CsaV3_4G037520 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G037520
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionRING-H2 finger protein ATL80
Locationchr4 : 26261020 .. 26261577 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCACCTCCGATACGTTCGAGCCTAGGTATGATTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCTTTGATTTGCGTCCTCGGTCTTGTTGCTGTTGCTCGTTGCGCCTGGCTACGCCACCTTGCTGGTGATGGTGGTGGCGCTGGTTCCACTCGTCCTCCGCCGCCTCCTGCTTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCCAAGTACACCTTCACTGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATTCGTGTGCTGCCGCAGTGTGGCCATGGGTTTCACATGTCCTGCATCGATACCTGGTTCCGATCTCACTCTTCCTGTCCTTCCTGTCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCGGCGAGCTCGAGTTCGAACGGCGGAACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGGTTCTTACCTTAG

mRNA sequence

ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCACCTCCGATACGTTCGAGCCTAGGTATGATTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCTTTGATTTGCGTCCTCGGTCTTGTTGCTGTTGCTCGTTGCGCCTGGCTACGCCACCTTGCTGGTGATGGTGGTGGCGCTGGTTCCACTCGTCCTCCGCCGCCTCCTGCTTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCCAAGTACACCTTCACTGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATTCGTGTGCTGCCGCAGTGTGGCCATGGGTTTCACATGTCCTGCATCGATACCTGGTTCCGATCTCACTCTTCCTGTCCTTCCTGTCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCGGCGAGCTCGAGTTCGAACGGCGGAACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGGTTCTTACCTTAG

Coding sequence (CDS)

ATGCGTCCCTTCAGGTACCTTGCCGGCGTCAACTCCTCCGCCACCTCCGATACGTTCGAGCCTAGGTATGATTCTGACTTCGTCATAATCCTCGCCGCCCTCCTCTGTGCTTTGATTTGCGTCCTCGGTCTTGTTGCTGTTGCTCGTTGCGCCTGGCTACGCCACCTTGCTGGTGATGGTGGTGGCGCTGGTTCCACTCGTCCTCCGCCGCCTCCTGCTTCCAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCCAAGTACACCTTCACTGCTGAGTTTTCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATTCGTGTGCTGCCGCAGTGTGGCCATGGGTTTCACATGTCCTGCATCGATACCTGGTTCCGATCTCACTCTTCCTGTCCTTCCTGTCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCGGCGAGCTCGAGTTCGAACGGCGGAACGGAATCCAGAGTGAAAGAGGAAGGAGATGATAAGACGAATAGGTTCTTACCTTAG

Protein sequence

MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDGGGAGSTRPPPPPASNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKTNRFLP
Homology
[Close]
BLAST of CsaV3_4G037520 vs. NCBI nr
Match: XP_004145558.1 (PREDICTED: RING-H2 finger protein ATL8 [Cucumis sativus] >KGN55526.1 hypothetical protein Csa_4G664340 [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 3.6e-90
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0 

Query: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDX 60
           MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDX
Sbjct: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDX 60

Query: 61  XXXXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120
           XXXXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ
Sbjct: 61  XXXXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120

Query: 121 CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180
           CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT
Sbjct: 121 CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180

Query: 181 NRFLP 186
           NRFLP
Sbjct: 181 NRFLP 185

[Close]
BLAST of CsaV3_4G037520 vs. NCBI nr
Match: XP_008453009.1 (PREDICTED: RING-H2 finger protein ATL80 [Cucumis melo])

HSP 1 Score: 339.0 bits (868), Expect = 1.0e-89
Identity = 180/185 (97.30%), Postives = 181/185 (97.84%), Query Frame = 0 

Query: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDX 60
           MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 
Sbjct: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 60

Query: 61  XXXXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120
            XXXXXXXXXXXXX  GLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ
Sbjct: 61  AXXXXXXXXXXXXXNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120

Query: 121 CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180
           CGHGFH+SCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT
Sbjct: 121 CGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180

Query: 181 NRFLP 186
           NRFLP
Sbjct: 181 NRFLP 185

[Close]
BLAST of CsaV3_4G037520 vs. NCBI nr
Match: XP_022937311.1 (RING-H2 finger protein ATL80-like [Cucurbita moschata] >XP_023535423.1 RING-H2 finger protein ATL80-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317.8 bits (813), Expect = 2.5e-83
Identity = 173/186 (93.01%), Postives = 178/186 (95.70%), Query Frame = 0 

Query: 1   MRPFRYLAGVNSSATSDTFEPR-YDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60
           MRPFRYLAGVNSSA SD+ EP+ YDSDFVIILAALLCALICVLGLVAVARCAWLRHLAG+
Sbjct: 1   MRPFRYLAGVNSSAISDSAEPQTYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGN 60

Query: 61  XXXXXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120
              XXXXXXXXXXXXXXGLKKKILRSLPKY FTAEFSAQFSDCAICLAEFAVGDEIRVLP
Sbjct: 61  VSGXXXXXXXXXXXXXXGLKKKILRSLPKYNFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120

Query: 121 QCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180
           QCGHGFH+SCID WFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK
Sbjct: 121 QCGHGFHVSCIDMWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180

Query: 181 TNRFLP 186
           T+RFLP
Sbjct: 181 TSRFLP 186

[Close]
BLAST of CsaV3_4G037520 vs. NCBI nr
Match: XP_023523429.1 (RING-H2 finger protein ATL8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 316.2 bits (809), Expect = 7.2e-83
Identity = 172/186 (92.47%), Postives = 177/186 (95.16%), Query Frame = 0 

Query: 1   MRPFRYLAGVNSSATSDTFEP-RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60
           MRPFRYLA  NSS+ SDT EP RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD
Sbjct: 1   MRPFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 61  XXXXXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120
             XXXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEF+AQFSDCAICLAEF VGDEIRVLP
Sbjct: 61  RGXXXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120

Query: 121 QCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180
           QCGHGFH+SCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVK+EG+DK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180

Query: 181 TNRFLP 186
            NRFLP
Sbjct: 181 RNRFLP 186

[Close]
BLAST of CsaV3_4G037520 vs. NCBI nr
Match: XP_022941514.1 (RING-H2 finger protein ATL80-like [Cucurbita moschata])

HSP 1 Score: 310.5 bits (794), Expect = 4.0e-81
Identity = 172/186 (92.47%), Postives = 177/186 (95.16%), Query Frame = 0 

Query: 1   MRPFRYLAGVNSSATSDTFEP-RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60
           MR FRYLA  NSS+ SDT EP RYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD
Sbjct: 1   MRSFRYLADANSSSISDTVEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 60

Query: 61  XXXXXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLP 120
           XXXXXXXXXXXXXXXXX LKKKILRSLPKYTFTAEF+AQFSDCAICLAEF VGDEIRVLP
Sbjct: 61  XXXXXXXXXXXXXXXXXXLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFVVGDEIRVLP 120

Query: 121 QCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDK 180
           QCGHGFH+SCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVK+EG+DK
Sbjct: 121 QCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKDEGEDK 180

Query: 181 TNRFLP 186
            NRFLP
Sbjct: 181 RNRFLP 186

[Close]
BLAST of CsaV3_4G037520 vs. TAIR10
Match: AT1G76410.1 (RING/U-box superfamily protein)

HSP 1 Score: 194.5 bits (493), Expect = 5.8e-50
Identity = 97/180 (53.89%), Postives = 124/180 (68.89%), Query Frame = 0 

Query: 4   FRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDXXXX 63
           FR L   NS++ ++   P ++SD V+ILA LLCAL C++GL+AV+RCAWLR +A      
Sbjct: 6   FRLLQEANSTSPAEA-SPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIA-SRNRS 65

Query: 64  XXXXXXXXXXXXXGLKKKILRSLPKYTFTAEF--SAQFSDCAICLAEFAVGDEIRVLPQC 123
                        GLKKK+LRSLPK T++ +   + +  +CAICL EFA GDE+RVLPQC
Sbjct: 66  DQTHPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQC 125

Query: 124 GHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKTN 182
           GHGFH+SCIDTW  SHSSCPSCRQILVV++C KCGG P SSSS    ++R+K+  D   N
Sbjct: 126 GHGFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQREDGPDN 183

[Close]
BLAST of CsaV3_4G037520 vs. TAIR10
Match: AT1G20823.1 (RING/U-box superfamily protein)

HSP 1 Score: 179.9 bits (455), Expect = 1.5e-45
Identity = 98/192 (51.04%), Postives = 121/192 (63.02%), Query Frame = 0 

Query: 4   FRYLAGVNS-SATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD--- 63
           FR L   N+ S   D      +SD V+ILAA        LGL+AV+RC WLR LA     
Sbjct: 6   FRLLVESNTPSPAIDNSTAALNSDLVVILAAXXXXXXXXLGLIAVSRCVWLRRLAAGNRT 65

Query: 64  -XXXXXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEF--SAQFSDCAICLAEFAVGDEIR 123
                             GLKKK+L+SLPK TF+ E   S +F++CAICLAEF+ GDE+R
Sbjct: 66  VSGSQTQSPQPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELR 125

Query: 124 VLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVK--- 183
           VLPQCGHGFH++CIDTW  SHSSCPSCRQILVV++C KCGG P SSSS   +E  ++   
Sbjct: 126 VLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGLESEPEIEIRI 185

Query: 184 EEGDDKTNRFLP 186
           ++G+D  N FLP
Sbjct: 186 KQGEDDPNSFLP 197

[Close]
BLAST of CsaV3_4G037520 vs. TAIR10
Match: AT2G17450.1 (RING-H2 finger A3A)

HSP 1 Score: 142.5 bits (358), Expect = 2.6e-34
Identity = 78/163 (47.85%), Postives = 91/163 (55.83%), Query Frame = 0 

Query: 2   RPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDXX 61
           RP R L                +SD V+IL+ALLCALICV GL AV RCAWLR       
Sbjct: 3   RPSRLLETAAPXXXXXXXXXXXESDMVVILSALLCALICVAGLAAVVRCAWLRRFTA--- 62

Query: 62  XXXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEFS--------AQFSDCAICLAEFAVGD 121
                          GLKKK L+SLP+ TFTA  S           ++CAICL +FA G+
Sbjct: 63  ------GGDSPSPNKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGE 122

Query: 122 EIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCG 157
           EIRVLP CGH FH+ CID W  S SSCPSCR+IL   +C +CG
Sbjct: 123 EIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTPVRCDRCG 156

[Close]
BLAST of CsaV3_4G037520 vs. TAIR10
Match: AT4G35480.1 (RING-H2 finger A3B)

HSP 1 Score: 131.0 bits (328), Expect = 7.8e-31
Identity = 70/158 (44.30%), Postives = 92/158 (58.23%), Query Frame = 0 

Query: 34  LLCALICVLGLVAVARCAWLRHLAGDXXXXXXXXXXXXXXXXXGLKKKILRSLPKYTFTA 93
           LLCAL+CV GL AVARCAWLR L G                  GLKKK L++LPK T+TA
Sbjct: 33  LLCALVCVAGLAAVARCAWLRRLTG----VNPAAVGEAPPPNKGLKKKALQALPKSTYTA 92

Query: 94  EFSA----------------QFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSH 153
             S                   ++CAIC+ EF+ G+EIR+LP C H FH++CID W  S 
Sbjct: 93  SASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSR 152

Query: 154 SSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEE 176
           SSCPSCR+ILV  +C +CG   +++      E++VK++
Sbjct: 153 SSCPSCRRILVPVKCDRCGHHASTA------ETQVKDQ 180

[Close]
BLAST of CsaV3_4G037520 vs. TAIR10
Match: AT1G49220.1 (RING/U-box superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 8.7e-22
Identity = 52/142 (36.62%), Postives = 75/142 (52.82%), Query Frame = 0 

Query: 18  TFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDXXXXXXXXXXXXXXXXXG 77
           T E     + +++L+ L+C +IC LGL  + RCA  R                      G
Sbjct: 49  THENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKG 108

Query: 78  LKKKILRSLPKYTFTAEFSAQFSD--CAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFR 137
           +KKK LR  P  +++ E +    D  C ICL++F  G+++R+LP+C HGFH+ CID W +
Sbjct: 109 IKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQ 168

Query: 138 SHSSCPSCRQILVVSQCQKCGG 158
            H +CP CR  L V  CQK  G
Sbjct: 169 QHLTCPKCRNCL-VETCQKILG 189

[Close]
BLAST of CsaV3_4G037520 vs. Swiss-Prot
Match: sp|Q8LC69|ATL8_ARATH (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2)

HSP 1 Score: 194.5 bits (493), Expect = 1.0e-48
Identity = 97/180 (53.89%), Postives = 124/180 (68.89%), Query Frame = 0 

Query: 4   FRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDXXXX 63
           FR L   NS++ ++   P ++SD V+ILA LLCAL C++GL+AV+RCAWLR +A      
Sbjct: 6   FRLLQEANSTSPAEA-SPPFNSDLVLILAVLLCALTCIIGLIAVSRCAWLRRIA-SRNRS 65

Query: 64  XXXXXXXXXXXXXGLKKKILRSLPKYTFTAEF--SAQFSDCAICLAEFAVGDEIRVLPQC 123
                        GLKKK+LRSLPK T++ +   + +  +CAICL EFA GDE+RVLPQC
Sbjct: 66  DQTHPPPVAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQC 125

Query: 124 GHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKTN 182
           GHGFH+SCIDTW  SHSSCPSCRQILVV++C KCGG P SSSS    ++R+K+  D   N
Sbjct: 126 GHGFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSSSGPEPDTRIKQREDGPDN 183

[Close]
BLAST of CsaV3_4G037520 vs. Swiss-Prot
Match: sp|Q9LM69|ATL80_ARATH (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.7e-44
Identity = 98/192 (51.04%), Postives = 121/192 (63.02%), Query Frame = 0 

Query: 4   FRYLAGVNS-SATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD--- 63
           FR L   N+ S   D      +SD V+ILAA        LGL+AV+RC WLR LA     
Sbjct: 6   FRLLVESNTPSPAIDNSTAALNSDLVVILAAXXXXXXXXLGLIAVSRCVWLRRLAAGNRT 65

Query: 64  -XXXXXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEF--SAQFSDCAICLAEFAVGDEIR 123
                             GLKKK+L+SLPK TF+ E   S +F++CAICLAEF+ GDE+R
Sbjct: 66  VSGSQTQSPQPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELR 125

Query: 124 VLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVK--- 183
           VLPQCGHGFH++CIDTW  SHSSCPSCRQILVV++C KCGG P SSSS   +E  ++   
Sbjct: 126 VLPQCGHGFHVACIDTWLGSHSSCPSCRQILVVARCHKCGGLPGSSSSGLESEPEIEIRI 185

Query: 184 EEGDDKTNRFLP 186
           ++G+D  N FLP
Sbjct: 186 KQGEDDPNSFLP 197

[Close]
BLAST of CsaV3_4G037520 vs. Swiss-Prot
Match: sp|O22755|ATL44_ARATH (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.7e-33
Identity = 78/163 (47.85%), Postives = 91/163 (55.83%), Query Frame = 0 

Query: 2   RPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDXX 61
           RP R L                +SD V+IL+ALLCALICV GL AV RCAWLR       
Sbjct: 3   RPSRLLETAAPXXXXXXXXXXXESDMVVILSALLCALICVAGLAAVVRCAWLRRFTA--- 62

Query: 62  XXXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEFS--------AQFSDCAICLAEFAVGD 121
                          GLKKK L+SLP+ TFTA  S           ++CAICL +FA G+
Sbjct: 63  ------GGDSPSPNKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGE 122

Query: 122 EIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCG 157
           EIRVLP CGH FH+ CID W  S SSCPSCR+IL   +C +CG
Sbjct: 123 EIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTPVRCDRCG 156

[Close]
BLAST of CsaV3_4G037520 vs. Swiss-Prot
Match: sp|Q9ZT49|ATL45_ARATH (Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=ATL45 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-29
Identity = 70/158 (44.30%), Postives = 92/158 (58.23%), Query Frame = 0 

Query: 34  LLCALICVLGLVAVARCAWLRHLAGDXXXXXXXXXXXXXXXXXGLKKKILRSLPKYTFTA 93
           LLCAL+CV GL AVARCAWLR L G                  GLKKK L++LPK T+TA
Sbjct: 33  LLCALVCVAGLAAVARCAWLRRLTG----VNPAAVGEAPPPNKGLKKKALQALPKSTYTA 92

Query: 94  EFSA----------------QFSDCAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFRSH 153
             S                   ++CAIC+ EF+ G+EIR+LP C H FH++CID W  S 
Sbjct: 93  SASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSR 152

Query: 154 SSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEE 176
           SSCPSCR+ILV  +C +CG   +++      E++VK++
Sbjct: 153 SSCPSCRRILVPVKCDRCGHHASTA------ETQVKDQ 180

[Close]
BLAST of CsaV3_4G037520 vs. Swiss-Prot
Match: sp|P0C034|ATL10_ARATH (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-20
Identity = 52/142 (36.62%), Postives = 75/142 (52.82%), Query Frame = 0 

Query: 18  TFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDXXXXXXXXXXXXXXXXXG 77
           T E     + +++L+ L+C +IC LGL  + RCA  R                      G
Sbjct: 49  THENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKG 108

Query: 78  LKKKILRSLPKYTFTAEFSAQFSD--CAICLAEFAVGDEIRVLPQCGHGFHMSCIDTWFR 137
           +KKK LR  P  +++ E +    D  C ICL++F  G+++R+LP+C HGFH+ CID W +
Sbjct: 109 IKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQ 168

Query: 138 SHSSCPSCRQILVVSQCQKCGG 158
            H +CP CR  L V  CQK  G
Sbjct: 169 QHLTCPKCRNCL-VETCQKILG 189

[Close]
BLAST of CsaV3_4G037520 vs. TrEMBL
Match: tr|A0A0A0L5Y2|A0A0A0L5Y2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664340 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 2.4e-90
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0 

Query: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDX 60
           MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDX
Sbjct: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDX 60

Query: 61  XXXXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120
           XXXXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ
Sbjct: 61  XXXXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120

Query: 121 CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180
           CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT
Sbjct: 121 CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180

Query: 181 NRFLP 186
           NRFLP
Sbjct: 181 NRFLP 185

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BLAST of CsaV3_4G037520 vs. TrEMBL
Match: tr|A0A1S3BWC1|A0A1S3BWC1_CUCME (RING-H2 finger protein ATL80 OS=Cucumis melo OX=3656 GN=LOC103493842 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 6.9e-90
Identity = 180/185 (97.30%), Postives = 181/185 (97.84%), Query Frame = 0 

Query: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDX 60
           MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGD 
Sbjct: 1   MRPFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDG 60

Query: 61  XXXXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120
            XXXXXXXXXXXXX  GLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ
Sbjct: 61  AXXXXXXXXXXXXXNKGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQ 120

Query: 121 CGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180
           CGHGFH+SCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT
Sbjct: 121 CGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRVKEEGDDKT 180

Query: 181 NRFLP 186
           NRFLP
Sbjct: 181 NRFLP 185

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BLAST of CsaV3_4G037520 vs. TrEMBL
Match: tr|F6I6U9|F6I6U9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0122g00870 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 8.2e-59
Identity = 123/184 (66.85%), Postives = 135/184 (73.37%), Query Frame = 0 

Query: 3   PFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDXXX 62
           P R+L GVNSSAT+       DSDFV+ILAALLCALICVLGLVAVARCAWLR ++G    
Sbjct: 4   PSRFLGGVNSSATASQESAAVDSDFVVILAALLCALICVLGLVAVARCAWLRRISG--AA 63

Query: 63  XXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCG 122
                         GLKKKILRSLPK T+ AE +   +DCAICL EF  GDEIRVLPQCG
Sbjct: 64  NLPGGSAPQTPANKGLKKKILRSLPKVTYAAETAGNLTDCAICLTEFVGGDEIRVLPQCG 123

Query: 123 HGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGG-TESRVKEEGDDKTN 182
           HGFH+ CIDTW  SH SCPSCRQILVV++CQKCGG PASSSS G  TESR+KE  DD  N
Sbjct: 124 HGFHVGCIDTWLGSHCSCPSCRQILVVARCQKCGGVPASSSSTGAETESRLKEREDD-VN 183

Query: 183 RFLP 186
           RFLP
Sbjct: 184 RFLP 184

[Close]
BLAST of CsaV3_4G037520 vs. TrEMBL
Match: tr|A0A2C9VXV2|A0A2C9VXV2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G126000 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.1e-58
Identity = 119/190 (62.63%), Postives = 137/190 (72.11%), Query Frame = 0 

Query: 2   RPFRYLAGVNSSATSDTF---------EPRYDSDFVIILAALLCALICVLGLVAVARCAW 61
           RPFR+L  VNSSAT+                DSDFV+ILAALLCALICVLGL+AVARCAW
Sbjct: 3   RPFRFLGAVNSSATTTNITATSESTDQTAALDSDFVVILAALLCALICVLGLIAVARCAW 62

Query: 62  LRHLAGDXXXXXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVG 121
           LR L+                   GLKKKILR+LPK TF+A+ +A+F+DCAICL EFA G
Sbjct: 63  LRRLSSTANSNALPQPSLPSAANKGLKKKILRTLPKQTFSADSAAKFTDCAICLTEFATG 122

Query: 122 DEIRVLPQCGHGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGGTESRV 181
           DEIRVLPQCGHGFH++CID W  SHSSCPSCRQILVV++CQKCGG PASSSS   TE+R+
Sbjct: 123 DEIRVLPQCGHGFHLNCIDMWLGSHSSCPSCRQILVVTRCQKCGGLPASSSSGADTEARL 182

Query: 182 KEEGDDKTNR 183
           KE  +D  NR
Sbjct: 183 KER-EDSANR 191

[Close]
BLAST of CsaV3_4G037520 vs. TrEMBL
Match: tr|A5BH91|A5BH91_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_024654 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.0e-56
Identity = 118/177 (66.67%), Postives = 130/177 (73.45%), Query Frame = 0 

Query: 3   PFRYLAGVNSSATSDTFEPRYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGDXXX 62
           P R+L GVNSSAT+       DSDFV+ILAALLCALICVLGLVAVARCAWLR ++G    
Sbjct: 4   PSRFLGGVNSSATASQESAAVDSDFVVILAALLCALICVLGLVAVARCAWLRRISG--AA 63

Query: 63  XXXXXXXXXXXXXXGLKKKILRSLPKYTFTAEFSAQFSDCAICLAEFAVGDEIRVLPQCG 122
                         GLKKKILRSLPK T+ AE +   +DCAICL EF  GDEIRVLPQCG
Sbjct: 64  NLPGGSAPQTPANKGLKKKILRSLPKVTYAAETAGNLTDCAICLTEFVGGDEIRVLPQCG 123

Query: 123 HGFHMSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPASSSSNGG-TESRVKEEGDD 179
           HGFH+ CIDTW  SH SCPSCRQILVV++CQKCGG PASSSS G  TESR+KE  DD
Sbjct: 124 HGFHVGCIDTWLGSHCSCPSCRQILVVARCQKCGGVPASSSSTGAETESRLKEREDD 178

The following BLAST results are available for this feature:
BLAST of CsaV3_4G037520 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004145558.13.6e-90100.00PREDICTED: RING-H2 finger protein ATL8 [Cucumis sativus] >KGN55526.1 hypothetica... [more]
XP_008453009.11.0e-8997.30PREDICTED: RING-H2 finger protein ATL80 [Cucumis melo][more]
XP_022937311.12.5e-8393.01RING-H2 finger protein ATL80-like [Cucurbita moschata] >XP_023535423.1 RING-H2 f... [more]
XP_023523429.17.2e-8392.47RING-H2 finger protein ATL8-like [Cucurbita pepo subsp. pepo][more]
XP_022941514.14.0e-8192.47RING-H2 finger protein ATL80-like [Cucurbita moschata][more]
BLAST of CsaV3_4G037520 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G76410.15.8e-5053.89RING/U-box superfamily protein[more]
AT1G20823.11.5e-4551.04RING/U-box superfamily protein[more]
AT2G17450.12.6e-3447.85RING-H2 finger A3A[more]
AT4G35480.17.8e-3144.30RING-H2 finger A3B[more]
AT1G49220.18.7e-2236.62RING/U-box superfamily protein[more]
BLAST of CsaV3_4G037520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8LC69|ATL8_ARATH1.0e-4853.89RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2[more]
sp|Q9LM69|ATL80_ARATH2.7e-4451.04RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1[more]
sp|O22755|ATL44_ARATH4.7e-3347.85Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT... [more]
sp|Q9ZT49|ATL45_ARATH1.4e-2944.30Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=AT... [more]
sp|P0C034|ATL10_ARATH1.6e-2036.62RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1[more]
BLAST of CsaV3_4G037520 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L5Y2|A0A0A0L5Y2_CUCSA2.4e-90100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664340 PE=4 SV=1[more]
tr|A0A1S3BWC1|A0A1S3BWC1_CUCME6.9e-9097.30RING-H2 finger protein ATL80 OS=Cucumis melo OX=3656 GN=LOC103493842 PE=4 SV=1[more]
tr|F6I6U9|F6I6U9_VITVI8.2e-5966.85Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0122g00870 PE=4 SV=... [more]
tr|A0A2C9VXV2|A0A2C9VXV2_MANES3.1e-5862.63Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G126000 PE=4 SV=... [more]
tr|A5BH91|A5BH91_VITVI1.0e-5666.67Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_024654 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0048507 meristem development
biological_process GO:0007389 pattern specification process
biological_process GO:0009743 response to carbohydrate
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G037520.1CsaV3_4G037520.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 102..143
e-value: 1.8E-7
score: 40.8
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 101..144
e-value: 3.1E-14
score: 52.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 102..144
score: 12.593
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 71..148
e-value: 7.5E-21
score: 75.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..185
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 159..185
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 21..172
NoneNo IPR availablePANTHERPTHR14155:SF187SUBFAMILY NOT NAMEDcoord: 21..172
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 101..144
e-value: 1.00258E-16
score: 69.6381
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 83..150