CsaV3_4G033080 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G033080
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	PPM-type phosphatase domain containing protein
Location	chr4 : 23407110 .. 23407483 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTTTCTACATTCCCAAAGACAACCCTTCAAAGCCCATCGGAGAAGAAGCTCAAGAGTTTAACTGTCCGTATAAGCTTGGGAAAGAACCGGGTTTGAATGAACCGATGGATGCGATGTGGCGGAATGTTACTGTAATGGCCGGAGATATTGTGGTGGTCGGAACTGACGGGTTGACGGACAACATATTCGCCGGAGAATTTGGTCGCTCAATTGGCCGTGGTATACAACGAGAAATCTGTTAGTGCAAACCAGAGGAAAAATGGAATGACGGAGATTGACTTCCTAAGTGTTGTAATTAGGATGTCGAAAACAAATTGATGTGCCATTACAAACCACTTGGATGACGTGTGTGACATGTGCATGGTGA

mRNA sequence

ATGGATTCTTTCTACATTCCCAAAGACAACCCTTCAAAGCCCATCGGAGAAGAAGCTCAAGAGTTTAACTGTCCGTATAAGCTTGGGAAAGAACCGGGTTTGAATGAACCGATGGATGCGATGTGGCGGAATGTTACTGTAATGGCCGGAGATATTGTGGTGGTCGGAACTGACGGGTTGACGGACAACATATTCGCCGGAGAATTTGGTCGCTCAATTGGCCGTGGATGTCGAAAACAAATTGATGTGCCATTACAAACCACTTGGATGACGTGTGTGACATGTGCATGGTGA

Coding sequence (CDS)

ATGGATTCTTTCTACATTCCCAAAGACAACCCTTCAAAGCCCATCGGAGAAGAAGCTCAAGAGTTTAACTGTCCGTATAAGCTTGGGAAAGAACCGGGTTTGAATGAACCGATGGATGCGATGTGGCGGAATGTTACTGTAATGGCCGGAGATATTGTGGTGGTCGGAACTGACGGGTTGACGGACAACATATTCGCCGGAGAATTTGGTCGCTCAATTGGCCGTGGATGTCGAAAACAAATTGATGTGCCATTACAAACCACTTGGATGACGTGTGTGACATGTGCATGGTGA

Protein sequence

MDSFYIPKDNPSKPIGEEAQEFNCPYKLGKEPGLNEPMDAMWRNVTVMAGDIVVVGTDGLTDNIFAGEFGRSIGRGCRKQIDVPLQTTWMTCVTCAW

Homology

[Close]

BLAST of CsaV3_4G033080 vs. NCBI nr
Match: KGN55062.1 (hypothetical protein Csa_4G627130 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 2.2e-38
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MDSFYIPKDNPSKPIGEEAQEFNCPYKLGKEPGLNEPMDAMWRNVTVMAGDIVVVGTDGL 60
          MDSFYIPKDNPSKPIGEEAQEFNCPYKLGKEPGLNEPMDAMWRNVTVMAGDIVVVGTDGL
Sbjct: 1  MDSFYIPKDNPSKPIGEEAQEFNCPYKLGKEPGLNEPMDAMWRNVTVMAGDIVVVGTDGL 60

Query: 61 TDNIFAGEFGRSIGRGCRKQI 82
          TDNIFAGEFGRSIGRG +++I
Sbjct: 61 TDNIFAGEFGRSIGRGIQREI 81

[Close]

BLAST of CsaV3_4G033080 vs. NCBI nr
Match: XP_010262929.1 (PREDICTED: probable protein phosphatase 2C 55 [Nelumbo nucifera])

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-07
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 12  SKPIGEEAQEFNCPYKLGKEPGLNEPMDAMWRNVTVMAGDIVVVGTDGLTDNIFAGEFGR 71
           S PI  +  +FNCPY+LG  P  ++P  AM   V +  GD++V GTDGL DN++  E   
Sbjct: 179 SSPI--QQHKFNCPYQLGNNPKCDQPNSAMVLKVPIKLGDVIVAGTDGLFDNLYKHEIVE 238

Query: 72  SIGRGCRKQIDVPLQTTWM 91
            + +G R     P    WM
Sbjct: 239 DVIQGTRFMGVDPQLVPWM 255

[Close]

BLAST of CsaV3_4G033080 vs. NCBI nr
Match: XP_016561058.1 (PREDICTED: probable protein phosphatase 2C 55 [Capsicum annuum])

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-07
Identity = 39/114 (34.21%), Postives = 52/114 (45.61%), Query Frame = 0


Query: 3   SFYIPKDNPSKPIGEEAQ--------------------------EFNCPYKLGKEPGLNE 62
           SFYIPK N  KP+GE+A                            FNCPY+LG     ++
Sbjct: 5   SFYIPKVNDEKPLGEDASFICVKEQTIGVADGFGGWAKKGIDSGVFNCPYQLGNASSSDD 64

Query: 63  PMDAMWRNVTVMAGDIVVVGTDGLTDNIFAGEFGRSIGRGCRK-QIDVPLQTTW 90
           P  A   +V V+AGD++V+GTDGL  N+   E    +  G    + DVP    W
Sbjct: 65  PSVAEKISVPVVAGDVIVLGTDGLFGNVHDFELEMLVNSGVDSLESDVPEILAW 118

[Close]

BLAST of CsaV3_4G033080 vs. NCBI nr
Match: CBI18942.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 22  FNCPYKLGKEPGLNEPMDAMWRNVTVMAGDIVVVGTDGLTDNIFAGEFGRSI----GRGC 80
           FNCPY+LGK  G ++P  A    + V AGD+VVVGTDGL DN+F  E   +I      GC
Sbjct: 140 FNCPYQLGKSSGCDDPSIAKELIIGVRAGDVVVVGTDGLFDNVFVSEMEVAIRVLRDEGC 199

[Close]

BLAST of CsaV3_4G033080 vs. NCBI nr
Match: XP_019071848.1 (PREDICTED: probable protein phosphatase 2C 55 [Vitis vinifera])

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 22  FNCPYKLGKEPGLNEPMDAMWRNVTVMAGDIVVVGTDGLTDNIFAGEFGRSI----GRGC 80
           FNCPY+LGK  G ++P  A    + V AGD+VVVGTDGL DN+F  E   +I      GC
Sbjct: 130 FNCPYQLGKSSGCDDPSIAKELIIGVRAGDVVVVGTDGLFDNVFVSEMEVAIRVLRDEGC 189

[Close]

BLAST of CsaV3_4G033080 vs. TAIR10
Match: AT2G30170.1 (Protein phosphatase 2C family protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.1e-06
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 22  FNCPYKLGKEPGLNEPMDAMWRNVTVMAGDIVVVGTDGLTDNIFAGE 69
           F+CPY+L  E      +DA +  V V  GD++V+G+DGL DN+F  E
Sbjct: 177 FDCPYQLSSEGSAQTYLDASFSIVEVQKGDVIVMGSDGLFDNVFDHE 223

[Close]

BLAST of CsaV3_4G033080 vs. TAIR10
Match: AT4G16580.1 (Protein phosphatase 2C family protein)

HSP 1 Score: 42.0 bits (97), Expect = 2.5e-04
Identity = 20/65 (30.77%), Postives = 30/65 (46.15%), Query Frame = 0


Query: 18  EAQEFNCPYKLGKEPGLNEPMDAMWRNVTVMAGDIVVVGTDGLTDNIFAGEFGRSIGRGC 77
           +  +FN  Y+L      + P       V V  GD+++ GTDGL DN++  E    +    
Sbjct: 343 QQHDFNFTYQLESGRNGDLPSSGQVFTVAVAPGDVIIAGTDGLFDNLYNNEITAIVVHAV 402

Query: 78  RKQID 83
           R  ID
Sbjct: 403 RANID 407

[Close]

BLAST of CsaV3_4G033080 vs. Swiss-Prot
Match: sp|O64730|P2C26_ARATH (Probable protein phosphatase 2C 26 OS=Arabidopsis thaliana OX=3702 GN=At2g30170 PE=2 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 3.7e-05
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 22  FNCPYKLGKEPGLNEPMDAMWRNVTVMAGDIVVVGTDGLTDNIFAGE 69
           F+CPY+L  E      +DA +  V V  GD++V+G+DGL DN+F  E
Sbjct: 177 FDCPYQLSSEGSAQTYLDASFSIVEVQKGDVIVMGSDGLFDNVFDHE 223

[Close]

BLAST of CsaV3_4G033080 vs. Swiss-Prot
Match: sp|Q942P9|P2C01_ORYSJ (Probable protein phosphatase 2C 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0164600 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.0e-04
Identity = 21/47 (44.68%), Postives = 29/47 (61.70%), Query Frame = 0


Query: 22  FNCPYKLGKEPGLNEPMDAMWRNVTVMAGDIVVVGTDGLTDNIFAGE 69
           F+CPY+L  E      +DA+   V +M GD++V G+DG  DNIF  E
Sbjct: 174 FDCPYQLSSEAIGQTYLDALVCTVNLMEGDMIVSGSDGFFDNIFDQE 220

[Close]

BLAST of CsaV3_4G033080 vs. TrEMBL
Match: tr|A0A0A0L3A0|A0A0A0L3A0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627130 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.5e-38
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MDSFYIPKDNPSKPIGEEAQEFNCPYKLGKEPGLNEPMDAMWRNVTVMAGDIVVVGTDGL 60
          MDSFYIPKDNPSKPIGEEAQEFNCPYKLGKEPGLNEPMDAMWRNVTVMAGDIVVVGTDGL
Sbjct: 1  MDSFYIPKDNPSKPIGEEAQEFNCPYKLGKEPGLNEPMDAMWRNVTVMAGDIVVVGTDGL 60

Query: 61 TDNIFAGEFGRSIGRGCRKQI 82
          TDNIFAGEFGRSIGRG +++I
Sbjct: 61 TDNIFAGEFGRSIGRGIQREI 81

[Close]

BLAST of CsaV3_4G033080 vs. TrEMBL
Match: tr|A0A1U8FX69|A0A1U8FX69_CAPAN (probable protein phosphatase 2C 55 OS=Capsicum annuum OX=4072 GN=LOC107860274 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.7e-07
Identity = 39/114 (34.21%), Postives = 52/114 (45.61%), Query Frame = 0


Query: 3   SFYIPKDNPSKPIGEEAQ--------------------------EFNCPYKLGKEPGLNE 62
           SFYIPK N  KP+GE+A                            FNCPY+LG     ++
Sbjct: 5   SFYIPKVNDEKPLGEDASFICVKEQTIGVADGFGGWAKKGIDSGVFNCPYQLGNASSSDD 64

Query: 63  PMDAMWRNVTVMAGDIVVVGTDGLTDNIFAGEFGRSIGRGCRK-QIDVPLQTTW 90
           P  A   +V V+AGD++V+GTDGL  N+   E    +  G    + DVP    W
Sbjct: 65  PSVAEKISVPVVAGDVIVLGTDGLFGNVHDFELEMLVNSGVDSLESDVPEILAW 118

[Close]

BLAST of CsaV3_4G033080 vs. TrEMBL
Match: tr|A0A1U8A6P5|A0A1U8A6P5_NELNU (probable protein phosphatase 2C 55 OS=Nelumbo nucifera OX=4432 GN=LOC104601344 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.7e-07
Identity = 31/79 (39.24%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 12  SKPIGEEAQEFNCPYKLGKEPGLNEPMDAMWRNVTVMAGDIVVVGTDGLTDNIFAGEFGR 71
           S PI  +  +FNCPY+LG  P  ++P  AM   V +  GD++V GTDGL DN++  E   
Sbjct: 179 SSPI--QQHKFNCPYQLGNNPKCDQPNSAMVLKVPIKLGDVIVAGTDGLFDNLYKHEIVE 238

Query: 72  SIGRGCRKQIDVPLQTTWM 91
            + +G R     P    WM
Sbjct: 239 DVIQGTRFMGVDPQLVPWM 255

[Close]

BLAST of CsaV3_4G033080 vs. TrEMBL
Match: tr|F6H0F2|F6H0F2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g01220 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-06
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 0


Query: 22  FNCPYKLGKEPGLNEPMDAMWRNVTVMAGDIVVVGTDGLTDNIFAGEFGRSI----GRGC 80
           FNCPY+LGK  G ++P  A    + V AGD+VVVGTDGL DN+F  E   +I      GC
Sbjct: 140 FNCPYQLGKSSGCDDPSIAKELIIGVRAGDVVVVGTDGLFDNVFVSEMEVAIRVLRDEGC 199

[Close]

BLAST of CsaV3_4G033080 vs. TrEMBL
Match: tr|A0A0D2MER8|A0A0D2MER8_9CHLO (Uncharacterized protein OS=Monoraphidium neglectum OX=145388 GN=MNEG_8763 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-06
Identity = 33/78 (42.31%), Postives = 41/78 (52.56%), Query Frame = 0


Query: 17  EEAQEFNCPYKLGKEPG--LNEPMDAMWRNVTVMAGDIVVVGTDGLTDNIFAGEFGRSIG 76
           ++   FN PY+LG   G   + P  AM   +TV  GDIV+ GTDGL DN+FA E    + 
Sbjct: 297 QQQHNFNFPYQLGSADGGASDHPQSAMRFELTVQPGDIVITGTDGLWDNVFAEEAATIVA 356

Query: 77  RGCRKQIDVPLQTTWMTC 93
           R CR Q D P       C
Sbjct: 357 R-CRVQGDGPEAAAHALC 373

The following BLAST results are available for this feature:

BLAST of CsaV3_4G033080 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55062.1	2.2e-38	95.06	hypothetical protein Csa_4G627130 [Cucumis sativus]	[more]
XP_010262929.1	2.6e-07	39.24	PREDICTED: probable protein phosphatase 2C 55 [Nelumbo nucifera]	[more]
XP_016561058.1	2.6e-07	34.21	PREDICTED: probable protein phosphatase 2C 55 [Capsicum annuum]	[more]
CBI18942.3	2.2e-06	50.00	unnamed protein product, partial [Vitis vinifera]	[more]
XP_019071848.1	2.2e-06	50.00	PREDICTED: probable protein phosphatase 2C 55 [Vitis vinifera]	[more]

BLAST of CsaV3_4G033080 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30170.1	2.1e-06	44.68	Protein phosphatase 2C family protein	[more]
AT4G16580.1	2.5e-04	30.77	Protein phosphatase 2C family protein	[more]

BLAST of CsaV3_4G033080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O64730\|P2C26_ARATH	3.7e-05	44.68	Probable protein phosphatase 2C 26 OS=Arabidopsis thaliana OX=3702 GN=At2g30170 ...	[more]
sp\|Q942P9\|P2C01_ORYSJ	7.0e-04	44.68	Probable protein phosphatase 2C 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os...	[more]

BLAST of CsaV3_4G033080 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L3A0\|A0A0A0L3A0_CUCSA	1.5e-38	95.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627130 PE=4 SV=1	[more]
tr\|A0A1U8FX69\|A0A1U8FX69_CAPAN	1.7e-07	34.21	probable protein phosphatase 2C 55 OS=Capsicum annuum OX=4072 GN=LOC107860274 PE...	[more]
tr\|A0A1U8A6P5\|A0A1U8A6P5_NELNU	1.7e-07	39.24	probable protein phosphatase 2C 55 OS=Nelumbo nucifera OX=4432 GN=LOC104601344 P...	[more]
tr\|F6H0F2\|F6H0F2_VITVI	1.5e-06	50.00	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g01220 PE=4 SV=...	[more]
tr\|A0A0D2MER8\|A0A0D2MER8_9CHLO	3.3e-06	42.31	Uncharacterized protein OS=Monoraphidium neglectum OX=145388 GN=MNEG_8763 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR039123	PPTC7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G033080.1	CsaV3_4G033080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12320:SF14	SUBFAMILY NOT NAMED	coord: 20..75
IPR039123	Protein phosphatase 2C	PANTHER	PTHR12320	PROTEIN PHOSPHATASE 2C	coord: 20..75

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G033080	Cucumber (Chinese Long) v3	cuccucB164
CsaV3_4G033080	Silver-seed gourd	carcucB0344
CsaV3_4G033080	Silver-seed gourd	carcucB0690
CsaV3_4G033080	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G033080	Cucumber (Gy14) v2	cgybcucB172
CsaV3_4G033080	Cucumber (Gy14) v1	cgycucB045
CsaV3_4G033080	Cucumber (Gy14) v1	cgycucB419
CsaV3_4G033080	Cucurbita maxima (Rimu)	cmacucB0032
CsaV3_4G033080	Cucurbita maxima (Rimu)	cmacucB0258
CsaV3_4G033080	Cucurbita maxima (Rimu)	cmacucB0396
CsaV3_4G033080	Cucurbita maxima (Rimu)	cmacucB0566
CsaV3_4G033080	Cucurbita moschata (Rifu)	cmocucB0019
CsaV3_4G033080	Cucurbita moschata (Rifu)	cmocucB0246
CsaV3_4G033080	Cucurbita moschata (Rifu)	cmocucB0552
CsaV3_4G033080	Cucurbita pepo (Zucchini)	cpecucB0270
CsaV3_4G033080	Cucurbita pepo (Zucchini)	cpecucB0702
CsaV3_4G033080	Cucurbita pepo (Zucchini)	cpecucB0973
CsaV3_4G033080	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G033080	Wild cucumber (PI 183967)	cpicucB217
CsaV3_4G033080	Wild cucumber (PI 183967)	cpicucB219
CsaV3_4G033080	Bottle gourd (USVL1VR-Ls)	cuclsiB304
CsaV3_4G033080	Bottle gourd (USVL1VR-Ls)	cuclsiB326
CsaV3_4G033080	Melon (DHL92) v3.5.1	cucmeB299
CsaV3_4G033080	Melon (DHL92) v3.6.1	cucmedB291
CsaV3_4G033080	Watermelon (Charleston Gray)	cucwcgB288
CsaV3_4G033080	Watermelon (Charleston Gray)	cucwcgB349
CsaV3_4G033080	Watermelon (97103) v1	cucwmB367
CsaV3_4G033080	Watermelon (97103) v2	cucwmbB281
CsaV3_4G033080	Watermelon (97103) v2	cucwmbB335
CsaV3_4G033080	Wax gourd	cucwgoB426
CsaV3_4G033080	Wax gourd	cucwgoB432