.14.7e-0461.76unknown protein[more]
BLAST of CsaV3_5G001050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G001050 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KQD9|A0A0A0KQD9_CUCSA5.7e-73100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G140470 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G001050.1CsaV3_5G001050.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G001050Cucumber (Chinese Long) v3cuccucB119
CsaV3_5G001050Cucumber (Chinese Long) v3cuccucB175
CsaV3_5G001050Silver-seed gourdcarcucB0751
CsaV3_5G001050Silver-seed gourdcarcucB1035
CsaV3_5G001050Cucumber (Gy14) v2cgybcucB130
CsaV3_5G001050Cucumber (Gy14) v2cgybcucB186
CsaV3_5G001050Cucumber (Gy14) v2cgybcucB232
CsaV3_5G001050Cucumber (Gy14) v1cgycucB136
CsaV3_5G001050Cucumber (Gy14) v1cgycucB308
CsaV3_5G001050Cucumber (Gy14) v1cgycucB393
CsaV3_5G001050Cucurbita maxima (Rimu)cmacucB0305
CsaV3_5G001050Cucurbita maxima (Rimu)cmacucB0342
CsaV3_5G001050Cucurbita maxima (Rimu)cmacucB0402
CsaV3_5G001050Cucurbita maxima (Rimu)cmacucB0407
CsaV3_5G001050Cucurbita maxima (Rimu)cmacucB0735
CsaV3_5G001050Cucurbita moschata (Rifu)cmocucB0870
CsaV3_5G001050Cucurbita moschata (Rifu)cmocucB0296
CsaV3_5G001050Cucurbita moschata (Rifu)cmocucB0338
CsaV3_5G001050Cucurbita moschata (Rifu)cmocucB0398
CsaV3_5G001050Cucurbita moschata (Rifu)cmocucB0403
CsaV3_5G001050Cucurbita moschata (Rifu)cmocucB0723
CsaV3_5G001050Cucurbita pepo (Zucchini)cpecucB0226
CsaV3_5G001050Cucurbita pepo (Zucchini)cpecucB0275
CsaV3_5G001050Cucurbita pepo (Zucchini)cpecucB0910
CsaV3_5G001050Cucurbita pepo (Zucchini)cpecucB1071
CsaV3_5G001050Wild cucumber (PI 183967)cpicucB163
CsaV3_5G001050Wild cucumber (PI 183967)cpicucB237
CsaV3_5G001050Wild cucumber (PI 183967)cpicucB285
CsaV3_5G001050Bottle gourd (USVL1VR-Ls)cuclsiB345
CsaV3_5G001050Bottle gourd (USVL1VR-Ls)cuclsiB400
CsaV3_5G001050Bottle gourd (USVL1VR-Ls)cuclsiB402
CsaV3_5G001050Melon (DHL92) v3.5.1cucmeB357
CsaV3_5G001050Melon (DHL92) v3.5.1cucmeB411
CsaV3_5G001050Melon (DHL92) v3.5.1cucmeB418
CsaV3_5G001050Melon (DHL92) v3.6.1cucmedB349
CsaV3_5G001050Melon (DHL92) v3.6.1cucmedB404
CsaV3_5G001050Watermelon (Charleston Gray)cucwcgB385
CsaV3_5G001050Watermelon (Charleston Gray)cucwcgB413
CsaV3_5G001050Watermelon (Charleston Gray)cucwcgB417
CsaV3_5G001050Watermelon (97103) v1cucwmB423
CsaV3_5G001050Watermelon (97103) v1cucwmB433
CsaV3_5G001050Watermelon (97103) v1cucwmB430
CsaV3_5G001050Watermelon (97103) v2cucwmbB351
CsaV3_5G001050Watermelon (97103) v2cucwmbB395
CsaV3_5G001050Watermelon (97103) v2cucwmbB399
CsaV3_5G001050Watermelon (97103) v2cucwmbB411
CsaV3_5G001050Wax gourdcucwgoB451
CsaV3_5G001050Wax gourdcucwgoB492