CsaV3_4G033190 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G033190
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 23474367 .. 23474623 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTTACCCCCTTAAACTTCCTTTTAATTACACAAAATAGCCCCCCCCGGGACACGTGGCAGAGGCTTAAGAAGGTTCTTTTGCCCTTTGGGTAGTTTCGTAAATGCAAACATAATTAGGGTTATTTGGGGAAAAGCAGGATCTTGTGGCAGAGACAGAAGTAGCTGGCCATGTGCTGGGGAAAGTGGCGTGCCAGCTGGCCCATTCAGGTTGGAGGCTGAAGGATGAGAGTGGCGTCCAGCTAAGCACTTAA

mRNA sequence

ATGCCATTTACCCCCTTAAACTTCCTTTTAATTACACAAAATAGCCCCCCCCGGGACACGTGGCAGAGGCTTAAGAAGGATCTTGTGGCAGAGACAGAAGTAGCTGGCCATGTGCTGGGGAAAGTGGCGTGCCAGCTGGCCCATTCAGGTTGGAGGCTGAAGGATGAGAGTGGCGTCCAGCTAAGCACTTAA

Coding sequence (CDS)

ATGCCATTTACCCCCTTAAACTTCCTTTTAATTACACAAAATAGCCCCCCCCGGGACACGTGGCAGAGGCTTAAGAAGGATCTTGTGGCAGAGACAGAAGTAGCTGGCCATGTGCTGGGGAAAGTGGCGTGCCAGCTGGCCCATTCAGGTTGGAGGCTGAAGGATGAGAGTGGCGTCCAGCTAAGCACTTAA

Protein sequence

MPFTPLNFLLITQNSPPRDTWQRLKKDLVAETEVAGHVLGKVACQLAHSGWRLKDESGVQLST
Homology
[Close]
BLAST of CsaV3_4G033190 vs. NCBI nr
Match: KGN55075.1 (hypothetical protein Csa_4G627250 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 7.9e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MPFTPLNFLLITQNSPPRDTWQRLKKDLVAETEVAGHVLGKVACQLAHSGWRLKDESGVQ 60
          MPFTPLNFLLITQNSPPRDTWQRLKKDLVAETEVAGHVLGKVACQLAHSGWRLKDESGVQ
Sbjct: 1  MPFTPLNFLLITQNSPPRDTWQRLKKDLVAETEVAGHVLGKVACQLAHSGWRLKDESGVQ 60

Query: 61 LST 64
          LST
Sbjct: 61 LST 63

[Close]
BLAST of CsaV3_4G033190 vs. TrEMBL
Match: tr|A0A0A0KZJ0|A0A0A0KZJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627250 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.2e-29
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MPFTPLNFLLITQNSPPRDTWQRLKKDLVAETEVAGHVLGKVACQLAHSGWRLKDESGVQ 60
          MPFTPLNFLLITQNSPPRDTWQRLKKDLVAETEVAGHVLGKVACQLAHSGWRLKDESGVQ
Sbjct: 1  MPFTPLNFLLITQNSPPRDTWQRLKKDLVAETEVAGHVLGKVACQLAHSGWRLKDESGVQ 60

Query: 61 LST 64
          LST
Sbjct: 61 LST 63

The following BLAST results are available for this feature:
BLAST of CsaV3_4G033190 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55075.17.9e-29100.00hypothetical protein Csa_4G627250 [Cucumis sativus][more]
BLAST of CsaV3_4G033190 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G033190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G033190 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KZJ0|A0A0A0KZJ0_CUCSA5.2e-29100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627250 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G033190.1CsaV3_4G033190.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G033190Cla97C11G223620Watermelon (97103) v2cucwmbB281
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G033190Watermelon (97103) v2cucwmbB335
CsaV3_4G033190Wax gourdcucwgoB426
CsaV3_4G033190Cucumber (Chinese Long) v3cuccucB164
CsaV3_4G033190Silver-seed gourdcarcucB0194
CsaV3_4G033190Silver-seed gourdcarcucB0196
CsaV3_4G033190Silver-seed gourdcarcucB0344
CsaV3_4G033190Silver-seed gourdcarcucB0690
CsaV3_4G033190Cucumber (Gy14) v2cgybcucB171
CsaV3_4G033190Cucumber (Gy14) v2cgybcucB172
CsaV3_4G033190Cucumber (Gy14) v1cgycucB167
CsaV3_4G033190Cucumber (Gy14) v1cgycucB419
CsaV3_4G033190Cucurbita maxima (Rimu)cmacucB0028
CsaV3_4G033190Cucurbita maxima (Rimu)cmacucB0034
CsaV3_4G033190Cucurbita maxima (Rimu)cmacucB0258
CsaV3_4G033190Cucurbita maxima (Rimu)cmacucB0396
CsaV3_4G033190Cucurbita maxima (Rimu)cmacucB0566
CsaV3_4G033190Cucurbita moschata (Rifu)cmocucB0016
CsaV3_4G033190Cucurbita moschata (Rifu)cmocucB0022
CsaV3_4G033190Cucurbita moschata (Rifu)cmocucB0246
CsaV3_4G033190Cucurbita moschata (Rifu)cmocucB0393
CsaV3_4G033190Cucurbita moschata (Rifu)cmocucB0552
CsaV3_4G033190Cucurbita pepo (Zucchini)cpecucB0270
CsaV3_4G033190Cucurbita pepo (Zucchini)cpecucB0702
CsaV3_4G033190Cucurbita pepo (Zucchini)cpecucB0970
CsaV3_4G033190Cucurbita pepo (Zucchini)cpecucB0976
CsaV3_4G033190Wild cucumber (PI 183967)cpicucB212
CsaV3_4G033190Wild cucumber (PI 183967)cpicucB219
CsaV3_4G033190Bottle gourd (USVL1VR-Ls)cuclsiB304
CsaV3_4G033190Bottle gourd (USVL1VR-Ls)cuclsiB326
CsaV3_4G033190Melon (DHL92) v3.5.1cucmeB299
CsaV3_4G033190Melon (DHL92) v3.6.1cucmedB291
CsaV3_4G033190Watermelon (Charleston Gray)cucwcgB288
CsaV3_4G033190Watermelon (Charleston Gray)cucwcgB349
CsaV3_4G033190Watermelon (97103) v1cucwmB367