CsaV3_4G037420 (gene) Cucumber (Chinese Long) v3

NameCsaV3_4G037420
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 26218879 .. 26219087 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCCCAGTGGAGAACAGACAATTCAACCATAGCAGTGAGAAGGAAGGCAGAGAAATGATGAGATGGTAGGTCTGTTGAGAAATTGGAGTCCTCGTTGAGAGGGATGAGGTGTGGTCTGTAGCGAGGGATCGAGCGAAGGTGGAGAAGTGGGAGAAGACAAGAAGCCGATTGCCAATATACCGAACAACAACAAAGGAAAGGAATAA

mRNA sequence

ATGATCCCAGTGGAGAACAGACAATTCAACCATAGCAGTGAGAAGGAAGGCAGAGAAATGATGAGATGCGAGGGATCGAGCGAAGGTGGAGAAGTGGGAGAAGACAAGAAGCCGATTGCCAATATACCGAACAACAACAAAGGAAAGGAATAA

Coding sequence (CDS)

ATGATCCCAGTGGAGAACAGACAATTCAACCATAGCAGTGAGAAGGAAGGCAGAGAAATGATGAGATGCGAGGGATCGAGCGAAGGTGGAGAAGTGGGAGAAGACAAGAAGCCGATTGCCAATATACCGAACAACAACAAAGGAAAGGAATAA

Protein sequence

MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE
BLAST of CsaV3_4G037420 vs. NCBI nr
Match: KGN55515.1 (hypothetical protein Csa_4G664230 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 3.5e-19
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 1  MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE 51
          MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE
Sbjct: 1  MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE 50

BLAST of CsaV3_4G037420 vs. TrEMBL
Match: tr|A0A0A0L0S0|A0A0A0L0S0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664230 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-19
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 1  MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE 51
          MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE
Sbjct: 1  MIPVENRQFNHSSEKEGREMMRCEGSSEGGEVGEDKKPIANIPNNNKGKE 50

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN55515.13.5e-19100.00hypothetical protein Csa_4G664230 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0L0S0|A0A0A0L0S0_CUCSA2.3e-19100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664230 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G037420.1CsaV3_4G037420.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..50

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None