CsaV3_5G000920 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G000920
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 447210 .. 447401 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGATGTTTGATGGTCCTCCTTTGTGTCGTTGGCTCCTCAGCGGAAATTCTTCATGGGTCCTTCATGATACAACTAGGACCTTGAGTCTTTCCTCATTTGTCCCACCACTCTTGTCCACTTACGAGAACTTGCTCTTATCAAAGTCCGTAGAAAAGGTAGATAGAGCACGGCGATTTTTTCTTATGTAA

mRNA sequence

ATGTGGATGTTTGATGGTCCTCCTTTGTGTCGTTGGCTCCTCAGCGGAAATTCTTCATGGGTCCTTCATGATACAACTAGGACCTTGAGTCTTTCCTCATTTGTCCCACCACTCTTGTCCACTTACGAGAACTTGCTCTTATCAAAGTCCGTAGAAAAGGTAGATAGAGCACGGCGATTTTTTCTTATGTAA

Coding sequence (CDS)

ATGTGGATGTTTGATGGTCCTCCTTTGTGTCGTTGGCTCCTCAGCGGAAATTCTTCATGGGTCCTTCATGATACAACTAGGACCTTGAGTCTTTCCTCATTTGTCCCACCACTCTTGTCCACTTACGAGAACTTGCTCTTATCAAAGTCCGTAGAAAAGGTAGATAGAGCACGGCGATTTTTTCTTATGTAA

Protein sequence

MWMFDGPPLCRWLLSGNSSWVLHDTTRTLSLSSFVPPLLSTYENLLLSKSVEKVDRARRFFLM
Homology
[Close]
BLAST of CsaV3_5G000920 vs. NCBI nr
Match: KGN49907.1 (hypothetical protein Csa_5G139845 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 2.3e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MWMFDGPPLCRWLLSGNSSWVLHDTTRTLSLSSFVPPLLSTYENLLLSKSVEKVDRARRF 60
          MWMFDGPPLCRWLLSGNSSWVLHDTTRTLSLSSFVPPLLSTYENLLLSKSVEKVDRARRF
Sbjct: 1  MWMFDGPPLCRWLLSGNSSWVLHDTTRTLSLSSFVPPLLSTYENLLLSKSVEKVDRARRF 60

Query: 61 FLM 64
          FLM
Sbjct: 61 FLM 63

[Close]
BLAST of CsaV3_5G000920 vs. TrEMBL
Match: tr|A0A0A0KND9|A0A0A0KND9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139845 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.5e-28
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MWMFDGPPLCRWLLSGNSSWVLHDTTRTLSLSSFVPPLLSTYENLLLSKSVEKVDRARRF 60
          MWMFDGPPLCRWLLSGNSSWVLHDTTRTLSLSSFVPPLLSTYENLLLSKSVEKVDRARRF
Sbjct: 1  MWMFDGPPLCRWLLSGNSSWVLHDTTRTLSLSSFVPPLLSTYENLLLSKSVEKVDRARRF 60

Query: 61 FLM 64
          FLM
Sbjct: 61 FLM 63

The following BLAST results are available for this feature:
BLAST of CsaV3_5G000920 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49907.12.3e-28100.00hypothetical protein Csa_5G139845 [Cucumis sativus][more]
BLAST of CsaV3_5G000920 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G000920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G000920 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KND9|A0A0A0KND9_CUCSA1.5e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139845 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G000920.1CsaV3_5G000920.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G000920Silver-seed gourdcarcucB0577
CsaV3_5G000920Silver-seed gourdcarcucB1035
CsaV3_5G000920Cucumber (Gy14) v2cgybcucB130
CsaV3_5G000920Cucumber (Gy14) v2cgybcucB186
CsaV3_5G000920Cucumber (Gy14) v2cgybcucB232
CsaV3_5G000920Cucumber (Gy14) v1cgycucB136
CsaV3_5G000920Cucumber (Gy14) v1cgycucB327
CsaV3_5G000920Cucumber (Gy14) v1cgycucB393
CsaV3_5G000920Cucurbita maxima (Rimu)cmacucB0305
CsaV3_5G000920Cucurbita maxima (Rimu)cmacucB0342
CsaV3_5G000920Cucurbita maxima (Rimu)cmacucB0402
CsaV3_5G000920Cucurbita maxima (Rimu)cmacucB0407
CsaV3_5G000920Cucurbita maxima (Rimu)cmacucB0500
CsaV3_5G000920Cucurbita maxima (Rimu)cmacucB0735
CsaV3_5G000920Cucurbita moschata (Rifu)cmocucB0870
CsaV3_5G000920Cucurbita moschata (Rifu)cmocucB0296
CsaV3_5G000920Cucurbita moschata (Rifu)cmocucB0338
CsaV3_5G000920Cucurbita moschata (Rifu)cmocucB0398
CsaV3_5G000920Cucurbita moschata (Rifu)cmocucB0403
CsaV3_5G000920Cucurbita moschata (Rifu)cmocucB0490
CsaV3_5G000920Cucurbita moschata (Rifu)cmocucB0723
CsaV3_5G000920Cucurbita pepo (Zucchini)cpecucB0046
CsaV3_5G000920Cucurbita pepo (Zucchini)cpecucB0226
CsaV3_5G000920Cucurbita pepo (Zucchini)cpecucB0275
CsaV3_5G000920Cucurbita pepo (Zucchini)cpecucB0774
CsaV3_5G000920Cucurbita pepo (Zucchini)cpecucB0910
CsaV3_5G000920Cucurbita pepo (Zucchini)cpecucB1071
CsaV3_5G000920Wild cucumber (PI 183967)cpicucB163
CsaV3_5G000920Wild cucumber (PI 183967)cpicucB237
CsaV3_5G000920Wild cucumber (PI 183967)cpicucB285
CsaV3_5G000920Bottle gourd (USVL1VR-Ls)cuclsiB345
CsaV3_5G000920Bottle gourd (USVL1VR-Ls)cuclsiB400
CsaV3_5G000920Bottle gourd (USVL1VR-Ls)cuclsiB402
CsaV3_5G000920Melon (DHL92) v3.5.1cucmeB357
CsaV3_5G000920Melon (DHL92) v3.5.1cucmeB411
CsaV3_5G000920Melon (DHL92) v3.5.1cucmeB416
CsaV3_5G000920Melon (DHL92) v3.5.1cucmeB418
CsaV3_5G000920Melon (DHL92) v3.6.1cucmedB349
CsaV3_5G000920Melon (DHL92) v3.6.1cucmedB404
CsaV3_5G000920Melon (DHL92) v3.6.1cucmedB409
CsaV3_5G000920Watermelon (Charleston Gray)cucwcgB385
CsaV3_5G000920Watermelon (Charleston Gray)cucwcgB413
CsaV3_5G000920Watermelon (Charleston Gray)cucwcgB417
CsaV3_5G000920Watermelon (97103) v1cucwmB423
CsaV3_5G000920Watermelon (97103) v1cucwmB433
CsaV3_5G000920Watermelon (97103) v1cucwmB430
CsaV3_5G000920Watermelon (97103) v2cucwmbB351
CsaV3_5G000920Watermelon (97103) v2cucwmbB395
CsaV3_5G000920Watermelon (97103) v2cucwmbB399
CsaV3_5G000920Wax gourdcucwgoB451
CsaV3_5G000920Wax gourdcucwgoB493
CsaV3_5G000920Silver-seed gourdcarcucB0610
CsaV3_5G000920Cucumber (Chinese Long) v3cuccucB119
CsaV3_5G000920Cucumber (Chinese Long) v3cuccucB175