CsaV3_4G032380 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G032380
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4 : 22892642 .. 22893978 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAGTGTTTTAGAGTAATGAGATGTCTTGAGGACAGAAAAGTGGAACTTGAATTTTTTTCTCTTCAAAATAGGTCTGAAGATTGGTGGTGCATGATAGAAAGTAGACGGAAATCTATAGGTGATATAAGTTTGGATGAGTTTAAAAAGACATTCTTTGATAAGTTTTATCCACGCTCTTTTCGTGATGAAAAACAAAGTGAGTTCTTGAAGCTTAATGATTGTTGCTGAATATGAGAAGAAATATACAAAATTATCTAAGTACGCCACTAGTGTGATTGAGGATGAGATTGAAAGGTGCAAGCAATTTGAAGAGGGATTACGAGAGGAAATTCGTACTCTTGTGACAGCTTGTGCAGATTGGGTTGATTTCTCAAAGTCAATGGAGGCAGCACTAAGAGTAGAGAAAAGTGTATATGAAAGAAAGCGTGAAAGAGAAGCTTCCAAGAATGTGTGTACAGTGTACATCAAACAGTCATCGAAACTGCTCAGGTAATGAAAAAAGTGGAAGATTTGTACTGGGGGTGCCCAGTAGAGGAAATTTTAAGTCTCAGTACAGTGGTTCATCTTTTTCTAAGTCTGGATCAGGTGGAGGGACTCAGAGACCGAGCTGTTCTAGTCATCCTATATATCCTACAAGAGCTTCTCATGTTGTTCAATCTGATAAGGTAGTGTCAAGGTCTAGCAAGAGGAGTGTATGTTATAACTATGGTCAACCAGGTCATTATCGTAGAGACTATCTACTTTTGATACCGGAGAACAATACCATTCAGAAAACTACTTCTCAGACAGGAAGTCAACAACCAAAAACCACAAGAACAAGGGGTGAAGGCTCTAGTGGGGTAAAACAAAAAGGATTGGTGGGATCTCGTCAGGAATGGAAGGTTTTTGCAATGACACAATAGGAGGCAGCAAATGCACCAAACATTGTGACTGGTACGTTATCTATATTTTATAAACCTGCACATGTCTTGATGGATCTTGACGCAACACATTCTTTTGTTTCTATTATGTTTAGTGTTGGATTTGATAAAGAGCTAGAAAGTCTAACTAAGGAATTGTTGATAAGTACACCTGTAGGTGATAGTTTCATAGTCAATAGTGTGTACCGAGATTGCATGGTTCATATTGTTGGTAAAACATTAGTAGTGGATTTGATTCCCTTAGATGTTAAGGAGTTTGATGTTATCTTGGGAATGAATTTTCTATCTAGTCACTATGCCTCTATAATTTTTCATTAGAAAGAAGTTATTTTTAAACGTCCAAGAAAGAACAAGATTATTTTCTGCGGTGATAGAAAAATACTTTTCACCTGTGTGATCTATGCCTTAAAAGCC

mRNA sequence

ATGAAAGAAAGCGTGAAAGAGAAGCTTCCAAGAATGTGTGTACAGTGTACATCAAACAGTCATCGAAACTGCTCAGGTAATGAAAAAAGTGGAAGATTTGTACTGGGGGTGCCCAGTAGAGGAAATTTTAAGTCTCAGTACAGTGGTTCATCTTTTTCTAAGTCTGGATCAGGTGGAGGGACTCAGAGACCGAGCTGTTCTAGTCATCCTATATATCCTACAAGAGCTTCTCATGTTGTTCAATCTGATAAGGTAGTGTCAAGGTCTAGCAAGAGGAGTGTATGTTATAACTATGGTCAACCAGGTCATTATCGTAGAGACTATCTACTTTTGATACCGGAGAACAATACCATTCAGAAAACTACTTCTCAGACAGGAAGTCAACAACCAAAAACCACAAGAACAAGGGGTGAAGGCTCTAGTGGGGTAAAACAAAAAGGATTGGTGGGATCTCGTCAGGAATGGAAGGTTTTTGCAATGACACAATAG

Coding sequence (CDS)

ATGAAAGAAAGCGTGAAAGAGAAGCTTCCAAGAATGTGTGTACAGTGTACATCAAACAGTCATCGAAACTGCTCAGGTAATGAAAAAAGTGGAAGATTTGTACTGGGGGTGCCCAGTAGAGGAAATTTTAAGTCTCAGTACAGTGGTTCATCTTTTTCTAAGTCTGGATCAGGTGGAGGGACTCAGAGACCGAGCTGTTCTAGTCATCCTATATATCCTACAAGAGCTTCTCATGTTGTTCAATCTGATAAGGTAGTGTCAAGGTCTAGCAAGAGGAGTGTATGTTATAACTATGGTCAACCAGGTCATTATCGTAGAGACTATCTACTTTTGATACCGGAGAACAATACCATTCAGAAAACTACTTCTCAGACAGGAAGTCAACAACCAAAAACCACAAGAACAAGGGGTGAAGGCTCTAGTGGGGTAAAACAAAAAGGATTGGTGGGATCTCGTCAGGAATGGAAGGTTTTTGCAATGACACAATAG

Protein sequence

MKESVKEKLPRMCVQCTSNSHRNCSGNEKSGRFVLGVPSRGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRASHVVQSDKVVSRSSKRSVCYNYGQPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTRGEGSSGVKQKGLVGSRQEWKVFAMTQ
Homology
[Close]
BLAST of CsaV3_4G032380 vs. NCBI nr
Match: XP_011654404.1 (PREDICTED: uncharacterized protein LOC105435385 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 8.9e-61
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 0 

Query: 40  RGNFKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRASHVVQSDKVVSRSSKRSVCYNYG 99
           RGN KSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRASHVVQSDKVVSRSSKRSVCYNYG
Sbjct: 92  RGNLKSQYSGSSFSKSGSGGGTQRPSCSSHPIYPTRASHVVQSDKVVSRSSKRSVCYNYG 151

Query: 100 QPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTRGEGSSGVKQKGLVGSRQEWKVFA 159
           QPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTRGEGSSGVKQKGLVGSRQEWKVFA
Sbjct: 152 QPGHYRRDYLLLIPENNTIQKTTSQTGSQQPKTTRTRGEGSSGVKQKGLVGSRQEWKVFA 211

Query: 160 MTQ 163
           MTQ
Sbjct: 212 MTQ 214

The following BLAST results are available for this feature:
BLAST of CsaV3_4G032380 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011654404.18.9e-6199.19PREDICTED: uncharacterized protein LOC105435385 [Cucumis sativus][more]
BLAST of CsaV3_4G032380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G032380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G032380 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G032380.1CsaV3_4G032380.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..140

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_4G032380CSPI04G22030Wild cucumber (PI 183967)cpicucB212
CsaV3_4G032380CsGy4G020550Cucumber (Gy14) v2cgybcucB171
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_4G032380Silver-seed gourdcarcucB0344
CsaV3_4G032380Silver-seed gourdcarcucB0668
CsaV3_4G032380Cucumber (Gy14) v1cgycucB045
CsaV3_4G032380Cucurbita maxima (Rimu)cmacucB0032
CsaV3_4G032380Cucurbita maxima (Rimu)cmacucB0566
CsaV3_4G032380Cucurbita moschata (Rifu)cmocucB0019
CsaV3_4G032380Cucurbita moschata (Rifu)cmocucB0552
CsaV3_4G032380Cucurbita pepo (Zucchini)cpecucB0702
CsaV3_4G032380Cucurbita pepo (Zucchini)cpecucB0973
CsaV3_4G032380Wild cucumber (PI 183967)cpicucB217
CsaV3_4G032380Bottle gourd (USVL1VR-Ls)cuclsiB304
CsaV3_4G032380Melon (DHL92) v3.5.1cucmeB321
CsaV3_4G032380Melon (DHL92) v3.6.1cucmedB314
CsaV3_4G032380Watermelon (Charleston Gray)cucwcgB288
CsaV3_4G032380Watermelon (97103) v1cucwmB367
CsaV3_4G032380Watermelon (97103) v2cucwmbB281
CsaV3_4G032380Wax gourdcucwgoB426
CsaV3_4G032380Wax gourdcucwgoB432