CsaV3_5G000870 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G000870
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5 : 428688 .. 431028 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAGTGCCGTATCAGCAAACAGATTGTGGAGTTTTATATGGATGTGGAGTTTTATATGTTTGACAAATTGGGGCACAATGCACCAATCTTCGCAGTCCACCTGTTCGTTCAGCTACGTTCAGACGTCTTCATGGCGTCACATTTGAGCGAAACTGGTAAGGAAAAAGAAAATCATGGGAAATTTCTCCCATTTAGTTTCCTTTGTTCTGTACTTTTGACTTGGAAGTGATGGGACACATTTCAAAAGCTATATAAAGCCTTTATTCTTTATGGGGAAAGATACAATTCCCCATAAATATTCATCTATTTGTGATGGAGTTTCGGGACTTGAGAAGCTTTCAGGAGCTGAAAGTTATTTACAAGGAGCAAGAAGAAAGGGTGTGTCACCATGATAGCAAAGTCCAGAATTTGGTTATTGGGTACCTCATTTTTGGACGATTGCTCATCTTTGGTATTGCTCAAACTTTCTTGCCCTTTAAGTGCAAGGATTGGTGGGTCATTTTGGCTTTAACTCTTTCCTGTACTCTTATCTACTTTTCGCTTTTACTGGATGCAGTCACCATGTTACGTCGAGCTCAATATCAACTAGATATAATCCGGGAGGAACTAATCGAAATTTGCCAACGGATTTTGGAAACTCAAAACCAAAAGGAACTCGTGGATCTAACTCAACTCACGATGGAGGCTGGAGAATCTAATGATGGATTTGATTATAACTTTGGTTTTCATAAGAAGATGCTCATGCTTGATCATTCTAGTATTGTCCGGAGGAAAGTTCATATGTACTTCACTGTTTCTGTTTTGCTTGTTGTTATTGTTATTGAGCTATATGTTTCTAAGTACTTGGTGTGCAACTGAAATGGATATCGTTTTGGCCCCTTGTTGGTGGAGTCGTAGGTAGAATTTTGCTTTCACAAGTGCTTTGAGAGGAAATGAGAGGAAATGAGAGGATTCGAGTTTAATGGGCCAAAAAATGAATTAAGTTTTCTCTATGTAATTAACAACAAAATGGCTTTTTTCGTATCTTTTTTTATCATAAATTTGTATGGTTCCCTTGATTGGTTCATCTTCTCCTTTTCTGTGGTGATTACTTGCTCTTAGATTAAGAATGTTCCCTTTTTCTCCTTACACTTTTTAAATCTTATCATTAGGTGTTGGTCAATAATAATAATAAAACAAACTATTTACCTCATAGAACAAAATCTGTTAGACTTATTTTTATAAATATATTTCTCAATTTTGCTATTTTTAACAATTTTCTGCTATGATTATATTAGTCTTTTTTTTAAGAGGTAGTCTGAAACTTTCTAAGAAAAAAATGCAAGGCATAAACTCACTAACTAATCATAATATTTACAATCTGTGGCATAAGCTTTAACCTAATGTTTCAAGTCTGACAAGTGAAGCAACAAAAAAGTTAACCTAAAGAATAACTTCACATTCTAATCTTTACCATCTCCAAGCACGCATGCTCTATACAAGAAGTATAACAATAATATACACAAACCAAGCTGTACAATACGATCTCCAACTATGGGGTTGTGCTCTAGTTACGTAAGATGCTTCAGAAGAGAACAGCTTGTAATTAGCAGCTTCCTCCACTCCAGCGTTTGGTCAACTACACTTTGCTAGATGGTTGTGGCAATGCAATGTTGATATCCTATCATGTCAAGCCATAATGAGTGAAGTCATCAACTTGTAATTTTGAATCCAACCAGACTTGAACAACAAGTGTTCAAAGTCAAAAAATTATCTTCTTCATGATATCTACATACAAGTCTTGTTTGTAATGAACTGTATGCAAAGTTGCTTAATTGAGAAGTTTTGAAATCCAAGGCTTTGTAGGCAAAAGAATTTATGACGGTAGAAATCGGCAGCTAATTAAAAATTCTCTCCATTTAAATGAAAAAGGTTTTGCAATTTATATTGATGTCTAAGGTCCAATTTTATGAAAGACGAATGGTCACGTTCAAGGTAAAATTAGATGTGTTTTTCCCTGAGATAGATAGCATATATGGAAGGATTAAAATGTAACTAAAAGAGGATGAGTATATGATATATAATTTCCCTTTGAAGAAACAAACCTGGCCATTCCCATCTCATTCTTCATCCTCAAGATCAACTATCCTAAACTTTCTTCCCGTTGTACGATACACACTGGGAGACACTTCATTGTCTGAATCTGCAAACTCATCTTCCATGGCCTTTTGCATCAAATCATCCATATTGACACGGCCAGCTTCAGCATCCTTCCCTTGATTTTCCGTAAAGTCATTCAAGTCAACATCATCTGAAGGCGGTCCACCAACCCCCATAGTTTCCAAGCTACTGGCTTGGTTTC

mRNA sequence

ATGGATGTGGAGTTTTATATGTTTGACAAATTGGGGCACAATGCACCAATCTTCGCAGTCCACCTGTTCGTTCAGCTACGTTCAGACGTCTTCATGGCGTCACATTTGAGCGAAACTGTCACCATGTTACGTCGAGCTCAATATCAACTAGATATAATCCGGGAGGAACTAATCGAAATTTGCCAACGGATTTTGGAAACTCAAAACCAAAAGGAACTCGTGGATCTAACTCAACTCACGATGGAGGCTGGAGAATCTAATGATGGATTTGATTATAACTTTGGTTTTCATAAGAAGATGCTCATGCTTGATCATTCTAGTATTGTCCGGAGGAAAGTTCATATGTACTTCACTGTTTCTGTTTTGCTTGTTGTTATTGTTATTGAGCTATATGTTTCTAAGTACTTGGTGTGCAACTGA

Coding sequence (CDS)

ATGGATGTGGAGTTTTATATGTTTGACAAATTGGGGCACAATGCACCAATCTTCGCAGTCCACCTGTTCGTTCAGCTACGTTCAGACGTCTTCATGGCGTCACATTTGAGCGAAACTGTCACCATGTTACGTCGAGCTCAATATCAACTAGATATAATCCGGGAGGAACTAATCGAAATTTGCCAACGGATTTTGGAAACTCAAAACCAAAAGGAACTCGTGGATCTAACTCAACTCACGATGGAGGCTGGAGAATCTAATGATGGATTTGATTATAACTTTGGTTTTCATAAGAAGATGCTCATGCTTGATCATTCTAGTATTGTCCGGAGGAAAGTTCATATGTACTTCACTGTTTCTGTTTTGCTTGTTGTTATTGTTATTGAGCTATATGTTTCTAAGTACTTGGTGTGCAACTGA

Protein sequence

MDVEFYMFDKLGHNAPIFAVHLFVQLRSDVFMASHLSETVTMLRRAQYQLDIIREELIEICQRILETQNQKELVDLTQLTMEAGESNDGFDYNFGFHKKMLMLDHSSIVRRKVHMYFTVSVLLVVIVIELYVSKYLVCN
Homology
[Close]
BLAST of CsaV3_5G000870 vs. NCBI nr
Match: XP_011654635.1 (PREDICTED: uncharacterized protein LOC105435426 isoform X2 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 1.0e-49
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 32  MASHLSETVTMLRRAQYQLDIIREELIEICQRILETQNQKELVDLTQLTMEAGESNDGFD 91
           MASHLSETVTMLRRAQYQLDIIREELIEICQRILETQNQKELVDLTQLTMEAGESNDGFD
Sbjct: 1   MASHLSETVTMLRRAQYQLDIIREELIEICQRILETQNQKELVDLTQLTMEAGESNDGFD 60

Query: 92  YNFGFHKKMLMLDHSSIVRRKVHMYFTVSVLLVVIVIELYVSKYLVCN 140
           YNFGFHKKMLMLDHSSIVRRKVHMYFTVSVLLVVIVIELYVSKYLVCN
Sbjct: 61  YNFGFHKKMLMLDHSSIVRRKVHMYFTVSVLLVVIVIELYVSKYLVCN 108

[Close]
BLAST of CsaV3_5G000870 vs. NCBI nr
Match: KGN49902.1 (hypothetical protein Csa_5G139800 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 9.1e-46
Identity = 105/120 (87.50%), Postives = 108/120 (90.00%), Query Frame = 0 

Query: 20  VHLFVQLRSDVFMASHLSETVTMLRRAQYQLDIIREELIEICQRILETQNQKELVDLTQL 79
           V L + L   +   S L + VTMLRRAQYQLDIIREELIEICQRILETQNQKELVDLTQL
Sbjct: 62  VILALTLSCTLIYFSLLLDAVTMLRRAQYQLDIIREELIEICQRILETQNQKELVDLTQL 121

Query: 80  TMEAGESNDGFDYNFGFHKKMLMLDHSSIVRRKVHMYFTVSVLLVVIVIELYVSKYLVCN 139
           TMEAGESNDGFDYNFGFHKKMLMLDHSSIVRRKVHMYFTVSVLLVVIVIELYVSKYLVCN
Sbjct: 122 TMEAGESNDGFDYNFGFHKKMLMLDHSSIVRRKVHMYFTVSVLLVVIVIELYVSKYLVCN 181

[Close]
BLAST of CsaV3_5G000870 vs. NCBI nr
Match: XP_011654634.1 (PREDICTED: uncharacterized protein LOC105435426 isoform X1 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 4.5e-45
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 40  VTMLRRAQYQLDIIREELIEICQRILETQNQKELVDLTQLTMEAGESNDGFDYNFGFHKK 99
           VTMLRRAQYQLDIIREELIEICQRILETQNQKELVDLTQLTMEAGESNDGFDYNFGFHKK
Sbjct: 47  VTMLRRAQYQLDIIREELIEICQRILETQNQKELVDLTQLTMEAGESNDGFDYNFGFHKK 106

Query: 100 MLMLDHSSIVRRKVHMYFTVSVLLVVIVIELYVSKYLVCN 140
           MLMLDHSSIVRRKVHMYFTVSVLLVVIVIELYVSKYLVCN
Sbjct: 107 MLMLDHSSIVRRKVHMYFTVSVLLVVIVIELYVSKYLVCN 146

[Close]
BLAST of CsaV3_5G000870 vs. NCBI nr
Match: XP_022157182.1 (uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncharacterized protein LOC111023958 [Momordica charantia])

HSP 1 Score: 104.4 bits (259), Expect = 3.3e-19
Identity = 62/102 (60.78%), Postives = 76/102 (74.51%), Query Frame = 0 

Query: 38  ETVTMLRRAQYQLDIIREELIEICQRILETQNQKELVDLTQLTMEAGESNDGFDYNFGFH 97
           + V ML R QYQLDII +EL E+ Q+IL ++NQ    D   L+ME GES+ GF+  FGFH
Sbjct: 81  DAVAMLFRTQYQLDIICKELKELFQQILVSKNQ----DDVGLSMETGESSGGFE--FGFH 140

Query: 98  KKMLMLDHSSIVRRKVHMYFTVSVLLVVIVIELYVSKYLVCN 140
           +KMLMLDH  IV RKV++YFTVS LL V  IELYVSKY++CN
Sbjct: 141 EKMLMLDHFRIVGRKVYIYFTVSALLAVTAIELYVSKYVLCN 176

[Close]
BLAST of CsaV3_5G000870 vs. NCBI nr
Match: XP_022157176.1 (uncharacterized protein LOC111023953 isoform X2 [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 3.1e-17
Identity = 56/102 (54.90%), Postives = 72/102 (70.59%), Query Frame = 0 

Query: 38  ETVTMLRRAQYQLDIIREELIEICQRILETQNQKELVDLTQLTMEAGESNDGFDYNFGFH 97
           +  T L + + QLD+I +ELIE+CQ+IL  QNQ    D   L ME G+ +DGF+  FGFH
Sbjct: 80  DAATRLYQTKGQLDMICKELIEVCQQILVAQNQ----DDVDLAMEGGDFSDGFE--FGFH 139

Query: 98  KKMLMLDHSSIVRRKVHMYFTVSVLLVVIVIELYVSKYLVCN 140
           +KML+LDH   V RKV++YFTV  L+ V  IELYVSKYL+CN
Sbjct: 140 EKMLVLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 175

[Close]
BLAST of CsaV3_5G000870 vs. TrEMBL
Match: tr|A0A0A0KND2|A0A0A0KND2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139800 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 6.0e-46
Identity = 105/120 (87.50%), Postives = 108/120 (90.00%), Query Frame = 0 

Query: 20  VHLFVQLRSDVFMASHLSETVTMLRRAQYQLDIIREELIEICQRILETQNQKELVDLTQL 79
           V L + L   +   S L + VTMLRRAQYQLDIIREELIEICQRILETQNQKELVDLTQL
Sbjct: 62  VILALTLSCTLIYFSLLLDAVTMLRRAQYQLDIIREELIEICQRILETQNQKELVDLTQL 121

Query: 80  TMEAGESNDGFDYNFGFHKKMLMLDHSSIVRRKVHMYFTVSVLLVVIVIELYVSKYLVCN 139
           TMEAGESNDGFDYNFGFHKKMLMLDHSSIVRRKVHMYFTVSVLLVVIVIELYVSKYLVCN
Sbjct: 122 TMEAGESNDGFDYNFGFHKKMLMLDHSSIVRRKVHMYFTVSVLLVVIVIELYVSKYLVCN 181

[Close]
BLAST of CsaV3_5G000870 vs. TrEMBL
Match: tr|A0A0A0KJZ3|A0A0A0KJZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139810 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.1e-13
Identity = 53/104 (50.96%), Postives = 65/104 (62.50%), Query Frame = 0 

Query: 38  ETVTMLRRAQYQLDIIREELIEICQRILETQNQKELVDLTQLTMEAGESNDGFDYNFGFH 97
           + V ML R   QL IIR+EL EICQ+IL  QNQ    D   L+ME GE  DGF+    FH
Sbjct: 156 DAVVMLSRTHDQLGIIRKELTEICQQILVAQNQ----DTVDLSMEGGECCDGFE--LSFH 215

Query: 98  KKMLMLDHSSIVR--RKVHMYFTVSVLLVVIVIELYVSKYLVCN 140
           ++M MLD  S+V   RK ++YF V  LLV+  IELY  K L+CN
Sbjct: 216 ERMFMLDQFSVVENGRKGYIYFIVCALLVITAIELYACKRLLCN 253

The following BLAST results are available for this feature:
BLAST of CsaV3_5G000870 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011654635.11.0e-49100.00PREDICTED: uncharacterized protein LOC105435426 isoform X2 [Cucumis sativus][more]
KGN49902.19.1e-4687.50hypothetical protein Csa_5G139800 [Cucumis sativus][more]
XP_011654634.14.5e-45100.00PREDICTED: uncharacterized protein LOC105435426 isoform X1 [Cucumis sativus][more]
XP_022157182.13.3e-1960.78uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncha... [more]
XP_022157176.13.1e-1754.90uncharacterized protein LOC111023953 isoform X2 [Momordica charantia][more]
BLAST of CsaV3_5G000870 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G000870 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G000870 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KND2|A0A0A0KND2_CUCSA6.0e-4687.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139800 PE=4 SV=1[more]
tr|A0A0A0KJZ3|A0A0A0KJZ3_CUCSA5.1e-1350.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139810 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G000870.1CsaV3_5G000870.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_5G000870CSPI05G03520Wild cucumber (PI 183967)cpicucB285
CsaV3_5G000870CmaCh15G010500Cucurbita maxima (Rimu)cmacucB0342
CsaV3_5G000870Cp4.1LG13g02950Cucurbita pepo (Zucchini)cpecucB0226
CsaV3_5G000870CsGy5G000780Cucumber (Gy14) v2cgybcucB232
CsaV3_5G000870Carg26227Silver-seed gourdcarcucB0333
CsaV3_5G000870Cla004924Watermelon (97103) v1cucwmB433
CsaV3_5G000870ClCG01G000740Watermelon (Charleston Gray)cucwcgB385
CsaV3_5G000870Lsi09G000580Bottle gourd (USVL1VR-Ls)cuclsiB345
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_5G000870Silver-seed gourdcarcucB0577
CsaV3_5G000870Silver-seed gourdcarcucB1035
CsaV3_5G000870Cucumber (Gy14) v2cgybcucB130
CsaV3_5G000870Cucumber (Gy14) v2cgybcucB186
CsaV3_5G000870Cucumber (Gy14) v1cgycucB136
CsaV3_5G000870Cucumber (Gy14) v1cgycucB327
CsaV3_5G000870Cucumber (Gy14) v1cgycucB393
CsaV3_5G000870Cucurbita maxima (Rimu)cmacucB0305
CsaV3_5G000870Cucurbita maxima (Rimu)cmacucB0402
CsaV3_5G000870Cucurbita maxima (Rimu)cmacucB0407
CsaV3_5G000870Cucurbita maxima (Rimu)cmacucB0500
CsaV3_5G000870Cucurbita maxima (Rimu)cmacucB0735
CsaV3_5G000870Cucurbita moschata (Rifu)cmocucB0870
CsaV3_5G000870Cucurbita moschata (Rifu)cmocucB0296
CsaV3_5G000870Cucurbita moschata (Rifu)cmocucB0338
CsaV3_5G000870Cucurbita moschata (Rifu)cmocucB0398
CsaV3_5G000870Cucurbita moschata (Rifu)cmocucB0403
CsaV3_5G000870Cucurbita moschata (Rifu)cmocucB0490
CsaV3_5G000870Cucurbita moschata (Rifu)cmocucB0723
CsaV3_5G000870Cucurbita pepo (Zucchini)cpecucB0046
CsaV3_5G000870Cucurbita pepo (Zucchini)cpecucB0275
CsaV3_5G000870Cucurbita pepo (Zucchini)cpecucB0774
CsaV3_5G000870Cucurbita pepo (Zucchini)cpecucB0910
CsaV3_5G000870Cucurbita pepo (Zucchini)cpecucB1071
CsaV3_5G000870Wild cucumber (PI 183967)cpicucB163
CsaV3_5G000870Wild cucumber (PI 183967)cpicucB237
CsaV3_5G000870Bottle gourd (USVL1VR-Ls)cuclsiB400
CsaV3_5G000870Bottle gourd (USVL1VR-Ls)cuclsiB402
CsaV3_5G000870Melon (DHL92) v3.5.1cucmeB357
CsaV3_5G000870Melon (DHL92) v3.5.1cucmeB411
CsaV3_5G000870Melon (DHL92) v3.5.1cucmeB416
CsaV3_5G000870Melon (DHL92) v3.5.1cucmeB418
CsaV3_5G000870Melon (DHL92) v3.6.1cucmedB349
CsaV3_5G000870Melon (DHL92) v3.6.1cucmedB404
CsaV3_5G000870Melon (DHL92) v3.6.1cucmedB409
CsaV3_5G000870Watermelon (Charleston Gray)cucwcgB413
CsaV3_5G000870Watermelon (Charleston Gray)cucwcgB417
CsaV3_5G000870Watermelon (97103) v1cucwmB423
CsaV3_5G000870Watermelon (97103) v1cucwmB430
CsaV3_5G000870Watermelon (97103) v2cucwmbB351
CsaV3_5G000870Watermelon (97103) v2cucwmbB395
CsaV3_5G000870Watermelon (97103) v2cucwmbB399
CsaV3_5G000870Wax gourdcucwgoB493
CsaV3_5G000870Cucumber (Chinese Long) v3cuccucB119
CsaV3_5G000870Cucumber (Chinese Long) v3cuccucB175