CsaV3_4G032120 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G032120
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 22635552 .. 22635749 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCAAAAAGCATTTAAAACCAATGGTGAAGGAAAGGGACGTCACAAGCAGAGGTCAGAGCAAAAGATTCGGTACTATAAGCAATACCAAGTGAGCTACACGGGAGGACAGGTGGCGAATTGTCAATGCGTCTGTGATTTTCTTGTAGGACCAACAGGTGAGCTTCAAGATCAATTTCCATGGAGGAAAAGCTAA

mRNA sequence

ATGGACCAAAAAGCATTTAAAACCAATGGTGAAGGAAAGGGACGTCACAAGCAGAGGTCAGAGCAAAAGATTCGGTACTATAAGCAATACCAAGTGAGCTACACGGGAGGACAGGTGGCGAATTGTCAATGCGTCTGTGATTTTCTTGTAGGACCAACAGGTGAGCTTCAAGATCAATTTCCATGGAGGAAAAGCTAA

Coding sequence (CDS)

ATGGACCAAAAAGCATTTAAAACCAATGGTGAAGGAAAGGGACGTCACAAGCAGAGGTCAGAGCAAAAGATTCGGTACTATAAGCAATACCAAGTGAGCTACACGGGAGGACAGGTGGCGAATTGTCAATGCGTCTGTGATTTTCTTGTAGGACCAACAGGTGAGCTTCAAGATCAATTTCCATGGAGGAAAAGCTAA

Protein sequence

MDQKAFKTNGEGKGRHKQRSEQKIRYYKQYQVSYTGGQVANCQCVCDFLVGPTGELQDQFPWRKS

Homology

[Close]

BLAST of CsaV3_4G032120 vs. NCBI nr
Match: KGN54952.1 (hypothetical protein Csa_4G615235 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 3.0e-31
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MDQKAFKTNGEGKGRHKQRSEQKIRYYKQYQVSYTGGQVANCQCVCDFLVGPTGELQDQF 60
          MDQKAFKTNGEGKGRHKQRSEQKIRYYKQYQVSYTGGQVANCQCVCDFLVGPTGELQDQF
Sbjct: 1  MDQKAFKTNGEGKGRHKQRSEQKIRYYKQYQVSYTGGQVANCQCVCDFLVGPTGELQDQF 60

Query: 61 PWRKS 66
          PWRKS
Sbjct: 61 PWRKS 65

[Close]

BLAST of CsaV3_4G032120 vs. TrEMBL
Match: tr|A0A0A0L2X9|A0A0A0L2X9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G615235 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.0e-31
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MDQKAFKTNGEGKGRHKQRSEQKIRYYKQYQVSYTGGQVANCQCVCDFLVGPTGELQDQF 60
          MDQKAFKTNGEGKGRHKQRSEQKIRYYKQYQVSYTGGQVANCQCVCDFLVGPTGELQDQF
Sbjct: 1  MDQKAFKTNGEGKGRHKQRSEQKIRYYKQYQVSYTGGQVANCQCVCDFLVGPTGELQDQF 60

Query: 61 PWRKS 66
          PWRKS
Sbjct: 61 PWRKS 65

The following BLAST results are available for this feature:

BLAST of CsaV3_4G032120 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54952.1	3.0e-31	100.00	hypothetical protein Csa_4G615235 [Cucumis sativus]	[more]

BLAST of CsaV3_4G032120 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G032120 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G032120 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L2X9\|A0A0A0L2X9_CUCSA	2.0e-31	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G615235 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G032120.1	CsaV3_4G032120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G032120	Silver-seed gourd	carcucB0671
CsaV3_4G032120	Silver-seed gourd	carcucB1093
CsaV3_4G032120	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G032120	Cucumber (Gy14) v1	cgycucB045
CsaV3_4G032120	Cucurbita maxima (Rimu)	cmacucB0032
CsaV3_4G032120	Cucurbita maxima (Rimu)	cmacucB0556
CsaV3_4G032120	Cucurbita moschata (Rifu)	cmocucB0019
CsaV3_4G032120	Cucurbita moschata (Rifu)	cmocucB0543
CsaV3_4G032120	Cucurbita pepo (Zucchini)	cpecucB0710
CsaV3_4G032120	Cucurbita pepo (Zucchini)	cpecucB0973
CsaV3_4G032120	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G032120	Bottle gourd (USVL1VR-Ls)	cuclsiB304
CsaV3_4G032120	Watermelon (Charleston Gray)	cucwcgB288
CsaV3_4G032120	Watermelon (97103) v1	cucwmB367
CsaV3_4G032120	Watermelon (97103) v2	cucwmbB281
CsaV3_4G032120	Wax gourd	cucwgoB426