CsaV3_4G037460 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G037460
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 26240833 .. 26241294 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAATAGTATATGAATAATATAATAAAATTGTAATTATTTAAAATGATTATTCGTTGCCTAAAATGTTTGTATAAGATGTTTACATATTTGAAGTAAAGAGCACCCAAATCCCAATGGTGAGTAACTAAACTGGGTATGGGCTTCAATTTAGAGTGGGCTTATGGAGGGGGTGAAGCCCACATGGGGATGAGGCGAAAAGGGATCGCCGAAAAGCGGAAGGGGAAATCTCAAATCACTTTCTATCTTAGCCGCAACCCACAGCATCTAGTTGTCTCCAATGAGGAAATGCCAGGTGTCGAGCCAGAGGATGATGTAGTGTATTTGGGTGCGACCGTCAACGGACCCAAAAGGACAAGAGAGAGGGATGAACGGTGAACCGTTGGTTTGCCAGTTAGGAGATCCAAGGGCTGGGTGTGTCTGGCGGCACCGATCCACAAAATTGAGCCAAAGGTCATGCGTCA

mRNA sequence

ATGGGCTTCAATTTAGAGTGGGCTTATGGAGGGGGTGAAGCCCACATGGGGATGAGGCGAAAAGGGATCGCCGAAAAGCGGAAGGGGAAATCTCAAATCACTTTCTATCTTAGCCGCAACCCACAGCATCTAGTTGTCTCCAATGAGGAAATGCCAGGTGTCGAGCCAGAGGATGATGTAGTGTATTTGGGTGCGACCGTCAACGGACCCAAAAGGACAAGAGAGAGGGATGAACGGTGA

Coding sequence (CDS)

ATGGGCTTCAATTTAGAGTGGGCTTATGGAGGGGGTGAAGCCCACATGGGGATGAGGCGAAAAGGGATCGCCGAAAAGCGGAAGGGGAAATCTCAAATCACTTTCTATCTTAGCCGCAACCCACAGCATCTAGTTGTCTCCAATGAGGAAATGCCAGGTGTCGAGCCAGAGGATGATGTAGTGTATTTGGGTGCGACCGTCAACGGACCCAAAAGGACAAGAGAGAGGGATGAACGGTGA

Protein sequence

MGFNLEWAYGGGEAHMGMRRKGIAEKRKGKSQITFYLSRNPQHLVVSNEEMPGVEPEDDVVYLGATVNGPKRTRERDER
Homology
[Close]
BLAST of CsaV3_4G037460 vs. NCBI nr
Match: KGN55520.1 (hypothetical protein Csa_4G664280 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 6.8e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MGFNLEWAYGGGEAHMGMRRKGIAEKRKGKSQITFYLSRNPQHLVVSNEEMPGVEPEDDV 60
          MGFNLEWAYGGGEAHMGMRRKGIAEKRKGKSQITFYLSRNPQHLVVSNEEMPGVEPEDDV
Sbjct: 1  MGFNLEWAYGGGEAHMGMRRKGIAEKRKGKSQITFYLSRNPQHLVVSNEEMPGVEPEDDV 60

Query: 61 VYLGATVNGPKRTRERDER 80
          VYLGATVNGPKRTRERDER
Sbjct: 61 VYLGATVNGPKRTRERDER 79

[Close]
BLAST of CsaV3_4G037460 vs. TrEMBL
Match: tr|A0A0A0L0S4|A0A0A0L0S4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664280 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 4.5e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MGFNLEWAYGGGEAHMGMRRKGIAEKRKGKSQITFYLSRNPQHLVVSNEEMPGVEPEDDV 60
          MGFNLEWAYGGGEAHMGMRRKGIAEKRKGKSQITFYLSRNPQHLVVSNEEMPGVEPEDDV
Sbjct: 1  MGFNLEWAYGGGEAHMGMRRKGIAEKRKGKSQITFYLSRNPQHLVVSNEEMPGVEPEDDV 60

Query: 61 VYLGATVNGPKRTRERDER 80
          VYLGATVNGPKRTRERDER
Sbjct: 61 VYLGATVNGPKRTRERDER 79

The following BLAST results are available for this feature:
BLAST of CsaV3_4G037460 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55520.16.8e-38100.00hypothetical protein Csa_4G664280 [Cucumis sativus][more]
BLAST of CsaV3_4G037460 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G037460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G037460 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L0S4|A0A0A0L0S4_CUCSA4.5e-38100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664280 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G037460.1CsaV3_4G037460.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G037460CSPI04G27090Wild cucumber (PI 183967)cpicucB212
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G037460Watermelon (97103) v2cucwmbB282
CsaV3_4G037460Wax gourdcucwgoB426
CsaV3_4G037460Cucumber (Chinese Long) v3cuccucB187
CsaV3_4G037460Silver-seed gourdcarcucB0122
CsaV3_4G037460Silver-seed gourdcarcucB0392
CsaV3_4G037460Cucumber (Gy14) v2cgybcucB171
CsaV3_4G037460Cucumber (Gy14) v1cgycucB415
CsaV3_4G037460Cucurbita maxima (Rimu)cmacucB0031
CsaV3_4G037460Cucurbita maxima (Rimu)cmacucB0554
CsaV3_4G037460Cucurbita moschata (Rifu)cmocucB0020
CsaV3_4G037460Cucurbita moschata (Rifu)cmocucB0540
CsaV3_4G037460Cucurbita pepo (Zucchini)cpecucB0310
CsaV3_4G037460Cucurbita pepo (Zucchini)cpecucB0709
CsaV3_4G037460Cucurbita pepo (Zucchini)cpecucB0974
CsaV3_4G037460Bottle gourd (USVL1VR-Ls)cuclsiB305
CsaV3_4G037460Melon (DHL92) v3.5.1cucmeB316
CsaV3_4G037460Melon (DHL92) v3.6.1cucmedB308
CsaV3_4G037460Watermelon (Charleston Gray)cucwcgB289
CsaV3_4G037460Watermelon (97103) v1cucwmB368