CsaV3_4G037530 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G037530
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 26261686 .. 26262161 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATGGAAGGTTGAAAAGAAAAATGGATTGAAGGATTTAGTAAAGGTTTTTTTAAAATTAGAAATGGAGCAGTTGGGGTTGCAGTTGCAGAATTATTCCATTTTCAGAAGAGAAAAAAGAAAGAAAAAACTTTATGGATCTGATCTGACCTTTTAAATCTTCAGGGAAGAGGAAAGAGAAAAATTGGCAATGTGATGAAGAGAGAGATGAGGGGAGAGGGAAGCATTTGGTGCTGAAAAATGCGATCCAAAATGGAAATAAACAAATCACATTGGCTGTTGGAATGTCCACCATCCACATGATGATACTCATACTGTTCCCCCTTTTTCAATTCATCGCCCTGTACTGTAAAGTTATGCCATCTCCGCTGAAAATCGACGACAAGATTTTGAAGTCAATATTCACAACAGAAACAGAATTATCAGAGCGGCCGATTTCAAATTCAGGGGAATCTCCTTTGTTTACAACTTGA

mRNA sequence

ATGGGTATGGAAGGGAAGAGGAAAGAGAAAAATTGGCAATGTGATGAAGAGAGAGATGAGGGGAGAGGGAAGCATTTGGTGCTGAAAAATGCGATCCAAAATGGAAATAAACAAATCACATTGGCTGTTGGAATGTCCACCATCCACATGATGATACTCATACTGTTCCCCCTTTTTCAATTCATCGCCCTGTACTGTAAAGTTATGCCATCTCCGCTGAAAATCGACGACAAGATTTTGAAGTCAATATTCACAACAGAAACAGAATTATCAGAGCGGCCGATTTCAAATTCAGGGGAATCTCCTTTGTTTACAACTTGA

Coding sequence (CDS)

ATGGGTATGGAAGGGAAGAGGAAAGAGAAAAATTGGCAATGTGATGAAGAGAGAGATGAGGGGAGAGGGAAGCATTTGGTGCTGAAAAATGCGATCCAAAATGGAAATAAACAAATCACATTGGCTGTTGGAATGTCCACCATCCACATGATGATACTCATACTGTTCCCCCTTTTTCAATTCATCGCCCTGTACTGTAAAGTTATGCCATCTCCGCTGAAAATCGACGACAAGATTTTGAAGTCAATATTCACAACAGAAACAGAATTATCAGAGCGGCCGATTTCAAATTCAGGGGAATCTCCTTTGTTTACAACTTGA

Protein sequence

MGMEGKRKEKNWQCDEERDEGRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQFIALYCKVMPSPLKIDDKILKSIFTTETELSERPISNSGESPLFTT
Homology
[Close]
BLAST of CsaV3_4G037530 vs. NCBI nr
Match: KGN55527.1 (hypothetical protein Csa_4G664350 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 7.2e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MGMEGKRKEKNWQCDEERDEGRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQ 60
           MGMEGKRKEKNWQCDEERDEGRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQ
Sbjct: 1   MGMEGKRKEKNWQCDEERDEGRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQ 60

Query: 61  FIALYCKVMPSPLKIDDKILKSIFTTETELSERPISNSGESPLFTT 107
           FIALYCKVMPSPLKIDDKILKSIFTTETELSERPISNSGESPLFTT
Sbjct: 61  FIALYCKVMPSPLKIDDKILKSIFTTETELSERPISNSGESPLFTT 106

[Close]
BLAST of CsaV3_4G037530 vs. TrEMBL
Match: tr|A0A0A0L4N5|A0A0A0L4N5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664350 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.8e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MGMEGKRKEKNWQCDEERDEGRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQ 60
           MGMEGKRKEKNWQCDEERDEGRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQ
Sbjct: 1   MGMEGKRKEKNWQCDEERDEGRGKHLVLKNAIQNGNKQITLAVGMSTIHMMILILFPLFQ 60

Query: 61  FIALYCKVMPSPLKIDDKILKSIFTTETELSERPISNSGESPLFTT 107
           FIALYCKVMPSPLKIDDKILKSIFTTETELSERPISNSGESPLFTT
Sbjct: 61  FIALYCKVMPSPLKIDDKILKSIFTTETELSERPISNSGESPLFTT 106

The following BLAST results are available for this feature:
BLAST of CsaV3_4G037530 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55527.17.2e-51100.00hypothetical protein Csa_4G664350 [Cucumis sativus][more]
BLAST of CsaV3_4G037530 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G037530 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G037530 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L4N5|A0A0A0L4N5_CUCSA4.8e-51100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664350 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G037530.1CsaV3_4G037530.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G037530CSPI04G27150Wild cucumber (PI 183967)cpicucB212
CsaV3_4G037530CsGy4G025460Cucumber (Gy14) v2cgybcucB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G037530Silver-seed gourdcarcucB0122
CsaV3_4G037530Silver-seed gourdcarcucB0392
CsaV3_4G037530Cucumber (Gy14) v1cgycucB415
CsaV3_4G037530Cucurbita maxima (Rimu)cmacucB0031
CsaV3_4G037530Cucurbita maxima (Rimu)cmacucB0554
CsaV3_4G037530Cucurbita moschata (Rifu)cmocucB0020
CsaV3_4G037530Cucurbita moschata (Rifu)cmocucB0540
CsaV3_4G037530Cucurbita pepo (Zucchini)cpecucB0709
CsaV3_4G037530Cucurbita pepo (Zucchini)cpecucB0974
CsaV3_4G037530Bottle gourd (USVL1VR-Ls)cuclsiB305
CsaV3_4G037530Melon (DHL92) v3.5.1cucmeB316
CsaV3_4G037530Melon (DHL92) v3.6.1cucmedB308
CsaV3_4G037530Watermelon (Charleston Gray)cucwcgB289
CsaV3_4G037530Watermelon (97103) v1cucwmB368
CsaV3_4G037530Watermelon (97103) v2cucwmbB282
CsaV3_4G037530Wax gourdcucwgoB426
CsaV3_4G037530Cucumber (Chinese Long) v3cuccucB187