CsaV3_5G000060 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G000060
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5 : 42116 .. 42421 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGCGCTTCGACAAATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGGATCATTGTGGAGTTATGGGTATTATTTTTATAAATGGAGCTACTTGCTCACTCTCAGAAGAGCTATGCACTGCTAAATTTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATTATACCTTTGGAGCATCTGGGAGCAAATGAGCAATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTATTGTTCTGCCTTATTTGGAGAGTAA

mRNA sequence

ATGACAAGCGCTTCGACAAATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGGATCATTGTGGAGTTATGGGTATTATTTTTATAAATGGAGCTACTTGCTCACTCTCAGAAGAGCTATGCACTGCTAAATTTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATTATACCTTTGGAGCATCTGGGAGCAAATGAGCAATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTATTGTTCTGCCTTATTTGGAGAGTAA

Coding sequence (CDS)

ATGACAAGCGCTTCGACAAATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGGATCATTGTGGAGTTATGGGTATTATTTTTATAAATGGAGCTACTTGCTCACTCTCAGAAGAGCTATGCACTGCTAAATTTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATTATACCTTTGGAGCATCTGGGAGCAAATGAGCAATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTATTGTTCTGCCTTATTTGGAGAGTAA

Protein sequence

MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALFGE

Homology

[Close]

BLAST of CsaV3_5G000060 vs. NCBI nr
Match: KGN49818.1 (hypothetical protein Csa_5G138500 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 1.2e-52
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYF 60
           MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYF
Sbjct: 1   MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYF 60

Query: 61  NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALFGE 102
           NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALFGE
Sbjct: 61  NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALFGE 101

[Close]

BLAST of CsaV3_5G000060 vs. NCBI nr
Match: PON83659.1 (hypothetical protein TorRG33x02_204650, partial [Trema orientalis])

HSP 1 Score: 97.1 bits (240), Expect = 3.8e-17
Identity = 53/94 (56.38%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 1   MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCT-AKFLERMRRYKIY 60
           M SA TNMSIA+IHRDIER+WE  CGVMG+IF+     + S+++ T AK LERMRR K  
Sbjct: 61  MASAWTNMSIAMIHRDIERDWEIQCGVMGVIFLLLEILAHSQKIYTNAKILERMRRSKFI 120

Query: 61  FNIIIPLEHLGANEQWNCGARLTSRIALLVCFIV 94
              ++    L       CGARLTSRIALLVCF+V
Sbjct: 121 SIYLLLWSILEQMSNGACGARLTSRIALLVCFMV 154

[Close]

BLAST of CsaV3_5G000060 vs. NCBI nr
Match: KCW89084.1 (hypothetical protein EUGRSUZ_A01413, partial [Eucalyptus grandis])

HSP 1 Score: 90.9 bits (224), Expect = 2.7e-15
Identity = 49/93 (52.69%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 1   MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYF 60
           MTSA TNMS A+I RD+EREWE+  GVMGI   N    SL E+L   +        K  F
Sbjct: 131 MTSAWTNMSFAVIRRDLEREWENQGGVMGIFLNNWRPWSLPEDLYICENSGEDVEIKFVF 190

Query: 61  NIIIPLEHLGANEQWNCGARLTSRIALLVCFIV 94
              I LEHLGANEQW+  +     IALLVCFIV
Sbjct: 191 EFNIALEHLGANEQWSLWSMAHRGIALLVCFIV 223

[Close]

BLAST of CsaV3_5G000060 vs. NCBI nr
Match: PON71975.1 (hypothetical protein PanWU01x14_068170, partial [Parasponia andersonii])

HSP 1 Score: 89.0 bits (219), Expect = 1.0e-14
Identity = 51/94 (54.26%), Postives = 62/94 (65.96%), Query Frame = 0


Query: 1   MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCT-AKFLERMRRYKIY 60
           MTSA TNMSIA+IHRDIER+WE  CGVMG+IF+     + S+++ T AK LERMRR K  
Sbjct: 61  MTSAWTNMSIAMIHRDIERDWEIQCGVMGVIFLLLEILAHSQKIYTSAKILERMRRSKFI 120

Query: 61  FNIIIPLEHLGANEQWNCGARLTSRIALLVCFIV 94
              ++    L        GA LT RIALLVCF+V
Sbjct: 121 SIYLLLWSILEQMSNGAFGAWLTWRIALLVCFMV 154

[Close]

BLAST of CsaV3_5G000060 vs. NCBI nr
Match: CBI23079.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 36/69 (52.17%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 8  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLE 67
          MS A+IHRD+EREWE      G +F+ G+ CSLSE+L   K L      K YF  II +E
Sbjct: 1  MSFAVIHRDVEREWEKSGWSFGSLFLIGSCCSLSEDLYICKILRGDEESKFYFKFIIAVE 60

Query: 68 HLGANEQWN 77
          HLGA EQW+
Sbjct: 61 HLGAYEQWS 69

[Close]

BLAST of CsaV3_5G000060 vs. TrEMBL
Match: tr|A0A0A0KJQ0|A0A0A0KJQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138500 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.3e-53
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYF 60
           MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYF
Sbjct: 1   MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYF 60

Query: 61  NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALFGE 102
           NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALFGE
Sbjct: 61  NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALFGE 101

[Close]

BLAST of CsaV3_5G000060 vs. TrEMBL
Match: tr|A0A2P5EDP3|A0A2P5EDP3_9ROSA (Uncharacterized protein (Fragment) OS=Trema orientalis OX=63057 GN=TorRG33x02_204650 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.5e-17
Identity = 53/94 (56.38%), Postives = 64/94 (68.09%), Query Frame = 0


Query: 1   MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCT-AKFLERMRRYKIY 60
           M SA TNMSIA+IHRDIER+WE  CGVMG+IF+     + S+++ T AK LERMRR K  
Sbjct: 61  MASAWTNMSIAMIHRDIERDWEIQCGVMGVIFLLLEILAHSQKIYTNAKILERMRRSKFI 120

Query: 61  FNIIIPLEHLGANEQWNCGARLTSRIALLVCFIV 94
              ++    L       CGARLTSRIALLVCF+V
Sbjct: 121 SIYLLLWSILEQMSNGACGARLTSRIALLVCFMV 154

[Close]

BLAST of CsaV3_5G000060 vs. TrEMBL
Match: tr|A0A059DF44|A0A059DF44_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A01413 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-15
Identity = 49/93 (52.69%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 1   MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYF 60
           MTSA TNMS A+I RD+EREWE+  GVMGI   N    SL E+L   +        K  F
Sbjct: 131 MTSAWTNMSFAVIRRDLEREWENQGGVMGIFLNNWRPWSLPEDLYICENSGEDVEIKFVF 190

Query: 61  NIIIPLEHLGANEQWNCGARLTSRIALLVCFIV 94
              I LEHLGANEQW+  +     IALLVCFIV
Sbjct: 191 EFNIALEHLGANEQWSLWSMAHRGIALLVCFIV 223

[Close]

BLAST of CsaV3_5G000060 vs. TrEMBL
Match: tr|A0A2P5DF99|A0A2P5DF99_PARAD (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_068170 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.8e-15
Identity = 51/94 (54.26%), Postives = 62/94 (65.96%), Query Frame = 0


Query: 1   MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCT-AKFLERMRRYKIY 60
           MTSA TNMSIA+IHRDIER+WE  CGVMG+IF+     + S+++ T AK LERMRR K  
Sbjct: 61  MTSAWTNMSIAMIHRDIERDWEIQCGVMGVIFLLLEILAHSQKIYTSAKILERMRRSKFI 120

Query: 61  FNIIIPLEHLGANEQWNCGARLTSRIALLVCFIV 94
              ++    L        GA LT RIALLVCF+V
Sbjct: 121 SIYLLLWSILEQMSNGAFGAWLTWRIALLVCFMV 154

[Close]

BLAST of CsaV3_5G000060 vs. TrEMBL
Match: tr|A0A068U9X0|A0A068U9X0_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00019889001 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.0e-11
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 8  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLE 67
          MS  IIHRD++ EWE+       ++  G +CS+SEEL   K           +NI++   
Sbjct: 1  MSFGIIHRDVDWEWEESGWTCVYLYKIGGSCSISEELYNCKNFREDEETNFIWNILLHWS 60

Query: 68 HLGANEQWNCGARLTSRIALLVCFIVYCS 97
           L       CGA LT+RIALLVCFIV+CS
Sbjct: 61 ILEHMSNGACGAPLTARIALLVCFIVFCS 89

The following BLAST results are available for this feature:

BLAST of CsaV3_5G000060 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49818.1	1.2e-52	100.00	hypothetical protein Csa_5G138500 [Cucumis sativus]	[more]
PON83659.1	3.8e-17	56.38	hypothetical protein TorRG33x02_204650, partial [Trema orientalis]	[more]
KCW89084.1	2.7e-15	52.69	hypothetical protein EUGRSUZ_A01413, partial [Eucalyptus grandis]	[more]
PON71975.1	1.0e-14	54.26	hypothetical protein PanWU01x14_068170, partial [Parasponia andersonii]	[more]
CBI23079.3	1.1e-11	52.17	unnamed protein product, partial [Vitis vinifera]	[more]

BLAST of CsaV3_5G000060 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G000060 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G000060 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJQ0\|A0A0A0KJQ0_CUCSA	8.3e-53	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138500 PE=4 SV=1	[more]
tr\|A0A2P5EDP3\|A0A2P5EDP3_9ROSA	2.5e-17	56.38	Uncharacterized protein (Fragment) OS=Trema orientalis OX=63057 GN=TorRG33x02_20...	[more]
tr\|A0A059DF44\|A0A059DF44_EUCGR	1.8e-15	52.69	Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A01...	[more]
tr\|A0A2P5DF99\|A0A2P5DF99_PARAD	6.8e-15	54.26	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
tr\|A0A068U9X0\|A0A068U9X0_COFCA	6.0e-11	42.70	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00019889001 PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0008380	RNA splicing
biological_process	GO:0006414	translational elongation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G000060.1	CsaV3_5G000060.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G000060	CmoCh02G011800	Cucurbita moschata (Rifu)	cmocucB0722
CsaV3_5G000060	Cp4.1LG13g03390	Cucurbita pepo (Zucchini)	cpecucB0218

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G000060	Wild cucumber (PI 183967)	cpicucB285
CsaV3_5G000060	Bottle gourd (USVL1VR-Ls)	cuclsiB344
CsaV3_5G000060	Melon (DHL92) v3.5.1	cucmeB357
CsaV3_5G000060	Melon (DHL92) v3.6.1	cucmedB349
CsaV3_5G000060	Watermelon (Charleston Gray)	cucwcgB398
CsaV3_5G000060	Watermelon (97103) v1	cucwmB384
CsaV3_5G000060	Watermelon (97103) v1	cucwmB433
CsaV3_5G000060	Watermelon (97103) v2	cucwmbB362
CsaV3_5G000060	Wax gourd	cucwgoB459
CsaV3_5G000060	Silver-seed gourd	carcucB0543
CsaV3_5G000060	Silver-seed gourd	carcucB0611
CsaV3_5G000060	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G000060	Cucumber (Gy14) v1	cgycucB327
CsaV3_5G000060	Cucurbita maxima (Rimu)	cmacucB0342
CsaV3_5G000060	Cucurbita moschata (Rifu)	cmocucB0355