CsaV3_4G034950 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G034950
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 24684948 .. 24685484 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGTTGGTGGGGGCAAGGGAAAGGGGAAGAAGAGGCAACAGAAATGGATAATTAGAAAAAGAGAAAAGGGAGGGGTCGGCCGACCCAAGTGGAGAAACAGGACGCACAAGTGGGATTGGTTTGTTAAGTTAAGATGGAATTGGAATTTTCAATATTTGGAGAAGTTGGGAATTGGATTGATGGCATGTAATGCAAATTGGAAAGTGGAAATGATGAGAGCCACACCACCATTGCCGCCGCATCCGCACCCGCCGCCCTTCACAATACAGAGACCCCCAAAAGTGGAGCTCAGAATCTTTGTGGATTTCATACCCATTTTATCACTTATTGTTTTCCTGCATTCTATTCTATTCTATTTTATTTTAAGAAAAGTTATTTTTGTTACTTATTTACTTTTTCTTTTTGTTTGTAATTACTAATTAGTGAGTAATATGTGTGCCACATTCTCAAACATTGTGCATGTTAATTACTGAAATTCAATGTGTTTCTTTTCTAAGAAAAGAGATTTGATTGTGTGCTTTTAGATCACTTGA

mRNA sequence

ATGTGTGTTGGTGGGGGCAAGGGAAAGGGGAAGAAGAGGCAACAGAAATGGATAATTAGAAAAAGAGAAAAGGGAGGGGTCGGCCGACCCAAGTGGAGAAACAGGACGCACAAGTGGGATTGGTTTGTTAAGTTAAGATGGAATTGGAATTTTCAATATTTGGAGAAGTTGGGAATTGGATTGATGGCATGTAATGCAAATTGGAAAGTGGAAATGATGAGAGCCACACCACCATTGCCGCCGCATCCGCACCCGCCGCCCTTCACAATACAGAGACCCCCAAAAGTGGAGCTCAGAATCTTTGTGGATTTCATACCCATTTTATCACTTATTATCACTTGA

Coding sequence (CDS)

ATGTGTGTTGGTGGGGGCAAGGGAAAGGGGAAGAAGAGGCAACAGAAATGGATAATTAGAAAAAGAGAAAAGGGAGGGGTCGGCCGACCCAAGTGGAGAAACAGGACGCACAAGTGGGATTGGTTTGTTAAGTTAAGATGGAATTGGAATTTTCAATATTTGGAGAAGTTGGGAATTGGATTGATGGCATGTAATGCAAATTGGAAAGTGGAAATGATGAGAGCCACACCACCATTGCCGCCGCATCCGCACCCGCCGCCCTTCACAATACAGAGACCCCCAAAAGTGGAGCTCAGAATCTTTGTGGATTTCATACCCATTTTATCACTTATTATCACTTGA

Protein sequence

MCVGGGKGKGKKRQQKWIIRKREKGGVGRPKWRNRTHKWDWFVKLRWNWNFQYLEKLGIGLMACNANWKVEMMRATPPLPPHPHPPPFTIQRPPKVELRIFVDFIPILSLIIT
Homology
[Close]
BLAST of CsaV3_4G034950 vs. NCBI nr
Match: KGN55263.1 (hypothetical protein Csa_4G642440 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MCVGGGKXXXXXXXXKWIIRKREKGGVGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MCVGGGKXXXXXXXXKWIIRKREKGGVGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MCVGGGKXXXXXXXXKWIIRKREKGGVGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXFTIQRPPKVELRIFVDFIPILSLIIT 114
           XXXXXXXXXXXXXXXXXXXXXXXXXXXFTIQRPPKVELRIFVDFIPILSLIIT
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXFTIQRPPKVELRIFVDFIPILSLIIT 113

[Close]
BLAST of CsaV3_4G034950 vs. TrEMBL
Match: tr|A0A0A0L0G8|A0A0A0L0G8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642440 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MCVGGGKXXXXXXXXKWIIRKREKGGVGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MCVGGGKXXXXXXXXKWIIRKREKGGVGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MCVGGGKXXXXXXXXKWIIRKREKGGVGRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXFTIQRPPKVELRIFVDFIPILSLIIT 114
           XXXXXXXXXXXXXXXXXXXXXXXXXXXFTIQRPPKVELRIFVDFIPILSLIIT
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXFTIQRPPKVELRIFVDFIPILSLIIT 113

The following BLAST results are available for this feature:
BLAST of CsaV3_4G034950 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55263.12.3e-10100.00hypothetical protein Csa_4G642440 [Cucumis sativus][more]
BLAST of CsaV3_4G034950 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G034950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G034950 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L0G8|A0A0A0L0G8_CUCSA1.5e-10100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642440 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G034950.1CsaV3_4G034950.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G034950CsGy4G022970Cucumber (Gy14) v2cgybcucB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G034950Cucumber (Chinese Long) v3cuccucB081
CsaV3_4G034950Cucumber (Chinese Long) v3cuccucB165
CsaV3_4G034950Cucumber (Chinese Long) v3cuccucB178
CsaV3_4G034950Cucumber (Chinese Long) v3cuccucB188
CsaV3_4G034950Silver-seed gourdcarcucB0002
CsaV3_4G034950Silver-seed gourdcarcucB0211
CsaV3_4G034950Silver-seed gourdcarcucB0352
CsaV3_4G034950Silver-seed gourdcarcucB0410
CsaV3_4G034950Silver-seed gourdcarcucB0441
CsaV3_4G034950Silver-seed gourdcarcucB0488
CsaV3_4G034950Silver-seed gourdcarcucB0810
CsaV3_4G034950Cucumber (Gy14) v2cgybcucB081
CsaV3_4G034950Cucumber (Gy14) v2cgybcucB177
CsaV3_4G034950Cucumber (Gy14) v2cgybcucB284
CsaV3_4G034950Cucumber (Gy14) v2cgybcucB339
CsaV3_4G034950Cucumber (Gy14) v1cgycucB124
CsaV3_4G034950Cucumber (Gy14) v1cgycucB340
CsaV3_4G034950Cucumber (Gy14) v1cgycucB536
CsaV3_4G034950Cucumber (Gy14) v1cgycucB597
CsaV3_4G034950Cucurbita maxima (Rimu)cmacucB0027
CsaV3_4G034950Cucurbita maxima (Rimu)cmacucB0153
CsaV3_4G034950Cucurbita maxima (Rimu)cmacucB0215
CsaV3_4G034950Cucurbita maxima (Rimu)cmacucB0397
CsaV3_4G034950Cucurbita maxima (Rimu)cmacucB0854
CsaV3_4G034950Cucurbita maxima (Rimu)cmacucB0565
CsaV3_4G034950Cucurbita maxima (Rimu)cmacucB0627
CsaV3_4G034950Cucurbita maxima (Rimu)cmacucB0800
CsaV3_4G034950Cucurbita maxima (Rimu)cmacucB0945
CsaV3_4G034950Cucurbita maxima (Rimu)cmacucB1022
CsaV3_4G034950Cucurbita moschata (Rifu)cmocucB0015
CsaV3_4G034950Cucurbita moschata (Rifu)cmocucB0136
CsaV3_4G034950Cucurbita moschata (Rifu)cmocucB0200
CsaV3_4G034950Cucurbita moschata (Rifu)cmocucB0391
CsaV3_4G034950Cucurbita moschata (Rifu)cmocucB0551
CsaV3_4G034950Cucurbita moschata (Rifu)cmocucB0611
CsaV3_4G034950Cucurbita moschata (Rifu)cmocucB0785
CsaV3_4G034950Cucurbita moschata (Rifu)cmocucB0839
CsaV3_4G034950Cucurbita moschata (Rifu)cmocucB0933
CsaV3_4G034950Cucurbita moschata (Rifu)cmocucB1006
CsaV3_4G034950Cucurbita pepo (Zucchini)cpecucB0127
CsaV3_4G034950Cucurbita pepo (Zucchini)cpecucB0269
CsaV3_4G034950Cucurbita pepo (Zucchini)cpecucB0311
CsaV3_4G034950Cucurbita pepo (Zucchini)cpecucB0511
CsaV3_4G034950Cucurbita pepo (Zucchini)cpecucB0602
CsaV3_4G034950Cucurbita pepo (Zucchini)cpecucB0701
CsaV3_4G034950Cucurbita pepo (Zucchini)cpecucB0847
CsaV3_4G034950Cucurbita pepo (Zucchini)cpecucB0969
CsaV3_4G034950Cucurbita pepo (Zucchini)cpecucB1024
CsaV3_4G034950Wild cucumber (PI 183967)cpicucB103
CsaV3_4G034950Wild cucumber (PI 183967)cpicucB212
CsaV3_4G034950Wild cucumber (PI 183967)cpicucB224
CsaV3_4G034950Wild cucumber (PI 183967)cpicucB349
CsaV3_4G034950Wild cucumber (PI 183967)cpicucB405
CsaV3_4G034950Bottle gourd (USVL1VR-Ls)cuclsiB283
CsaV3_4G034950Bottle gourd (USVL1VR-Ls)cuclsiB300
CsaV3_4G034950Bottle gourd (USVL1VR-Ls)cuclsiB312
CsaV3_4G034950Bottle gourd (USVL1VR-Ls)cuclsiB336
CsaV3_4G034950Melon (DHL92) v3.5.1cucmeB276
CsaV3_4G034950Melon (DHL92) v3.5.1cucmeB287
CsaV3_4G034950Melon (DHL92) v3.5.1cucmeB310
CsaV3_4G034950Melon (DHL92) v3.5.1cucmeB316
CsaV3_4G034950Melon (DHL92) v3.5.1cucmeB330
CsaV3_4G034950Melon (DHL92) v3.6.1cucmedB269
CsaV3_4G034950Melon (DHL92) v3.6.1cucmedB280
CsaV3_4G034950Melon (DHL92) v3.6.1cucmedB303
CsaV3_4G034950Melon (DHL92) v3.6.1cucmedB308
CsaV3_4G034950Melon (DHL92) v3.6.1cucmedB325
CsaV3_4G034950Watermelon (Charleston Gray)cucwcgB287
CsaV3_4G034950Watermelon (Charleston Gray)cucwcgB296
CsaV3_4G034950Watermelon (Charleston Gray)cucwcgB326
CsaV3_4G034950Watermelon (Charleston Gray)cucwcgB350
CsaV3_4G034950Watermelon (97103) v1cucwmB309
CsaV3_4G034950Watermelon (97103) v1cucwmB310
CsaV3_4G034950Watermelon (97103) v1cucwmB332
CsaV3_4G034950Watermelon (97103) v1cucwmB340
CsaV3_4G034950Watermelon (97103) v2cucwmbB267
CsaV3_4G034950Watermelon (97103) v2cucwmbB280
CsaV3_4G034950Watermelon (97103) v2cucwmbB292
CsaV3_4G034950Watermelon (97103) v2cucwmbB314
CsaV3_4G034950Watermelon (97103) v2cucwmbB336
CsaV3_4G034950Wax gourdcucwgoB390
CsaV3_4G034950Wax gourdcucwgoB401
CsaV3_4G034950Wax gourdcucwgoB426